Wall clock time and date at job start Fri Mar 5 2021 23:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.34777 * 1 3 3 O 1.21283 * 119.99750 * 2 1 4 4 C 1.50702 * 119.99928 * 180.28093 * 2 1 3 5 5 H 1.08997 * 112.84664 * 48.52304 * 4 2 1 6 6 C 1.53782 * 113.61352 * 179.72363 * 4 2 1 7 7 C 1.53780 * 87.08184 * 139.97796 * 6 4 2 8 8 H 1.08998 * 113.61774 * 220.01858 * 7 6 4 9 9 N 1.46500 * 113.61350 * 89.19736 * 7 6 4 10 10 S 1.65598 * 120.00069 * 145.00239 * 9 7 6 11 11 O 1.42101 * 106.40456 * 178.54566 * 10 9 7 12 12 O 1.42104 * 106.40002 * 311.45671 * 10 9 7 13 13 C 1.76196 * 107.21993 * 64.99839 * 10 9 7 14 14 C 1.33390 * 122.53995 * 269.71300 * 13 10 9 15 15 S 1.75886 * 109.59350 * 179.90358 * 14 13 10 16 16 C 1.75885 * 90.96852 * 0.30163 * 15 14 13 17 17 C 1.50708 * 125.20281 * 179.79169 * 16 15 14 18 18 O 1.42896 * 109.46954 * 120.04115 * 17 16 15 19 19 Si 1.86299 * 109.46823 * 0.04392 * 17 16 15 20 20 C 1.33388 * 109.59738 * 359.83176 * 16 15 14 21 21 C 1.53782 * 113.61231 * 277.21964 * 4 2 1 22 22 H 0.96999 * 120.00047 * 359.97438 * 1 2 3 23 23 H 0.97000 * 120.00317 * 180.02562 * 1 2 3 24 24 H 1.08999 * 113.60945 * 254.52748 * 6 4 2 25 25 H 1.08997 * 113.61431 * 25.34726 * 6 4 2 26 26 H 0.96997 * 120.00078 * 325.00213 * 9 7 6 27 27 H 1.07997 * 125.20570 * 0.02562 * 14 13 10 28 28 H 1.08995 * 109.47206 * 240.04426 * 17 16 15 29 29 H 0.96702 * 114.00075 * 300.00576 * 18 17 16 30 30 H 1.48498 * 110.00224 * 58.67936 * 19 17 16 31 31 H 1.48503 * 109.99686 * 179.97438 * 19 17 16 32 32 H 1.07994 * 122.54407 * 180.02562 * 20 16 15 33 33 H 1.09002 * 113.61515 * 334.56488 * 21 4 2 34 34 H 1.08999 * 113.61482 * 105.47097 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3478 0.0000 0.0000 3 8 1.9541 1.0504 0.0000 4 6 2.1013 -1.3051 -0.0064 5 1 1.7367 -2.0005 -0.7624 6 6 3.6295 -1.1340 -0.0124 7 6 3.6867 -2.3140 0.9721 8 1 4.4215 -2.1846 1.7667 9 7 3.7814 -3.6209 0.3169 10 16 4.6701 -4.8331 1.0119 11 8 4.5370 -5.9653 0.1635 12 8 5.9256 -4.2634 1.3561 13 6 3.8813 -5.2534 2.5303 14 6 4.1888 -4.6628 3.6861 15 16 3.1992 -5.3368 4.9745 16 6 2.4063 -6.4209 3.8389 17 6 1.3342 -7.4187 4.1944 18 8 0.1442 -7.1205 3.4616 19 14 0.9790 -7.3241 6.0208 20 6 2.8997 -6.2257 2.6151 21 6 2.2559 -1.9339 1.3884 22 1 -0.4850 0.8400 0.0004 23 1 -0.4850 -0.8400 0.0004 24 1 4.0890 -1.3479 -0.9774 25 1 3.9648 -0.1896 0.4161 26 1 3.3236 -3.7761 -0.5240 27 1 4.9305 -3.8879 3.8113 28 1 1.6743 -8.4229 3.9419 29 1 -0.2156 -6.2402 3.6371 30 1 0.5448 -5.9511 6.3834 31 1 -0.0772 -8.3028 6.3840 32 1 2.5588 -6.7835 1.7555 33 1 2.2158 -1.2088 2.2012 34 1 1.6065 -2.7935 1.5543 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_40_12220720_15065232.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 5 2021 23:16:55 Heat of formation + Delta-G solvation = -86.928503 kcal Electronic energy + Delta-G solvation = -22751.859585 eV Core-core repulsion = 19098.723328 eV Total energy + Delta-G solvation = -3653.136257 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 319.043 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.36231 -39.49261 -39.01269 -38.35192 -37.62692 -37.03012 -34.65561 -33.69845 -31.81062 -27.24056 -27.07612 -26.70029 -24.89068 -22.39663 -21.47667 -20.72654 -20.10896 -19.15248 -18.83460 -18.12990 -17.88539 -17.71911 -17.63728 -17.01033 -16.38984 -16.23606 -15.76499 -15.55063 -15.52290 -14.97279 -14.63944 -14.24790 -14.15306 -13.93712 -13.82484 -13.68509 -13.37241 -13.33329 -13.23037 -12.92094 -12.49973 -12.48464 -12.32002 -11.79534 -11.64592 -11.53777 -10.91029 -10.81234 -10.66433 -10.51764 -10.17113 -9.77713 -5.07805 -0.79523 -0.43785 0.37707 0.62955 1.01119 1.19727 1.50225 1.60346 1.85872 2.00771 2.64780 2.68637 3.21197 3.33936 3.39705 3.47664 3.62707 3.70103 3.90250 3.95444 4.08988 4.27962 4.34751 4.50269 4.59833 4.68361 4.77901 4.87780 4.94188 4.96143 5.05097 5.08792 5.37833 5.87933 6.01066 6.40852 6.47209 7.34778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.840 5.840 2 C 0.520 3.480 3 O -0.596 6.596 4 C -0.137 4.137 5 H 0.140 0.860 6 C -0.128 4.128 7 C 0.123 3.877 8 H 0.118 0.882 9 N -1.085 6.085 10 S 2.728 3.272 11 O -0.985 6.985 12 O -0.981 6.981 13 C -0.689 4.689 14 C -0.086 4.086 15 S 0.190 5.810 16 C -0.232 4.232 17 C -0.039 4.039 18 O -0.538 6.538 19 Si 0.716 3.284 20 C -0.053 4.053 21 C -0.127 4.127 22 H 0.403 0.597 23 H 0.418 0.582 24 H 0.084 0.916 25 H 0.094 0.906 26 H 0.430 0.570 27 H 0.204 0.796 28 H 0.134 0.866 29 H 0.389 0.611 30 H -0.254 1.254 31 H -0.275 1.275 32 H 0.152 0.848 33 H 0.099 0.901 34 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.543 -0.624 3.976 6.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.403 5.403 2 C 0.306 3.694 3 O -0.477 6.477 4 C -0.158 4.158 5 H 0.158 0.842 6 C -0.168 4.168 7 C 0.015 3.985 8 H 0.136 0.864 9 N -0.845 5.845 10 S 2.817 3.183 11 O -0.975 6.975 12 O -0.971 6.971 13 C -0.791 4.791 14 C -0.226 4.226 15 S 0.454 5.546 16 C -0.350 4.350 17 C -0.151 4.151 18 O -0.346 6.346 19 Si 0.617 3.383 20 C -0.082 4.082 21 C -0.167 4.167 22 H 0.234 0.766 23 H 0.249 0.751 24 H 0.103 0.897 25 H 0.113 0.887 26 H 0.267 0.733 27 H 0.221 0.779 28 H 0.152 0.848 29 H 0.239 0.761 30 H -0.179 1.179 31 H -0.201 1.201 32 H 0.169 0.831 33 H 0.118 0.882 34 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -3.807 -0.620 5.764 6.936 hybrid contribution -1.731 0.432 -2.177 2.814 sum -5.538 -0.189 3.587 6.601 Atomic orbital electron populations 1.43852 1.06614 1.13666 1.76155 1.20958 0.83287 0.91303 0.73852 1.90749 1.69443 1.35515 1.51975 1.22906 0.96395 0.94540 1.01925 0.84189 1.23228 0.93945 0.98532 1.01109 1.21714 0.98731 0.81805 0.96242 0.86380 1.55060 1.70601 1.23473 1.35412 1.00746 0.72895 0.71920 0.72766 1.93575 1.86838 1.50885 1.66233 1.93583 1.40019 1.78567 1.84911 1.29739 1.16953 1.12065 1.20319 1.26251 1.00460 1.01044 0.94809 1.84359 1.30005 1.30045 1.10173 1.25081 1.06654 1.05992 0.97243 1.24553 0.82948 0.99223 1.08334 1.86622 1.40709 1.40008 1.67264 0.94421 0.89201 0.80401 0.74263 1.19617 0.93785 0.96141 0.98664 1.23395 0.96916 1.01540 0.94834 0.76600 0.75119 0.89708 0.88722 0.73263 0.77938 0.84833 0.76122 1.17943 1.20076 0.83056 0.88216 0.87876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 5.97 8.87 -173.53 -1.54 4.43 16 2 C 0.52 -0.17 7.63 87.66 0.67 0.50 16 3 O -0.60 -6.29 16.74 -3.04 -0.05 -6.34 16 4 C -0.14 0.91 3.97 -11.01 -0.04 0.86 16 5 H 0.14 -1.63 8.12 -2.39 -0.02 -1.65 16 6 C -0.13 0.45 7.19 31.12 0.22 0.68 16 7 C 0.12 -0.82 4.50 45.52 0.21 -0.61 16 8 H 0.12 -0.90 7.77 -2.39 -0.02 -0.92 16 9 N -1.08 6.59 5.73 -167.20 -0.96 5.63 16 10 S 2.73 1.43 5.77 -56.49 -0.33 1.11 16 11 O -0.98 -7.34 17.63 -128.00 -2.26 -9.60 16 12 O -0.98 -6.25 17.16 -128.00 -2.20 -8.45 16 13 C -0.69 1.49 5.86 21.22 0.12 1.62 16 14 C -0.09 0.43 10.70 66.72 0.71 1.14 16 15 S 0.19 -1.12 20.58 -56.49 -1.16 -2.28 16 16 C -0.23 0.79 5.72 24.59 0.14 0.93 16 17 C -0.04 0.15 2.96 71.24 0.21 0.36 16 18 O -0.54 1.01 12.86 -148.98 -1.92 -0.90 16 19 Si 0.72 -3.36 30.97 68.60 2.12 -1.23 16 20 C -0.05 0.08 9.56 21.22 0.20 0.28 16 21 C -0.13 1.19 7.43 31.12 0.23 1.42 16 22 H 0.40 -2.80 8.93 -92.71 -0.83 -3.63 16 23 H 0.42 -5.68 8.83 -92.71 -0.82 -6.50 16 24 H 0.08 -0.31 8.14 -2.39 -0.02 -0.33 16 25 H 0.09 0.03 7.43 -2.39 -0.02 0.01 16 26 H 0.43 -4.14 8.80 -96.75 -0.85 -4.99 16 27 H 0.20 -1.83 8.00 -2.91 -0.02 -1.86 16 28 H 0.13 -0.65 7.96 -2.39 -0.02 -0.66 16 29 H 0.39 -3.26 8.70 -74.06 -0.64 -3.91 16 30 H -0.25 0.59 7.11 99.48 0.71 1.30 16 31 H -0.28 -0.64 7.11 99.48 0.71 0.07 16 32 H 0.15 -0.12 7.96 -2.91 -0.02 -0.14 16 33 H 0.10 -0.87 8.09 -2.39 -0.02 -0.89 16 34 H 0.10 -1.29 8.14 -2.39 -0.02 -1.31 16 Total: 0.00 -28.37 322.92 -7.51 -35.88 By element: Atomic # 1 Polarization: -23.51 SS G_CDS: -1.91 Total: -25.41 kcal Atomic # 6 Polarization: 4.49 SS G_CDS: 2.68 Total: 7.17 kcal Atomic # 7 Polarization: 12.56 SS G_CDS: -2.50 Total: 10.06 kcal Atomic # 8 Polarization: -18.87 SS G_CDS: -6.42 Total: -25.29 kcal Atomic # 14 Polarization: -3.36 SS G_CDS: 2.12 Total: -1.23 kcal Atomic # 16 Polarization: 0.32 SS G_CDS: -1.49 Total: -1.17 kcal Total: -28.37 -7.51 -35.88 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_12220720_15065232.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.048 kcal (2) G-P(sol) polarization free energy of solvation -28.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds