Wall clock time and date at job start Fri Mar 5 2021 23:16:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.34778 * 1 3 3 O 1.21282 * 120.00629 * 2 1 4 4 C 1.50701 * 119.99664 * 180.02562 * 2 1 3 5 5 H 1.09002 * 112.90443 * 311.24785 * 4 2 1 6 6 C 1.53781 * 113.62042 * 82.49991 * 4 2 1 7 7 C 1.53776 * 87.08011 * 139.98075 * 6 4 2 8 8 H 1.09006 * 113.68873 * 220.00812 * 7 6 4 9 9 N 1.46500 * 113.61451 * 89.12113 * 7 6 4 10 10 S 1.65602 * 120.00289 * 116.85861 * 9 7 6 11 11 O 1.42102 * 106.40153 * 312.19434 * 10 9 7 12 12 O 1.42100 * 106.40138 * 179.27232 * 10 9 7 13 13 C 1.76196 * 107.21594 * 65.73142 * 10 9 7 14 14 C 1.33386 * 122.53917 * 66.72064 * 13 10 9 15 15 C 1.50702 * 125.20626 * 359.93791 * 14 13 10 16 16 O 1.42902 * 109.46753 * 313.60547 * 15 14 13 17 17 Si 1.86297 * 109.47513 * 193.60713 * 15 14 13 18 18 S 1.75884 * 109.59504 * 179.97438 * 14 13 10 19 19 C 1.75883 * 90.96962 * 359.82808 * 18 14 13 20 20 C 1.33384 * 109.59359 * 0.29896 * 19 18 14 21 21 C 1.53774 * 87.08433 * 334.56850 * 7 6 4 22 22 H 0.96993 * 120.00444 * 179.97438 * 1 2 3 23 23 H 0.97001 * 119.99482 * 359.97438 * 1 2 3 24 24 H 1.08997 * 113.60947 * 25.43089 * 6 4 2 25 25 H 1.08996 * 113.61405 * 254.53470 * 6 4 2 26 26 H 0.96999 * 119.99661 * 296.86318 * 9 7 6 27 27 H 1.08997 * 109.46737 * 73.60454 * 15 14 13 28 28 H 0.96697 * 114.00657 * 300.90264 * 16 15 14 29 29 H 1.48493 * 110.00010 * 179.97438 * 17 15 14 30 30 H 1.48501 * 109.99898 * 301.31727 * 17 15 14 31 31 H 1.08002 * 125.20323 * 180.18772 * 19 18 14 32 32 H 1.07997 * 122.54282 * 179.90211 * 20 19 18 33 33 H 1.09003 * 113.61629 * 139.97947 * 21 7 6 34 34 H 1.08996 * 113.61583 * 270.80103 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3478 0.0000 0.0000 3 8 1.9543 1.0503 0.0000 4 6 2.1012 -1.3052 -0.0006 5 1 1.7400 -2.0039 0.7540 6 6 2.2500 -1.9301 -1.3978 7 6 3.6824 -2.3114 -0.9885 8 1 4.4150 -2.1804 -1.7850 9 7 3.7779 -3.6203 -0.3373 10 16 4.6503 -4.8362 -1.0464 11 8 4.2445 -4.8801 -2.4076 12 8 4.5639 -5.9539 -0.1732 13 6 6.3393 -4.3345 -1.0468 14 6 7.0460 -4.1931 0.0756 15 6 6.5220 -4.4324 1.4682 16 8 5.2494 -3.7988 1.6136 17 14 7.7146 -3.7228 2.7110 18 16 8.6827 -3.6837 -0.3181 19 6 8.3055 -3.6966 -2.0360 20 6 7.0336 -4.0578 -2.2119 21 6 3.6295 -1.1342 -0.0005 22 1 -0.4850 -0.8399 -0.0004 23 1 -0.4849 0.8401 0.0004 24 1 2.2065 -1.2026 -2.2083 25 1 1.5998 -2.7891 -1.5633 26 1 3.3301 -3.7746 0.5091 27 1 6.4158 -5.5039 1.6372 28 1 5.2659 -2.8438 1.4629 29 1 7.2089 -3.9517 4.0883 30 1 9.0505 -4.3508 2.5490 31 1 8.9974 -3.4482 -2.8272 32 1 6.5810 -4.1330 -3.1896 33 1 4.0930 -1.3508 0.9620 34 1 3.9645 -0.1895 -0.4286 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV m_40_12220720_14772022.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 5 2021 23:16:52 Heat of formation + Delta-G solvation = -69.389293 kcal Electronic energy + Delta-G solvation = -23677.005779 eV Core-core repulsion = 20024.630079 eV Total energy + Delta-G solvation = -3652.375700 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 319.043 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.42380 -39.76103 -38.97688 -38.26426 -37.45271 -36.73284 -34.64170 -33.66569 -31.89612 -27.60179 -27.19262 -26.84013 -24.47520 -22.40901 -21.84734 -20.70109 -20.01786 -19.43135 -18.87998 -18.28591 -18.02559 -17.71716 -17.10187 -16.94771 -16.53656 -16.13521 -15.83109 -15.53221 -15.47530 -15.15860 -14.75070 -14.33022 -14.11680 -14.02725 -13.96310 -13.56187 -13.46513 -13.05730 -12.93046 -12.82782 -12.71979 -12.44156 -12.17095 -11.91789 -11.76714 -11.61482 -11.03649 -10.84721 -10.68421 -10.46918 -10.24396 -9.84637 -5.30034 -0.68047 -0.50445 0.27488 0.55917 0.97097 1.07877 1.41181 1.61709 1.74567 2.04601 2.53391 2.76112 3.02750 3.19334 3.26828 3.37575 3.51316 3.60962 3.74145 3.92186 4.08409 4.14609 4.17141 4.31554 4.44445 4.60227 4.65701 4.78347 4.82110 4.83995 4.86003 5.07937 5.26395 5.77432 6.00250 6.13917 6.32388 7.27028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.855 5.855 2 C 0.526 3.474 3 O -0.542 6.542 4 C -0.142 4.142 5 H 0.117 0.883 6 C -0.134 4.134 7 C 0.126 3.874 8 H 0.108 0.892 9 N -1.085 6.085 10 S 2.718 3.282 11 O -0.957 6.957 12 O -0.948 6.948 13 C -0.665 4.665 14 C -0.101 4.101 15 C -0.061 4.061 16 O -0.530 6.530 17 Si 0.667 3.333 18 S 0.157 5.843 19 C -0.210 4.210 20 C -0.077 4.077 21 C -0.123 4.123 22 H 0.403 0.597 23 H 0.401 0.599 24 H 0.098 0.902 25 H 0.087 0.913 26 H 0.425 0.575 27 H 0.149 0.851 28 H 0.381 0.619 29 H -0.226 1.226 30 H -0.234 1.234 31 H 0.176 0.824 32 H 0.159 0.841 33 H 0.082 0.918 34 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.035 2.973 1.064 3.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C 0.311 3.689 3 O -0.418 6.418 4 C -0.163 4.163 5 H 0.135 0.865 6 C -0.174 4.174 7 C 0.018 3.982 8 H 0.125 0.875 9 N -0.846 5.846 10 S 2.803 3.197 11 O -0.947 6.947 12 O -0.938 6.938 13 C -0.764 4.764 14 C -0.222 4.222 15 C -0.173 4.173 16 O -0.337 6.337 17 Si 0.565 3.435 18 S 0.420 5.580 19 C -0.346 4.346 20 C -0.105 4.105 21 C -0.162 4.162 22 H 0.231 0.769 23 H 0.232 0.768 24 H 0.117 0.883 25 H 0.105 0.895 26 H 0.263 0.737 27 H 0.165 0.835 28 H 0.231 0.769 29 H -0.149 1.149 30 H -0.158 1.158 31 H 0.193 0.807 32 H 0.176 0.824 33 H 0.100 0.900 34 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 2.074 2.368 2.203 3.842 hybrid contribution -1.483 -0.468 -0.811 1.754 sum 0.591 1.900 1.392 2.429 Atomic orbital electron populations 1.43927 1.07394 1.12658 1.77835 1.20491 0.82569 0.91168 0.74675 1.90762 1.68232 1.33540 1.49315 1.22820 0.97309 0.95399 1.00761 0.86526 1.23366 0.97601 1.01232 0.95159 1.21602 0.98282 0.82566 0.95753 0.87457 1.55437 1.66714 1.25636 1.36858 1.01386 0.72606 0.72509 0.73154 1.93600 1.80572 1.85814 1.34684 1.93600 1.86034 1.47579 1.66626 1.29974 1.28093 1.20759 0.97615 1.25066 0.98112 1.00085 0.98913 1.25034 0.93236 1.03743 0.95300 1.86561 1.27875 1.26381 1.92918 0.94909 0.77741 0.90620 0.80267 1.84491 1.09558 1.62204 1.01705 1.25923 1.00403 1.09172 0.99108 1.19786 0.93406 0.99051 0.98299 1.23310 0.93346 0.99189 1.00356 0.76921 0.76790 0.88316 0.89472 0.73672 0.83451 0.76871 1.14883 1.15788 0.80694 0.82355 0.89961 0.87116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 2.66 8.87 31.22 0.28 2.94 16 2 C 0.53 -0.21 7.63 -10.98 -0.08 -0.29 16 3 O -0.54 -2.22 16.74 5.56 0.09 -2.13 16 4 C -0.14 0.46 3.97 -90.96 -0.36 0.10 16 5 H 0.12 -0.59 8.11 -51.93 -0.42 -1.01 16 6 C -0.13 0.41 7.43 -25.92 -0.19 0.21 16 7 C 0.13 -0.41 4.43 -67.12 -0.30 -0.71 16 8 H 0.11 -0.38 8.05 -51.93 -0.42 -0.80 16 9 N -1.09 2.71 3.69 -4.20 -0.02 2.69 16 10 S 2.72 3.52 4.88 -107.50 -0.52 3.00 16 11 O -0.96 -3.85 17.09 -57.17 -0.98 -4.83 16 12 O -0.95 -4.20 16.67 -60.84 -1.01 -5.21 16 13 C -0.67 -0.22 5.78 -41.21 -0.24 -0.46 16 14 C -0.10 0.06 5.74 -36.00 -0.21 -0.15 16 15 C -0.06 0.08 2.08 36.01 0.07 0.15 16 16 O -0.53 1.45 8.59 -39.23 -0.34 1.11 16 17 Si 0.67 -1.54 31.08 -169.99 -5.28 -6.82 16 18 S 0.16 -0.20 20.70 -107.50 -2.23 -2.43 16 19 C -0.21 0.24 11.23 29.04 0.33 0.57 16 20 C -0.08 0.00 9.70 -41.21 -0.40 -0.40 16 21 C -0.12 0.44 7.16 -25.92 -0.19 0.26 16 22 H 0.40 -2.31 8.83 -40.82 -0.36 -2.67 16 23 H 0.40 -1.31 8.93 -40.82 -0.36 -1.67 16 24 H 0.10 -0.27 8.09 -51.93 -0.42 -0.69 16 25 H 0.09 -0.28 8.14 -51.93 -0.42 -0.70 16 26 H 0.43 -1.61 7.65 -34.47 -0.26 -1.87 16 27 H 0.15 -0.03 7.75 -51.93 -0.40 -0.43 16 28 H 0.38 -2.35 6.69 45.56 0.30 -2.04 16 29 H -0.23 -0.04 7.11 56.52 0.40 0.36 16 30 H -0.23 0.07 7.11 56.52 0.40 0.47 16 31 H 0.18 -0.58 8.06 -52.49 -0.42 -1.00 16 32 H 0.16 -0.11 7.74 -52.49 -0.41 -0.51 16 33 H 0.08 -0.45 6.51 -51.93 -0.34 -0.79 16 34 H 0.11 -0.25 7.44 -51.93 -0.39 -0.63 16 LS Contribution 309.65 15.07 4.67 4.67 Total: 0.00 -11.29 309.65 -10.42 -21.72 By element: Atomic # 1 Polarization: -10.47 SS G_CDS: -3.52 Total: -13.99 kcal Atomic # 6 Polarization: 0.86 SS G_CDS: -1.56 Total: -0.71 kcal Atomic # 7 Polarization: 5.37 SS G_CDS: 0.26 Total: 5.63 kcal Atomic # 8 Polarization: -8.82 SS G_CDS: -2.24 Total: -11.06 kcal Atomic # 14 Polarization: -1.54 SS G_CDS: -5.28 Total: -6.82 kcal Atomic # 16 Polarization: 3.32 SS G_CDS: -2.75 Total: 0.57 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -11.29 -10.42 -21.72 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_12220720_14772022.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.672 kcal (2) G-P(sol) polarization free energy of solvation -11.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds