Wall clock time and date at job start Fri Mar 5 2021 22:42:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86295 * 109.47395 * 2 1 4 4 C 1.50700 * 109.47262 * 120.00366 * 2 1 3 5 5 C 1.38209 * 120.00184 * 76.25571 * 4 2 1 6 6 S 1.76204 * 120.00013 * 359.97438 * 5 4 2 7 7 O 1.42099 * 106.40021 * 177.44753 * 6 5 4 8 8 O 1.42101 * 106.40058 * 310.36778 * 6 5 4 9 9 N 1.65596 * 107.21659 * 63.90725 * 6 5 4 10 10 C 1.46498 * 120.00534 * 63.40877 * 9 6 5 11 11 C 1.52995 * 109.47477 * 164.93519 * 10 9 6 12 12 H 1.08998 * 112.85165 * 316.19905 * 11 10 9 13 13 C 1.53784 * 113.61427 * 87.50384 * 11 10 9 14 14 C 1.53787 * 87.08250 * 139.97969 * 13 11 10 15 15 H 1.09000 * 113.60811 * 89.11706 * 14 13 11 16 16 C 1.50696 * 113.68871 * 220.00617 * 14 13 11 17 17 C 1.38231 * 120.00140 * 37.27023 * 16 14 13 18 18 C 1.38240 * 120.00222 * 179.78652 * 17 16 14 19 19 C 1.38238 * 119.99668 * 0.45848 * 18 17 16 20 20 C 1.38243 * 119.99875 * 359.76807 * 19 18 17 21 21 C 1.38232 * 120.00137 * 0.02562 * 20 19 18 22 22 C 1.53782 * 87.08047 * 334.56837 * 14 13 11 23 23 C 1.38261 * 120.00160 * 180.02562 * 5 4 2 24 24 C 1.38215 * 119.99707 * 359.97438 * 23 5 4 25 25 C 1.38260 * 119.99898 * 359.97438 * 24 23 5 26 26 C 1.38209 * 120.00137 * 359.80930 * 25 24 23 27 27 H 0.96705 * 113.99472 * 54.98339 * 1 2 3 28 28 H 1.08998 * 109.46939 * 239.99706 * 2 1 3 29 29 H 1.48500 * 109.99956 * 59.99940 * 3 2 1 30 30 H 1.48500 * 110.00158 * 181.32225 * 3 2 1 31 31 H 0.97005 * 119.99672 * 243.40201 * 9 6 5 32 32 H 1.09004 * 109.46969 * 284.93845 * 10 9 6 33 33 H 1.09000 * 109.46727 * 44.93512 * 10 9 6 34 34 H 1.08993 * 113.61499 * 254.52899 * 13 11 10 35 35 H 1.08997 * 113.61033 * 25.43409 * 13 11 10 36 36 H 1.08004 * 120.00131 * 359.97438 * 17 16 14 37 37 H 1.07993 * 120.00192 * 180.24874 * 18 17 16 38 38 H 1.07997 * 119.99760 * 179.79749 * 19 18 17 39 39 H 1.07999 * 119.99527 * 180.02562 * 20 19 18 40 40 H 1.08000 * 120.00290 * 179.97438 * 21 20 19 41 41 H 1.09001 * 113.61642 * 270.88543 * 22 14 13 42 42 H 1.09000 * 113.69064 * 139.99215 * 22 14 13 43 43 H 1.07997 * 119.99710 * 179.97438 * 23 5 4 44 44 H 1.07994 * 119.99985 * 179.97438 * 24 23 5 45 45 H 1.08005 * 119.99729 * 179.97438 * 25 24 23 46 46 H 1.08000 * 120.00345 * 180.23004 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9314 -0.7105 1.2304 5 6 1.8937 -2.0905 1.2954 6 16 1.2575 -3.0193 -0.0602 7 8 1.4092 -4.3892 0.2857 8 8 0.0055 -2.4359 -0.3939 9 7 2.2582 -2.7495 -1.3517 10 6 3.6590 -3.1746 -1.2946 11 6 4.2543 -3.1602 -2.7039 12 1 3.5867 -3.5914 -3.4498 13 6 4.8388 -1.7975 -3.1118 14 6 5.9903 -2.5766 -3.7693 15 1 5.7975 -2.8471 -4.8074 16 6 7.3421 -1.9407 -3.5715 17 6 7.6483 -1.3270 -2.3714 18 6 8.8900 -0.7475 -2.1884 19 6 9.8220 -0.7734 -3.2090 20 6 9.5140 -1.3830 -4.4109 21 6 8.2739 -1.9662 -4.5924 22 6 5.6897 -3.7079 -2.7719 23 6 2.3541 -2.7423 2.4244 24 6 2.8526 -2.0138 3.4879 25 6 2.8913 -0.6333 3.4225 26 6 2.4351 0.0180 2.2920 27 1 -0.3933 0.5070 -0.7236 28 1 1.7923 -0.5139 -0.8899 29 1 1.5616 2.4678 1.2085 30 1 3.5347 1.7702 -0.0322 31 1 1.9168 -2.3100 -2.1463 32 1 4.2200 -2.4921 -0.6561 33 1 3.7160 -4.1837 -0.8864 34 1 4.2189 -1.2518 -3.8230 35 1 5.1525 -1.1862 -2.2657 36 1 6.9186 -1.3029 -1.5755 37 1 9.1307 -0.2716 -1.2493 38 1 10.7908 -0.3178 -3.0672 39 1 10.2423 -1.4036 -5.2081 40 1 8.0331 -2.4421 -5.5315 41 1 6.2360 -3.6187 -1.8329 42 1 5.7565 -4.7049 -3.2074 43 1 2.3242 -3.8207 2.4753 44 1 3.2118 -2.5228 4.3700 45 1 3.2804 -0.0640 4.2537 46 1 2.4688 1.0962 2.2394 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_40_12130088_2726874.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 5 2021 22:42:53 Heat of formation + Delta-G solvation = -13.355340 kcal Electronic energy + Delta-G solvation = -30427.098076 eV Core-core repulsion = 26376.354388 eV Total energy + Delta-G solvation = -4050.743688 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 360.123 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.10333 -40.72842 -39.07513 -38.48965 -37.43841 -36.95966 -35.87588 -33.04450 -32.53738 -32.09532 -31.73994 -28.27553 -26.95997 -26.56029 -24.60281 -24.53656 -23.52983 -22.77074 -21.85800 -20.73835 -20.04693 -19.09983 -18.52973 -18.40065 -17.93892 -17.49609 -17.07517 -16.75230 -16.39617 -16.08534 -16.01080 -15.76164 -15.56527 -15.21768 -15.00471 -14.80128 -14.71409 -14.24357 -14.18661 -14.01462 -13.97376 -13.58108 -13.51137 -13.30516 -13.24776 -13.15919 -13.10871 -13.02166 -12.59597 -12.31768 -12.19786 -12.08600 -12.00349 -11.81846 -11.44142 -11.29067 -11.05326 -10.62928 -10.59611 -10.26174 -10.19172 -9.81414 -9.52595 -5.00885 -0.73436 -0.38868 -0.02910 0.45254 0.50528 1.15848 1.58768 1.84406 1.89717 2.25788 2.63936 2.85653 3.19970 3.27340 3.56972 3.61286 3.63423 3.67424 3.78815 3.91817 3.96842 4.01024 4.07560 4.12352 4.14068 4.17655 4.26765 4.26963 4.29011 4.43962 4.48353 4.53373 4.63935 4.64525 4.67536 4.77061 4.86431 4.88631 4.97456 4.99535 5.01568 5.13207 5.14300 5.16938 5.17617 5.28908 5.52609 5.60455 5.60701 5.65119 5.79707 6.04827 6.13883 6.89781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.538 6.538 2 C -0.127 4.127 3 Si 0.782 3.218 4 C 0.012 3.988 5 C -0.668 4.668 6 S 2.700 3.300 7 O -0.992 6.992 8 O -0.953 6.953 9 N -1.103 6.103 10 C 0.120 3.880 11 C -0.109 4.109 12 H 0.111 0.889 13 C -0.128 4.128 14 C -0.075 4.075 15 H 0.106 0.894 16 C -0.075 4.075 17 C -0.128 4.128 18 C -0.131 4.131 19 C -0.140 4.140 20 C -0.131 4.131 21 C -0.131 4.131 22 C -0.123 4.123 23 C -0.036 4.036 24 C -0.135 4.135 25 C -0.059 4.059 26 C -0.164 4.164 27 H 0.400 0.600 28 H 0.092 0.908 29 H -0.284 1.284 30 H -0.273 1.273 31 H 0.431 0.569 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.131 0.869 37 H 0.131 0.869 38 H 0.130 0.870 39 H 0.132 0.868 40 H 0.132 0.868 41 H 0.084 0.916 42 H 0.076 0.924 43 H 0.151 0.849 44 H 0.164 0.836 45 H 0.161 0.839 46 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.378 3.914 -2.849 6.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.347 6.347 2 C -0.236 4.236 3 Si 0.685 3.315 4 C 0.011 3.989 5 C -0.755 4.755 6 S 2.790 3.210 7 O -0.982 6.982 8 O -0.943 6.943 9 N -0.868 5.868 10 C -0.006 4.006 11 C -0.129 4.129 12 H 0.129 0.871 13 C -0.165 4.165 14 C -0.093 4.093 15 H 0.124 0.876 16 C -0.075 4.075 17 C -0.145 4.145 18 C -0.149 4.149 19 C -0.158 4.158 20 C -0.148 4.148 21 C -0.149 4.149 22 C -0.161 4.161 23 C -0.056 4.056 24 C -0.154 4.154 25 C -0.077 4.077 26 C -0.182 4.182 27 H 0.250 0.750 28 H 0.110 0.890 29 H -0.212 1.212 30 H -0.199 1.199 31 H 0.269 0.731 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.103 0.897 35 H 0.105 0.895 36 H 0.149 0.851 37 H 0.149 0.851 38 H 0.148 0.852 39 H 0.150 0.850 40 H 0.150 0.850 41 H 0.103 0.897 42 H 0.095 0.905 43 H 0.169 0.831 44 H 0.181 0.819 45 H 0.179 0.821 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 4.259 3.509 -1.745 5.788 hybrid contribution 0.492 0.080 0.490 0.699 sum 4.751 3.589 -1.255 6.085 Atomic orbital electron populations 1.86651 1.15069 1.77419 1.55526 1.25346 0.88126 1.13608 0.96477 0.93972 0.78115 0.74307 0.85101 1.19238 0.92957 0.91716 0.94996 1.30810 1.18976 1.06329 1.19359 1.01560 0.73085 0.72945 0.73381 1.93542 1.86737 1.33434 1.84476 1.93662 1.39396 1.78269 1.82934 1.55296 1.22802 1.76964 1.31727 1.21510 0.79479 1.00541 0.99032 1.22710 0.96267 0.98163 0.95735 0.87059 1.23230 0.96318 0.95891 1.01033 1.21532 0.90620 0.96749 1.00397 0.87624 1.19932 0.96033 0.97802 0.93773 1.21202 0.97055 0.98653 0.97633 1.21410 0.94081 0.99824 0.99603 1.21423 1.00235 1.00195 0.93930 1.21435 0.97334 0.98093 0.97986 1.21340 0.93831 1.00183 0.99515 1.23056 0.95098 0.98406 0.99575 1.21335 0.91410 1.01358 0.91456 1.21726 0.99700 0.94317 0.99633 1.21826 0.93407 0.95277 0.97195 1.21402 1.01949 1.00147 0.94717 0.74950 0.89022 1.21187 1.19878 0.73117 0.90746 0.90503 0.89697 0.89460 0.85138 0.85144 0.85156 0.84989 0.85023 0.89730 0.90539 0.83109 0.81893 0.82109 0.84920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -1.74 10.64 -127.57 -1.36 -3.10 16 2 C -0.13 -0.03 1.87 71.24 0.13 0.10 16 3 Si 0.78 -2.80 30.16 68.60 2.07 -0.73 16 4 C 0.01 0.06 5.28 -19.87 -0.10 -0.05 16 5 C -0.67 -3.70 5.85 22.27 0.13 -3.57 16 6 S 2.70 15.94 4.98 -56.49 -0.28 15.66 16 7 O -0.99 -11.53 16.50 -128.00 -2.11 -13.64 16 8 O -0.95 -10.46 15.04 -119.21 -1.79 -12.26 16 9 N -1.10 2.90 4.70 -187.50 -0.88 2.02 16 10 C 0.12 -0.51 6.04 86.38 0.52 0.01 16 11 C -0.11 0.72 3.78 -10.27 -0.04 0.68 16 12 H 0.11 -0.87 8.14 -2.39 -0.02 -0.89 16 13 C -0.13 0.87 7.01 31.12 0.22 1.09 16 14 C -0.07 0.34 3.98 -11.01 -0.04 0.30 16 15 H 0.11 -0.60 8.09 -2.39 -0.02 -0.62 16 16 C -0.08 0.04 5.29 -19.87 -0.11 -0.06 16 17 C -0.13 0.02 8.63 22.27 0.19 0.21 16 18 C -0.13 -0.10 10.05 22.27 0.22 0.13 16 19 C -0.14 -0.16 10.05 22.27 0.22 0.07 16 20 C -0.13 -0.12 10.05 22.27 0.22 0.10 16 21 C -0.13 -0.05 9.71 22.27 0.22 0.16 16 22 C -0.12 0.62 7.11 31.12 0.22 0.84 16 23 C -0.04 -0.14 9.55 22.27 0.21 0.07 16 24 C -0.14 -0.03 10.05 22.27 0.22 0.20 16 25 C -0.06 -0.01 10.05 22.27 0.22 0.21 16 26 C -0.16 -0.57 8.66 22.27 0.19 -0.37 16 27 H 0.40 -2.74 8.62 -74.05 -0.64 -3.38 16 28 H 0.09 -0.42 5.80 -2.39 -0.01 -0.44 16 29 H -0.28 -0.75 6.72 99.48 0.67 -0.08 16 30 H -0.27 0.01 7.11 99.48 0.71 0.71 16 31 H 0.43 -3.17 8.37 -96.74 -0.81 -3.98 16 32 H 0.07 -0.44 7.84 -2.38 -0.02 -0.46 16 33 H 0.08 -0.19 7.79 -2.39 -0.02 -0.21 16 34 H 0.08 -0.72 8.14 -2.39 -0.02 -0.74 16 35 H 0.09 -0.57 6.06 -2.39 -0.01 -0.58 16 36 H 0.13 -0.42 6.65 -2.91 -0.02 -0.44 16 37 H 0.13 -0.30 8.06 -2.91 -0.02 -0.32 16 38 H 0.13 -0.25 8.06 -2.91 -0.02 -0.27 16 39 H 0.13 -0.29 8.06 -2.91 -0.02 -0.32 16 40 H 0.13 -0.35 8.05 -2.91 -0.02 -0.38 16 41 H 0.08 -0.37 7.69 -2.39 -0.02 -0.39 16 42 H 0.08 -0.38 8.14 -2.39 -0.02 -0.40 16 43 H 0.15 0.33 7.34 -2.91 -0.02 0.31 16 44 H 0.16 -0.92 8.06 -2.91 -0.02 -0.94 16 45 H 0.16 -0.92 8.06 -2.91 -0.02 -0.94 16 46 H 0.13 0.25 4.91 -2.91 -0.01 0.24 16 Total: 0.00 -24.51 380.73 -1.92 -26.44 By element: Atomic # 1 Polarization: -14.09 SS G_CDS: -0.43 Total: -14.52 kcal Atomic # 6 Polarization: -2.74 SS G_CDS: 2.86 Total: 0.12 kcal Atomic # 7 Polarization: 2.90 SS G_CDS: -0.88 Total: 2.02 kcal Atomic # 8 Polarization: -23.73 SS G_CDS: -5.26 Total: -28.99 kcal Atomic # 14 Polarization: -2.80 SS G_CDS: 2.07 Total: -0.73 kcal Atomic # 16 Polarization: 15.94 SS G_CDS: -0.28 Total: 15.66 kcal Total: -24.51 -1.92 -26.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_12130088_2726874.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.080 kcal (2) G-P(sol) polarization free energy of solvation -24.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds