Wall clock time and date at job start Fri Mar 5 2021 23:16:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.34778 * 1 3 3 O 1.21282 * 120.00629 * 2 1 4 4 C 1.50701 * 119.99664 * 180.02562 * 2 1 3 5 5 H 1.09002 * 112.90443 * 311.24785 * 4 2 1 6 6 C 1.53781 * 113.62042 * 82.49991 * 4 2 1 7 7 C 1.53776 * 87.08011 * 139.98075 * 6 4 2 8 8 H 1.09006 * 113.68873 * 220.00812 * 7 6 4 9 9 N 1.46500 * 113.61451 * 89.12113 * 7 6 4 10 10 S 1.65602 * 120.00289 * 116.85861 * 9 7 6 11 11 O 1.42102 * 106.40153 * 312.19434 * 10 9 7 12 12 O 1.42100 * 106.40138 * 179.27232 * 10 9 7 13 13 C 1.76196 * 107.21594 * 65.73142 * 10 9 7 14 14 C 1.33386 * 122.53917 * 66.72064 * 13 10 9 15 15 C 1.50702 * 125.20626 * 359.93791 * 14 13 10 16 16 O 1.42902 * 109.46753 * 313.60547 * 15 14 13 17 17 Si 1.86297 * 109.47513 * 193.60713 * 15 14 13 18 18 S 1.75884 * 109.59504 * 179.97438 * 14 13 10 19 19 C 1.75883 * 90.96962 * 359.82808 * 18 14 13 20 20 C 1.33384 * 109.59359 * 0.29896 * 19 18 14 21 21 C 1.53774 * 87.08433 * 334.56850 * 7 6 4 22 22 H 0.96993 * 120.00444 * 179.97438 * 1 2 3 23 23 H 0.97001 * 119.99482 * 359.97438 * 1 2 3 24 24 H 1.08997 * 113.60947 * 25.43089 * 6 4 2 25 25 H 1.08996 * 113.61405 * 254.53470 * 6 4 2 26 26 H 0.96999 * 119.99661 * 296.86318 * 9 7 6 27 27 H 1.08997 * 109.46737 * 73.60454 * 15 14 13 28 28 H 0.96697 * 114.00657 * 300.90264 * 16 15 14 29 29 H 1.48493 * 110.00010 * 179.97438 * 17 15 14 30 30 H 1.48501 * 109.99898 * 301.31727 * 17 15 14 31 31 H 1.08002 * 125.20323 * 180.18772 * 19 18 14 32 32 H 1.07997 * 122.54282 * 179.90211 * 20 19 18 33 33 H 1.09003 * 113.61629 * 139.97947 * 21 7 6 34 34 H 1.08996 * 113.61583 * 270.80103 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3478 0.0000 0.0000 3 8 1.9543 1.0503 0.0000 4 6 2.1012 -1.3052 -0.0006 5 1 1.7400 -2.0039 0.7540 6 6 2.2500 -1.9301 -1.3978 7 6 3.6824 -2.3114 -0.9885 8 1 4.4150 -2.1804 -1.7850 9 7 3.7779 -3.6203 -0.3373 10 16 4.6503 -4.8362 -1.0464 11 8 4.2445 -4.8801 -2.4076 12 8 4.5639 -5.9539 -0.1732 13 6 6.3393 -4.3345 -1.0468 14 6 7.0460 -4.1931 0.0756 15 6 6.5220 -4.4324 1.4682 16 8 5.2494 -3.7988 1.6136 17 14 7.7146 -3.7228 2.7110 18 16 8.6827 -3.6837 -0.3181 19 6 8.3055 -3.6966 -2.0360 20 6 7.0336 -4.0578 -2.2119 21 6 3.6295 -1.1342 -0.0005 22 1 -0.4850 -0.8399 -0.0004 23 1 -0.4849 0.8401 0.0004 24 1 2.2065 -1.2026 -2.2083 25 1 1.5998 -2.7891 -1.5633 26 1 3.3301 -3.7746 0.5091 27 1 6.4158 -5.5039 1.6372 28 1 5.2659 -2.8438 1.4629 29 1 7.2089 -3.9517 4.0883 30 1 9.0505 -4.3508 2.5490 31 1 8.9974 -3.4482 -2.8272 32 1 6.5810 -4.1330 -3.1896 33 1 4.0930 -1.3508 0.9620 34 1 3.9645 -0.1895 -0.4286 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_40_12220720_14772022.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 5 2021 23:16:51 Heat of formation + Delta-G solvation = -76.739700 kcal Electronic energy + Delta-G solvation = -23677.324516 eV Core-core repulsion = 20024.630079 eV Total energy + Delta-G solvation = -3652.694437 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 319.043 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.28343 -39.67074 -38.90613 -38.37837 -37.38149 -36.93707 -34.56975 -33.53148 -31.79954 -27.52175 -27.01524 -26.58965 -24.39660 -22.27793 -21.82180 -20.58233 -19.94387 -19.31987 -18.86500 -18.16767 -17.97532 -17.62714 -17.02277 -16.82822 -16.40011 -16.12478 -15.80350 -15.42496 -15.38055 -15.13321 -14.62047 -14.24055 -14.04451 -13.90560 -13.85991 -13.57483 -13.27223 -13.24933 -13.14125 -12.83725 -12.63730 -12.39259 -12.13913 -11.71576 -11.56266 -11.50882 -10.89646 -10.80205 -10.58760 -10.31822 -10.17109 -9.75909 -5.13771 -0.69023 -0.49078 0.35774 0.64297 1.09033 1.12894 1.54965 1.68478 1.86910 2.07494 2.70445 2.74793 3.18780 3.31603 3.47286 3.52628 3.60407 3.83514 3.98236 4.09295 4.22494 4.25242 4.39543 4.41410 4.68415 4.75074 4.87369 4.93769 5.00381 5.06432 5.13137 5.15426 5.49681 5.94668 6.23490 6.51632 6.53847 7.41444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.520 3.480 3 O -0.593 6.593 4 C -0.136 4.136 5 H 0.141 0.859 6 C -0.135 4.135 7 C 0.126 3.874 8 H 0.111 0.889 9 N -1.069 6.069 10 S 2.729 3.271 11 O -0.989 6.989 12 O -0.984 6.984 13 C -0.672 4.672 14 C -0.105 4.105 15 C -0.070 4.070 16 O -0.534 6.534 17 Si 0.746 3.254 18 S 0.176 5.824 19 C -0.208 4.208 20 C -0.096 4.096 21 C -0.119 4.119 22 H 0.417 0.583 23 H 0.403 0.597 24 H 0.093 0.907 25 H 0.090 0.910 26 H 0.433 0.567 27 H 0.134 0.866 28 H 0.397 0.603 29 H -0.261 1.261 30 H -0.260 1.260 31 H 0.197 0.803 32 H 0.159 0.841 33 H 0.104 0.896 34 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.265 3.366 1.456 3.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.406 5.406 2 C 0.306 3.694 3 O -0.474 6.474 4 C -0.157 4.157 5 H 0.158 0.842 6 C -0.175 4.175 7 C 0.018 3.982 8 H 0.129 0.871 9 N -0.833 5.833 10 S 2.817 3.183 11 O -0.979 6.979 12 O -0.974 6.974 13 C -0.773 4.773 14 C -0.226 4.226 15 C -0.181 4.181 16 O -0.344 6.344 17 Si 0.646 3.354 18 S 0.439 5.561 19 C -0.344 4.344 20 C -0.123 4.123 21 C -0.158 4.158 22 H 0.247 0.753 23 H 0.233 0.767 24 H 0.112 0.888 25 H 0.109 0.891 26 H 0.274 0.726 27 H 0.151 0.849 28 H 0.249 0.751 29 H -0.185 1.185 30 H -0.185 1.185 31 H 0.214 0.786 32 H 0.177 0.823 33 H 0.123 0.877 34 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 2.230 2.738 2.579 4.373 hybrid contribution -1.571 -0.575 -0.924 1.911 sum 0.659 2.163 1.655 2.802 Atomic orbital electron populations 1.43890 1.06844 1.13579 1.76248 1.20981 0.83194 0.91405 0.73775 1.90738 1.69324 1.35400 1.51948 1.22909 0.97277 0.94337 1.01203 0.84170 1.23383 0.97713 1.01214 0.95226 1.21664 0.98425 0.82032 0.96087 0.87129 1.55069 1.66089 1.25161 1.37021 1.00659 0.72958 0.72492 0.72161 1.93556 1.81421 1.86511 1.36456 1.93551 1.86775 1.49894 1.67213 1.29775 1.27491 1.21793 0.98246 1.25210 0.98599 0.99794 0.98975 1.25157 0.94177 1.03415 0.95365 1.86530 1.27189 1.27813 1.92820 0.94052 0.74973 0.89216 0.77149 1.84438 1.08562 1.61510 1.01549 1.26222 1.00279 1.08060 0.99799 1.19892 0.94058 1.00077 0.98306 1.23280 0.93255 0.98119 1.01194 0.75254 0.76685 0.88806 0.89112 0.72634 0.84885 0.75055 1.18542 1.18537 0.78637 0.82307 0.87722 0.88403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 5.52 8.87 -173.53 -1.54 3.98 16 2 C 0.52 -0.40 7.63 87.66 0.67 0.26 16 3 O -0.59 -5.39 16.74 -3.04 -0.05 -5.44 16 4 C -0.14 0.98 3.97 -11.01 -0.04 0.94 16 5 H 0.14 -1.68 8.11 -2.39 -0.02 -1.70 16 6 C -0.14 0.86 7.43 31.12 0.23 1.09 16 7 C 0.13 -0.85 4.43 45.51 0.20 -0.65 16 8 H 0.11 -0.78 8.05 -2.38 -0.02 -0.80 16 9 N -1.07 5.60 3.69 -167.20 -0.62 4.98 16 10 S 2.73 9.08 4.88 -56.49 -0.28 8.80 16 11 O -0.99 -9.08 17.09 -128.00 -2.19 -11.27 16 12 O -0.98 -9.80 16.67 -124.50 -2.08 -11.88 16 13 C -0.67 -0.64 5.78 21.22 0.12 -0.52 16 14 C -0.10 0.13 5.74 24.59 0.14 0.28 16 15 C -0.07 0.18 2.08 71.24 0.15 0.33 16 16 O -0.53 3.21 8.59 -145.15 -1.25 1.97 16 17 Si 0.75 -3.66 31.08 68.60 2.13 -1.52 16 18 S 0.18 -0.58 20.70 -56.49 -1.17 -1.75 16 19 C -0.21 0.63 11.23 66.72 0.75 1.37 16 20 C -0.10 -0.01 9.70 21.22 0.21 0.20 16 21 C -0.12 0.93 7.16 31.12 0.22 1.16 16 22 H 0.42 -5.16 8.83 -92.71 -0.82 -5.98 16 23 H 0.40 -2.62 8.93 -92.71 -0.83 -3.45 16 24 H 0.09 -0.47 8.09 -2.39 -0.02 -0.49 16 25 H 0.09 -0.62 8.14 -2.39 -0.02 -0.64 16 26 H 0.43 -3.62 7.65 -96.74 -0.74 -4.36 16 27 H 0.13 0.06 7.75 -2.39 -0.02 0.04 16 28 H 0.40 -5.44 6.69 -74.06 -0.50 -5.93 16 29 H -0.26 -0.18 7.11 99.48 0.71 0.52 16 30 H -0.26 0.19 7.11 99.48 0.71 0.90 16 31 H 0.20 -1.55 8.06 -2.91 -0.02 -1.57 16 32 H 0.16 -0.10 7.74 -2.91 -0.02 -0.12 16 33 H 0.10 -1.32 6.51 -2.39 -0.02 -1.33 16 34 H 0.10 -0.41 7.44 -2.39 -0.02 -0.43 16 Total: 0.00 -27.00 309.65 -6.03 -33.03 By element: Atomic # 1 Polarization: -23.70 SS G_CDS: -1.64 Total: -25.35 kcal Atomic # 6 Polarization: 1.81 SS G_CDS: 2.65 Total: 4.45 kcal Atomic # 7 Polarization: 11.11 SS G_CDS: -2.16 Total: 8.96 kcal Atomic # 8 Polarization: -21.05 SS G_CDS: -5.56 Total: -26.61 kcal Atomic # 14 Polarization: -3.66 SS G_CDS: 2.13 Total: -1.52 kcal Atomic # 16 Polarization: 8.49 SS G_CDS: -1.45 Total: 7.05 kcal Total: -27.00 -6.03 -33.03 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_12220720_14772022.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.711 kcal (2) G-P(sol) polarization free energy of solvation -27.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds