Wall clock time and date at job start Fri Mar 5 2021 23:16:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.34780 * 1 3 3 O 1.21275 * 119.99941 * 2 1 4 4 C 1.50698 * 119.99784 * 179.97438 * 2 1 3 5 5 H 1.08997 * 112.85417 * 48.80635 * 4 2 1 6 6 C 1.53781 * 113.61342 * 180.02562 * 4 2 1 7 7 C 1.53786 * 87.17350 * 140.02323 * 6 4 2 8 8 H 1.09000 * 113.61138 * 220.06261 * 7 6 4 9 9 N 1.46496 * 113.61518 * 89.15486 * 7 6 4 10 10 S 1.65600 * 119.99627 * 145.00034 * 9 7 6 11 11 O 1.42098 * 106.40213 * 178.54203 * 10 9 7 12 12 O 1.42103 * 106.40185 * 311.46217 * 10 9 7 13 13 C 1.76198 * 107.21815 * 65.00124 * 10 9 7 14 14 C 1.33390 * 125.19989 * 179.71597 * 13 10 9 15 15 C 1.50699 * 122.54447 * 0.02562 * 14 13 10 16 16 O 1.42897 * 109.47184 * 74.99892 * 15 14 13 17 17 Si 1.86298 * 109.47477 * 195.00073 * 15 14 13 18 18 C 1.38427 * 114.91823 * 179.86238 * 14 13 10 19 19 C 1.33391 * 114.92079 * 0.42992 * 18 14 13 20 20 S 1.75884 * 125.20440 * 0.02562 * 13 10 9 21 21 C 1.53782 * 113.68885 * 277.53856 * 4 2 1 22 22 H 0.96998 * 119.99994 * 179.97438 * 1 2 3 23 23 H 0.96998 * 119.99438 * 0.02562 * 1 2 3 24 24 H 1.09002 * 113.61445 * 254.61323 * 6 4 2 25 25 H 1.09002 * 113.61408 * 25.43053 * 6 4 2 26 26 H 0.96997 * 120.00120 * 325.00538 * 9 7 6 27 27 H 1.09003 * 109.46747 * 315.00037 * 15 14 13 28 28 H 0.96702 * 114.00227 * 59.99706 * 16 15 14 29 29 H 1.48493 * 110.00223 * 179.97438 * 17 15 14 30 30 H 1.48501 * 109.99708 * 301.31660 * 17 15 14 31 31 H 1.08003 * 122.54315 * 180.20338 * 18 14 13 32 32 H 1.08004 * 125.20099 * 179.79222 * 19 18 14 33 33 H 1.08997 * 113.61668 * 334.55405 * 21 4 2 34 34 H 1.08994 * 113.61387 * 105.46140 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3478 0.0000 0.0000 3 8 1.9542 1.0503 0.0000 4 6 2.1012 -1.3051 0.0006 5 1 1.7400 -2.0028 -0.7549 6 6 3.6295 -1.1341 0.0011 7 6 3.6847 -2.3121 0.9883 8 1 4.4161 -2.1797 1.7855 9 7 3.7822 -3.6202 0.3361 10 16 4.6699 -4.8302 1.0362 11 8 4.5400 -5.9643 0.1900 12 8 5.9239 -4.2588 1.3830 13 6 3.8769 -5.2479 2.5532 14 6 4.2916 -6.1876 3.4043 15 6 5.5221 -7.0211 3.1551 16 8 6.6888 -6.2326 3.3982 17 14 5.5177 -8.4923 4.2980 18 6 3.5079 -6.3368 4.5356 19 6 2.4518 -5.5244 4.5988 20 16 2.4133 -4.4949 3.1732 21 6 2.2501 -1.9319 1.3969 22 1 -0.4850 -0.8400 -0.0004 23 1 -0.4849 0.8401 -0.0004 24 1 4.0933 -1.3491 -0.9616 25 1 3.9630 -0.1891 0.4299 26 1 3.3270 -3.7775 -0.5059 27 1 5.5248 -7.3646 2.1207 28 1 6.7526 -5.8925 4.3012 29 1 6.7259 -9.3227 4.0618 30 1 5.4819 -8.0374 5.7112 31 1 3.7323 -7.0588 5.3068 32 1 1.7308 -5.5020 5.4026 33 1 2.2068 -1.2056 2.2085 34 1 1.6001 -2.7912 1.5614 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_40_12220720_13652106.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 5 2021 23:16:48 Heat of formation + Delta-G solvation = -81.715889 kcal Electronic energy + Delta-G solvation = -23184.537463 eV Core-core repulsion = 19531.627242 eV Total energy + Delta-G solvation = -3652.910221 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 319.043 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.40284 -40.06959 -39.05209 -38.35253 -37.26314 -37.05256 -34.64842 -33.83295 -31.42522 -28.08710 -27.18172 -26.79175 -24.33107 -22.44235 -21.75722 -20.61396 -19.96624 -19.82104 -18.74422 -18.42462 -17.96419 -17.64975 -17.23426 -16.73018 -16.50555 -16.23734 -15.92378 -15.79146 -15.52461 -15.28275 -14.74281 -14.23662 -14.16921 -13.95043 -13.76599 -13.59192 -13.41355 -13.35022 -13.25655 -12.77704 -12.62398 -12.50645 -12.34709 -11.83548 -11.69558 -11.53047 -10.90652 -10.77574 -10.65534 -10.61854 -10.37177 -9.58365 -4.97723 -0.84100 -0.63314 0.25746 0.69930 1.15553 1.28936 1.53989 1.61508 1.81255 1.91387 2.49492 2.65120 3.20950 3.32788 3.37766 3.46763 3.48286 3.61901 3.89331 3.99727 4.04748 4.19941 4.32005 4.33565 4.54674 4.73001 4.74324 4.80673 4.86736 4.93402 5.00874 5.11126 5.31862 5.89673 5.91939 6.37351 6.49801 7.37161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.522 3.478 3 O -0.595 6.595 4 C -0.132 4.132 5 H 0.145 0.855 6 C -0.126 4.126 7 C 0.112 3.888 8 H 0.111 0.889 9 N -1.087 6.087 10 S 2.726 3.274 11 O -0.981 6.981 12 O -0.968 6.968 13 C -0.796 4.796 14 C 0.001 3.999 15 C -0.134 4.134 16 O -0.535 6.535 17 Si 0.801 3.199 18 C -0.177 4.177 19 C -0.156 4.156 20 S 0.250 5.750 21 C -0.129 4.129 22 H 0.419 0.581 23 H 0.404 0.596 24 H 0.086 0.914 25 H 0.096 0.904 26 H 0.433 0.567 27 H 0.110 0.890 28 H 0.390 0.610 29 H -0.297 1.297 30 H -0.251 1.251 31 H 0.173 0.827 32 H 0.210 0.790 33 H 0.109 0.891 34 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.673 -2.465 4.170 11.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.401 5.401 2 C 0.307 3.693 3 O -0.476 6.476 4 C -0.153 4.153 5 H 0.163 0.837 6 C -0.166 4.166 7 C 0.004 3.996 8 H 0.129 0.871 9 N -0.850 5.850 10 S 2.813 3.187 11 O -0.971 6.971 12 O -0.957 6.957 13 C -0.999 4.999 14 C -0.017 4.017 15 C -0.242 4.242 16 O -0.344 6.344 17 Si 0.701 3.299 18 C -0.206 4.206 19 C -0.294 4.294 20 S 0.517 5.483 21 C -0.170 4.170 22 H 0.250 0.750 23 H 0.235 0.765 24 H 0.104 0.896 25 H 0.114 0.886 26 H 0.272 0.728 27 H 0.128 0.872 28 H 0.240 0.760 29 H -0.225 1.225 30 H -0.176 1.176 31 H 0.190 0.810 32 H 0.227 0.773 33 H 0.128 0.872 34 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -9.791 -1.638 3.512 10.530 hybrid contribution 0.653 -0.017 0.670 0.936 sum -9.138 -1.654 4.183 10.185 Atomic orbital electron populations 1.43826 1.06470 1.13770 1.76058 1.20850 0.83351 0.91092 0.73961 1.90755 1.69469 1.35466 1.51913 1.22875 0.96103 0.94826 1.01530 0.83716 1.23210 0.94356 0.98166 1.00842 1.21872 0.99159 0.81926 0.96635 0.87099 1.55078 1.70879 1.23488 1.35559 1.00803 0.72985 0.72317 0.72557 1.93580 1.86736 1.50806 1.65961 1.93615 1.39648 1.78015 1.84454 1.35416 1.18374 1.17323 1.28782 1.19077 0.96186 0.93273 0.93184 1.25783 0.83246 1.03500 1.11697 1.86741 1.41098 1.69934 1.36618 0.93613 0.85644 0.75510 0.75180 1.20453 0.96573 1.04285 0.99278 1.26714 1.01765 0.97980 1.02897 1.83868 1.16792 1.34569 1.13085 1.23535 0.96075 1.01715 0.95628 0.74991 0.76499 0.89575 0.88565 0.72848 0.87188 0.75990 1.22473 1.17607 0.80962 0.77272 0.87247 0.87618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 6.80 8.87 -173.53 -1.54 5.26 16 2 C 0.52 -0.46 7.63 87.66 0.67 0.21 16 3 O -0.60 -6.11 16.74 -3.02 -0.05 -6.16 16 4 C -0.13 0.88 3.97 -11.01 -0.04 0.84 16 5 H 0.15 -1.79 8.12 -2.39 -0.02 -1.81 16 6 C -0.13 0.29 7.18 31.12 0.22 0.51 16 7 C 0.11 -0.44 3.91 45.57 0.18 -0.26 16 8 H 0.11 -0.29 7.77 -2.39 -0.02 -0.31 16 9 N -1.09 3.15 5.54 -166.99 -0.93 2.23 16 10 S 2.73 15.67 5.04 -56.49 -0.28 15.39 16 11 O -0.98 -10.93 17.48 -128.00 -2.24 -13.16 16 12 O -0.97 -12.87 16.98 -125.86 -2.14 -15.01 16 13 C -0.80 -1.21 6.46 66.72 0.43 -0.78 16 14 C 0.00 0.00 5.13 -20.92 -0.11 -0.11 16 15 C -0.13 -0.51 2.33 71.24 0.17 -0.35 16 16 O -0.54 -4.02 12.32 -148.36 -1.83 -5.85 16 17 Si 0.80 -1.65 30.47 68.60 2.09 0.44 16 18 C -0.18 0.83 8.74 21.22 0.19 1.01 16 19 C -0.16 1.25 11.23 66.72 0.75 2.00 16 20 S 0.25 -1.64 19.56 -56.49 -1.10 -2.75 16 21 C -0.13 1.13 6.38 31.17 0.20 1.33 16 22 H 0.42 -6.26 8.83 -92.71 -0.82 -7.08 16 23 H 0.40 -3.21 8.93 -92.71 -0.83 -4.04 16 24 H 0.09 -0.22 8.14 -2.39 -0.02 -0.23 16 25 H 0.10 0.15 7.43 -2.39 -0.02 0.13 16 26 H 0.43 -3.36 8.80 -96.75 -0.85 -4.21 16 27 H 0.11 0.68 7.23 -2.39 -0.02 0.66 16 28 H 0.39 -0.08 8.70 -74.06 -0.64 -0.73 16 29 H -0.30 -1.72 7.11 99.48 0.71 -1.01 16 30 H -0.25 0.62 6.80 99.48 0.68 1.29 16 31 H 0.17 -1.51 5.54 -2.91 -0.02 -1.53 16 32 H 0.21 -3.11 8.06 -2.91 -0.02 -3.13 16 33 H 0.11 -0.98 8.10 -2.39 -0.02 -1.00 16 34 H 0.11 -1.36 6.26 -2.39 -0.01 -1.38 16 Total: 0.00 -32.28 311.77 -7.29 -39.57 By element: Atomic # 1 Polarization: -22.44 SS G_CDS: -1.92 Total: -24.36 kcal Atomic # 6 Polarization: 1.76 SS G_CDS: 2.65 Total: 4.41 kcal Atomic # 7 Polarization: 9.96 SS G_CDS: -2.47 Total: 7.49 kcal Atomic # 8 Polarization: -33.93 SS G_CDS: -6.25 Total: -40.18 kcal Atomic # 14 Polarization: -1.65 SS G_CDS: 2.09 Total: 0.44 kcal Atomic # 16 Polarization: 14.03 SS G_CDS: -1.39 Total: 12.64 kcal Total: -32.28 -7.29 -39.57 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_12220720_13652106.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.143 kcal (2) G-P(sol) polarization free energy of solvation -32.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds