Wall clock time and date at job start Fri Mar 5 2021 23:16:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.34780 * 1 3 3 O 1.21275 * 119.99941 * 2 1 4 4 C 1.50698 * 119.99784 * 179.97438 * 2 1 3 5 5 H 1.08997 * 112.85417 * 48.80635 * 4 2 1 6 6 C 1.53781 * 113.61342 * 180.02562 * 4 2 1 7 7 C 1.53786 * 87.17350 * 140.02323 * 6 4 2 8 8 H 1.09000 * 113.61138 * 220.06261 * 7 6 4 9 9 N 1.46496 * 113.61518 * 89.15486 * 7 6 4 10 10 S 1.65600 * 119.99627 * 145.00034 * 9 7 6 11 11 O 1.42098 * 106.40213 * 178.54203 * 10 9 7 12 12 O 1.42103 * 106.40185 * 311.46217 * 10 9 7 13 13 C 1.76198 * 107.21815 * 65.00124 * 10 9 7 14 14 C 1.33390 * 125.19989 * 179.71597 * 13 10 9 15 15 C 1.50699 * 122.54447 * 0.02562 * 14 13 10 16 16 O 1.42897 * 109.47184 * 74.99892 * 15 14 13 17 17 Si 1.86298 * 109.47477 * 195.00073 * 15 14 13 18 18 C 1.38427 * 114.91823 * 179.86238 * 14 13 10 19 19 C 1.33391 * 114.92079 * 0.42992 * 18 14 13 20 20 S 1.75884 * 125.20440 * 0.02562 * 13 10 9 21 21 C 1.53782 * 113.68885 * 277.53856 * 4 2 1 22 22 H 0.96998 * 119.99994 * 179.97438 * 1 2 3 23 23 H 0.96998 * 119.99438 * 0.02562 * 1 2 3 24 24 H 1.09002 * 113.61445 * 254.61323 * 6 4 2 25 25 H 1.09002 * 113.61408 * 25.43053 * 6 4 2 26 26 H 0.96997 * 120.00120 * 325.00538 * 9 7 6 27 27 H 1.09003 * 109.46747 * 315.00037 * 15 14 13 28 28 H 0.96702 * 114.00227 * 59.99706 * 16 15 14 29 29 H 1.48493 * 110.00223 * 179.97438 * 17 15 14 30 30 H 1.48501 * 109.99708 * 301.31660 * 17 15 14 31 31 H 1.08003 * 122.54315 * 180.20338 * 18 14 13 32 32 H 1.08004 * 125.20099 * 179.79222 * 19 18 14 33 33 H 1.08997 * 113.61668 * 334.55405 * 21 4 2 34 34 H 1.08994 * 113.61387 * 105.46140 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3478 0.0000 0.0000 3 8 1.9542 1.0503 0.0000 4 6 2.1012 -1.3051 0.0006 5 1 1.7400 -2.0028 -0.7549 6 6 3.6295 -1.1341 0.0011 7 6 3.6847 -2.3121 0.9883 8 1 4.4161 -2.1797 1.7855 9 7 3.7822 -3.6202 0.3361 10 16 4.6699 -4.8302 1.0362 11 8 4.5400 -5.9643 0.1900 12 8 5.9239 -4.2588 1.3830 13 6 3.8769 -5.2479 2.5532 14 6 4.2916 -6.1876 3.4043 15 6 5.5221 -7.0211 3.1551 16 8 6.6888 -6.2326 3.3982 17 14 5.5177 -8.4923 4.2980 18 6 3.5079 -6.3368 4.5356 19 6 2.4518 -5.5244 4.5988 20 16 2.4133 -4.4949 3.1732 21 6 2.2501 -1.9319 1.3969 22 1 -0.4850 -0.8400 -0.0004 23 1 -0.4849 0.8401 -0.0004 24 1 4.0933 -1.3491 -0.9616 25 1 3.9630 -0.1891 0.4299 26 1 3.3270 -3.7775 -0.5059 27 1 5.5248 -7.3646 2.1207 28 1 6.7526 -5.8925 4.3012 29 1 6.7259 -9.3227 4.0618 30 1 5.4819 -8.0374 5.7112 31 1 3.7323 -7.0588 5.3068 32 1 1.7308 -5.5020 5.4026 33 1 2.2068 -1.2056 2.2085 34 1 1.6001 -2.7912 1.5614 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV m_40_12220720_13652106.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 5 2021 23:16:49 Heat of formation + Delta-G solvation = -70.833510 kcal Electronic energy + Delta-G solvation = -23184.065568 eV Core-core repulsion = 19531.627242 eV Total energy + Delta-G solvation = -3652.438326 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 319.043 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.50550 -40.13469 -39.08644 -38.11631 -37.21452 -36.81078 -34.71715 -33.91877 -31.53837 -28.08391 -27.31826 -26.97962 -24.43102 -22.53923 -21.75841 -20.72615 -20.00072 -19.85929 -18.68285 -18.51627 -18.04909 -17.70494 -17.26468 -16.72379 -16.46926 -16.26293 -15.95333 -15.79533 -15.59527 -15.35007 -14.81955 -14.35543 -14.24183 -14.05308 -13.70762 -13.62894 -13.52895 -13.08314 -12.98178 -12.74250 -12.66225 -12.52026 -12.29129 -11.96534 -11.85748 -11.61443 -10.94499 -10.75467 -10.75320 -10.72034 -10.48876 -9.76616 -5.05701 -0.73783 -0.72839 0.14771 0.51772 1.11202 1.15660 1.48128 1.55025 1.81670 1.87478 2.46368 2.59400 3.15666 3.21328 3.23822 3.38093 3.44260 3.51918 3.69013 3.85158 3.93515 4.02829 4.10124 4.26873 4.32948 4.51363 4.55809 4.60724 4.65363 4.76398 4.88764 4.95687 5.16548 5.69984 5.72808 6.25607 6.31090 7.21003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.855 5.855 2 C 0.526 3.474 3 O -0.538 6.538 4 C -0.140 4.140 5 H 0.117 0.883 6 C -0.117 4.117 7 C 0.117 3.883 8 H 0.117 0.883 9 N -1.101 6.101 10 S 2.716 3.284 11 O -0.946 6.946 12 O -0.923 6.923 13 C -0.767 4.767 14 C 0.008 3.992 15 C -0.106 4.106 16 O -0.508 6.508 17 Si 0.710 3.290 18 C -0.163 4.163 19 C -0.167 4.167 20 S 0.208 5.792 21 C -0.141 4.141 22 H 0.402 0.598 23 H 0.402 0.598 24 H 0.086 0.914 25 H 0.113 0.887 26 H 0.422 0.578 27 H 0.127 0.873 28 H 0.379 0.621 29 H -0.248 1.248 30 H -0.253 1.253 31 H 0.156 0.844 32 H 0.178 0.822 33 H 0.105 0.895 34 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.065 -2.009 2.832 8.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C 0.311 3.689 3 O -0.414 6.414 4 C -0.162 4.162 5 H 0.135 0.865 6 C -0.156 4.156 7 C 0.008 3.992 8 H 0.135 0.865 9 N -0.860 5.860 10 S 2.800 3.200 11 O -0.936 6.936 12 O -0.913 6.913 13 C -0.967 4.967 14 C -0.009 4.009 15 C -0.217 4.217 16 O -0.314 6.314 17 Si 0.609 3.391 18 C -0.193 4.193 19 C -0.304 4.304 20 S 0.474 5.526 21 C -0.181 4.181 22 H 0.230 0.770 23 H 0.233 0.767 24 H 0.105 0.895 25 H 0.131 0.869 26 H 0.258 0.742 27 H 0.145 0.855 28 H 0.227 0.773 29 H -0.172 1.172 30 H -0.178 1.178 31 H 0.173 0.827 32 H 0.195 0.805 33 H 0.123 0.877 34 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -7.129 -1.189 2.218 7.560 hybrid contribution -0.107 -0.211 1.104 1.129 sum -7.236 -1.400 3.322 8.084 Atomic orbital electron populations 1.43920 1.07320 1.12661 1.77930 1.20433 0.82572 0.91086 0.74839 1.90776 1.68210 1.33454 1.49003 1.22817 0.97653 0.95534 1.00174 0.86506 1.23212 0.92838 0.98783 1.00815 1.21802 0.97823 0.82712 0.96819 0.86522 1.55452 1.71250 1.24175 1.35135 1.01626 0.73220 0.72685 0.72430 1.93635 1.86190 1.49262 1.64556 1.93671 1.36588 1.77353 1.83689 1.35715 1.16162 1.15716 1.29074 1.18966 0.96292 0.93350 0.92263 1.25351 0.83077 1.01865 1.11435 1.86790 1.40129 1.69180 1.35306 0.94605 0.88317 0.79167 0.77011 1.20333 0.96346 1.03135 0.99513 1.26231 1.02019 0.99475 1.02656 1.84135 1.19363 1.35551 1.13510 1.23552 0.97390 1.01172 0.96001 0.76976 0.76701 0.89520 0.86893 0.74246 0.85491 0.77334 1.17212 1.17782 0.82717 0.80499 0.87668 0.89675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 2.99 8.87 31.22 0.28 3.27 16 2 C 0.53 -0.18 7.63 -10.98 -0.08 -0.26 16 3 O -0.54 -2.43 16.74 5.56 0.09 -2.34 16 4 C -0.14 0.42 3.97 -90.96 -0.36 0.05 16 5 H 0.12 -0.60 8.12 -51.93 -0.42 -1.02 16 6 C -0.12 0.18 7.18 -25.92 -0.19 0.00 16 7 C 0.12 -0.25 3.91 -67.04 -0.26 -0.51 16 8 H 0.12 -0.22 7.77 -51.93 -0.40 -0.63 16 9 N -1.10 1.87 5.54 -4.13 -0.02 1.85 16 10 S 2.72 5.50 5.04 -107.50 -0.54 4.96 16 11 O -0.95 -4.24 17.48 -57.17 -1.00 -5.24 16 12 O -0.92 -4.88 16.98 -59.41 -1.01 -5.89 16 13 C -0.77 -0.47 6.46 29.04 0.19 -0.28 16 14 C 0.01 0.00 5.13 -106.25 -0.55 -0.54 16 15 C -0.11 -0.12 2.33 36.01 0.08 -0.04 16 16 O -0.51 -1.34 12.32 -35.87 -0.44 -1.79 16 17 Si 0.71 -0.80 30.47 -169.99 -5.18 -5.98 16 18 C -0.16 0.25 8.74 -41.21 -0.36 -0.11 16 19 C -0.17 0.44 11.23 29.04 0.33 0.76 16 20 S 0.21 -0.49 19.56 -107.50 -2.10 -2.60 16 21 C -0.14 0.53 6.38 -25.84 -0.16 0.37 16 22 H 0.40 -2.58 8.83 -40.82 -0.36 -2.94 16 23 H 0.40 -1.45 8.93 -40.82 -0.36 -1.81 16 24 H 0.09 -0.16 8.14 -51.93 -0.42 -0.58 16 25 H 0.11 -0.03 7.43 -51.93 -0.39 -0.42 16 26 H 0.42 -1.63 8.80 -34.47 -0.30 -1.93 16 27 H 0.13 0.21 7.23 -51.93 -0.38 -0.17 16 28 H 0.38 -0.37 8.70 45.56 0.40 0.03 16 29 H -0.25 -0.49 7.11 56.52 0.40 -0.08 16 30 H -0.25 0.11 6.80 56.52 0.38 0.50 16 31 H 0.16 -0.50 5.54 -52.48 -0.29 -0.79 16 32 H 0.18 -0.94 8.06 -52.48 -0.42 -1.36 16 33 H 0.10 -0.41 8.10 -51.93 -0.42 -0.83 16 34 H 0.08 -0.44 6.26 -51.93 -0.33 -0.77 16 LS Contribution 311.77 15.07 4.70 4.70 Total: 0.00 -12.52 311.77 -9.91 -22.43 By element: Atomic # 1 Polarization: -9.49 SS G_CDS: -3.31 Total: -12.80 kcal Atomic # 6 Polarization: 0.80 SS G_CDS: -1.37 Total: -0.57 kcal Atomic # 7 Polarization: 4.86 SS G_CDS: 0.25 Total: 5.11 kcal Atomic # 8 Polarization: -12.89 SS G_CDS: -2.36 Total: -15.25 kcal Atomic # 14 Polarization: -0.80 SS G_CDS: -5.18 Total: -5.98 kcal Atomic # 16 Polarization: 5.01 SS G_CDS: -2.64 Total: 2.36 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -12.52 -9.91 -22.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_12220720_13652106.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.405 kcal (2) G-P(sol) polarization free energy of solvation -12.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds