Wall clock time and date at job start Fri Mar 5 2021 23:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.34777 * 1 3 3 O 1.21283 * 119.99750 * 2 1 4 4 C 1.50702 * 119.99928 * 180.28093 * 2 1 3 5 5 H 1.08997 * 112.84664 * 48.52304 * 4 2 1 6 6 C 1.53782 * 113.61352 * 179.72363 * 4 2 1 7 7 C 1.53780 * 87.08184 * 139.97796 * 6 4 2 8 8 H 1.08998 * 113.61774 * 220.01858 * 7 6 4 9 9 N 1.46500 * 113.61350 * 89.19736 * 7 6 4 10 10 S 1.65598 * 120.00069 * 145.00239 * 9 7 6 11 11 O 1.42101 * 106.40456 * 178.54566 * 10 9 7 12 12 O 1.42104 * 106.40002 * 311.45671 * 10 9 7 13 13 C 1.76196 * 107.21993 * 64.99839 * 10 9 7 14 14 C 1.33390 * 122.53995 * 269.71300 * 13 10 9 15 15 S 1.75886 * 109.59350 * 179.90358 * 14 13 10 16 16 C 1.75885 * 90.96852 * 0.30163 * 15 14 13 17 17 C 1.50708 * 125.20281 * 179.79169 * 16 15 14 18 18 O 1.42896 * 109.46954 * 120.04115 * 17 16 15 19 19 Si 1.86299 * 109.46823 * 0.04392 * 17 16 15 20 20 C 1.33388 * 109.59738 * 359.83176 * 16 15 14 21 21 C 1.53782 * 113.61231 * 277.21964 * 4 2 1 22 22 H 0.96999 * 120.00047 * 359.97438 * 1 2 3 23 23 H 0.97000 * 120.00317 * 180.02562 * 1 2 3 24 24 H 1.08999 * 113.60945 * 254.52748 * 6 4 2 25 25 H 1.08997 * 113.61431 * 25.34726 * 6 4 2 26 26 H 0.96997 * 120.00078 * 325.00213 * 9 7 6 27 27 H 1.07997 * 125.20570 * 0.02562 * 14 13 10 28 28 H 1.08995 * 109.47206 * 240.04426 * 17 16 15 29 29 H 0.96702 * 114.00075 * 300.00576 * 18 17 16 30 30 H 1.48498 * 110.00224 * 58.67936 * 19 17 16 31 31 H 1.48503 * 109.99686 * 179.97438 * 19 17 16 32 32 H 1.07994 * 122.54407 * 180.02562 * 20 16 15 33 33 H 1.09002 * 113.61515 * 334.56488 * 21 4 2 34 34 H 1.08999 * 113.61482 * 105.47097 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3478 0.0000 0.0000 3 8 1.9541 1.0504 0.0000 4 6 2.1013 -1.3051 -0.0064 5 1 1.7367 -2.0005 -0.7624 6 6 3.6295 -1.1340 -0.0124 7 6 3.6867 -2.3140 0.9721 8 1 4.4215 -2.1846 1.7667 9 7 3.7814 -3.6209 0.3169 10 16 4.6701 -4.8331 1.0119 11 8 4.5370 -5.9653 0.1635 12 8 5.9256 -4.2634 1.3561 13 6 3.8813 -5.2534 2.5303 14 6 4.1888 -4.6628 3.6861 15 16 3.1992 -5.3368 4.9745 16 6 2.4063 -6.4209 3.8389 17 6 1.3342 -7.4187 4.1944 18 8 0.1442 -7.1205 3.4616 19 14 0.9790 -7.3241 6.0208 20 6 2.8997 -6.2257 2.6151 21 6 2.2559 -1.9339 1.3884 22 1 -0.4850 0.8400 0.0004 23 1 -0.4850 -0.8400 0.0004 24 1 4.0890 -1.3479 -0.9774 25 1 3.9648 -0.1896 0.4161 26 1 3.3236 -3.7761 -0.5240 27 1 4.9305 -3.8879 3.8113 28 1 1.6743 -8.4229 3.9419 29 1 -0.2156 -6.2402 3.6371 30 1 0.5448 -5.9511 6.3834 31 1 -0.0772 -8.3028 6.3840 32 1 2.5588 -6.7835 1.7555 33 1 2.2158 -1.2088 2.2012 34 1 1.6065 -2.7935 1.5543 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV m_40_12220720_15065232.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 5 2021 23:16:56 Heat of formation + Delta-G solvation = -77.549809 kcal Electronic energy + Delta-G solvation = -22751.452894 eV Core-core repulsion = 19098.723328 eV Total energy + Delta-G solvation = -3652.729566 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 319.043 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.49247 -39.61216 -39.08081 -38.24421 -37.74193 -36.90760 -34.71985 -33.86604 -31.93622 -27.38970 -27.23955 -26.93776 -24.99382 -22.53223 -21.56362 -20.86257 -20.23348 -19.28602 -18.88367 -18.26048 -17.99826 -17.80089 -17.71318 -17.16372 -16.52456 -16.29505 -15.82612 -15.65999 -15.59469 -15.08731 -14.75968 -14.36143 -14.26827 -14.10340 -13.91328 -13.70318 -13.54743 -13.21468 -13.09695 -12.95933 -12.55765 -12.52763 -12.41788 -12.02048 -11.85299 -11.65248 -10.97665 -10.91927 -10.75750 -10.68586 -10.30861 -9.92997 -5.23603 -0.83374 -0.55773 0.22903 0.49436 0.91970 1.05277 1.37702 1.54240 1.74009 1.91055 2.46137 2.65735 3.08044 3.17248 3.19977 3.28309 3.46439 3.50962 3.64360 3.74170 3.88721 4.08060 4.15376 4.33513 4.34086 4.50953 4.54804 4.62697 4.68015 4.81637 4.87880 4.98885 5.16607 5.70207 5.74233 6.13266 6.24924 7.20245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.855 5.855 2 C 0.526 3.474 3 O -0.540 6.540 4 C -0.142 4.142 5 H 0.116 0.884 6 C -0.119 4.119 7 C 0.124 3.876 8 H 0.113 0.887 9 N -1.096 6.096 10 S 2.710 3.290 11 O -0.949 6.949 12 O -0.949 6.949 13 C -0.686 4.686 14 C -0.085 4.085 15 S 0.161 5.839 16 C -0.228 4.228 17 C -0.034 4.034 18 O -0.521 6.521 19 Si 0.652 3.348 20 C -0.042 4.042 21 C -0.139 4.139 22 H 0.402 0.598 23 H 0.402 0.598 24 H 0.085 0.915 25 H 0.111 0.889 26 H 0.421 0.579 27 H 0.186 0.814 28 H 0.130 0.870 29 H 0.377 0.623 30 H -0.240 1.240 31 H -0.233 1.233 32 H 0.157 0.843 33 H 0.099 0.901 34 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.880 -0.374 3.308 5.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C 0.310 3.690 3 O -0.416 6.416 4 C -0.163 4.163 5 H 0.134 0.866 6 C -0.159 4.159 7 C 0.016 3.984 8 H 0.130 0.870 9 N -0.855 5.855 10 S 2.797 3.203 11 O -0.939 6.939 12 O -0.939 6.939 13 C -0.785 4.785 14 C -0.225 4.225 15 S 0.425 5.575 16 C -0.345 4.345 17 C -0.146 4.146 18 O -0.327 6.327 19 Si 0.550 3.450 20 C -0.071 4.071 21 C -0.178 4.178 22 H 0.233 0.767 23 H 0.230 0.770 24 H 0.104 0.896 25 H 0.130 0.870 26 H 0.256 0.744 27 H 0.203 0.797 28 H 0.148 0.852 29 H 0.225 0.775 30 H -0.164 1.164 31 H -0.155 1.155 32 H 0.174 0.826 33 H 0.118 0.882 34 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -3.120 -0.352 5.129 6.014 hybrid contribution -1.847 0.342 -2.007 2.749 sum -4.967 -0.011 3.122 5.867 Atomic orbital electron populations 1.43925 1.07350 1.12645 1.77917 1.20472 0.82564 0.91149 0.74790 1.90774 1.68219 1.33487 1.49087 1.22820 0.97601 0.95457 1.00423 0.86619 1.23229 0.92872 0.98859 1.00914 1.21651 0.97637 0.82713 0.96433 0.86956 1.55381 1.70921 1.24084 1.35083 1.01626 0.73271 0.72469 0.72960 1.93626 1.86278 1.49136 1.64873 1.93626 1.37757 1.78113 1.84392 1.30023 1.16501 1.11324 1.20697 1.25942 1.00454 1.01031 0.95027 1.84433 1.30863 1.31023 1.11147 1.25013 1.06654 1.05785 0.97083 1.24412 0.83155 0.98955 1.08083 1.86653 1.40377 1.38839 1.66871 0.95176 0.90874 0.83228 0.75696 1.19591 0.93329 0.95765 0.98390 1.23432 0.97602 1.01199 0.95594 0.76732 0.76990 0.89620 0.87021 0.74393 0.79687 0.85194 0.77543 1.16388 1.15549 0.82558 0.88243 0.89695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 2.78 8.87 31.22 0.28 3.06 16 2 C 0.53 -0.12 7.63 -10.98 -0.08 -0.20 16 3 O -0.54 -2.47 16.74 5.55 0.09 -2.37 16 4 C -0.14 0.43 3.97 -90.96 -0.36 0.07 16 5 H 0.12 -0.57 8.12 -51.93 -0.42 -1.00 16 6 C -0.12 0.24 7.19 -25.92 -0.19 0.05 16 7 C 0.12 -0.38 4.50 -67.12 -0.30 -0.69 16 8 H 0.11 -0.41 7.77 -51.93 -0.40 -0.82 16 9 N -1.10 3.14 5.73 -4.20 -0.02 3.12 16 10 S 2.71 0.34 5.77 -107.50 -0.62 -0.28 16 11 O -0.95 -3.15 17.63 -57.17 -1.01 -4.16 16 12 O -0.95 -2.80 17.16 -57.17 -0.98 -3.78 16 13 C -0.69 0.59 5.86 -41.21 -0.24 0.34 16 14 C -0.09 0.16 10.70 29.04 0.31 0.47 16 15 S 0.16 -0.36 20.58 -107.50 -2.21 -2.57 16 16 C -0.23 0.29 5.72 -36.00 -0.21 0.09 16 17 C -0.03 0.06 2.96 36.01 0.11 0.16 16 18 O -0.52 0.37 12.86 -35.23 -0.45 -0.08 16 19 Si 0.65 -1.40 30.97 -169.99 -5.26 -6.67 16 20 C -0.04 0.02 9.56 -41.21 -0.39 -0.37 16 21 C -0.14 0.56 7.43 -25.92 -0.19 0.37 16 22 H 0.40 -1.35 8.93 -40.82 -0.36 -1.72 16 23 H 0.40 -2.44 8.83 -40.82 -0.36 -2.80 16 24 H 0.09 -0.18 8.14 -51.93 -0.42 -0.61 16 25 H 0.11 -0.07 7.43 -51.93 -0.39 -0.46 16 26 H 0.42 -1.91 8.80 -34.47 -0.30 -2.21 16 27 H 0.19 -0.71 8.00 -52.49 -0.42 -1.13 16 28 H 0.13 -0.29 7.96 -51.93 -0.41 -0.71 16 29 H 0.38 -1.44 8.70 45.56 0.40 -1.04 16 30 H -0.24 0.17 7.11 56.52 0.40 0.57 16 31 H -0.23 -0.17 7.11 56.52 0.40 0.24 16 32 H 0.16 -0.08 7.96 -52.49 -0.42 -0.50 16 33 H 0.10 -0.39 8.09 -51.93 -0.42 -0.81 16 34 H 0.08 -0.43 8.14 -51.93 -0.42 -0.85 16 LS Contribution 322.92 15.07 4.87 4.87 Total: 0.00 -12.00 322.92 -10.43 -22.43 By element: Atomic # 1 Polarization: -10.30 SS G_CDS: -3.56 Total: -13.85 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: -1.55 Total: 0.29 kcal Atomic # 7 Polarization: 5.92 SS G_CDS: 0.25 Total: 6.18 kcal Atomic # 8 Polarization: -8.05 SS G_CDS: -2.35 Total: -10.40 kcal Atomic # 14 Polarization: -1.40 SS G_CDS: -5.26 Total: -6.67 kcal Atomic # 16 Polarization: -0.02 SS G_CDS: -2.83 Total: -2.85 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -12.00 -10.43 -22.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_12220720_15065232.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.121 kcal (2) G-P(sol) polarization free energy of solvation -11.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds