Wall clock time and date at job start Fri Mar 5 2021 23:16:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33388 * 125.20211 * 2 1 4 4 C 1.50703 * 122.53895 * 0.02562 * 3 2 1 5 5 O 1.42894 * 109.47184 * 60.76952 * 4 3 2 6 6 Si 1.86297 * 109.47229 * 300.76357 * 4 3 2 7 7 C 1.38426 * 114.92231 * 179.86117 * 3 2 1 8 8 S 1.76195 * 122.54324 * 180.20224 * 7 3 2 9 9 O 1.42102 * 106.39937 * 33.39760 * 8 7 3 10 10 O 1.42097 * 106.40592 * 166.31805 * 8 7 3 11 11 N 1.65601 * 107.22034 * 279.85960 * 8 7 3 12 12 C 1.46503 * 120.00129 * 64.99769 * 11 8 7 13 13 H 1.09002 * 112.84580 * 346.19967 * 12 11 8 14 14 C 1.53777 * 113.61489 * 117.50217 * 12 11 8 15 15 C 1.53782 * 87.07698 * 89.11737 * 14 12 11 16 16 H 1.08993 * 113.69373 * 270.86833 * 15 14 12 17 17 C 1.50704 * 113.61330 * 139.98290 * 15 14 12 18 18 N 1.34777 * 120.00079 * 82.49690 * 17 15 14 19 19 O 1.21282 * 120.00103 * 262.50436 * 17 15 14 20 20 C 1.53775 * 113.61386 * 215.00462 * 12 11 8 21 21 C 1.33394 * 114.91958 * 0.43511 * 7 3 2 22 22 C 1.50699 * 125.20598 * 179.74911 * 21 7 3 23 23 S 1.75880 * 125.20361 * 180.31288 * 2 1 3 24 24 H 1.08999 * 109.47390 * 185.02479 * 1 2 3 25 25 H 1.09001 * 109.47512 * 65.02124 * 1 2 3 26 26 H 1.08999 * 109.46970 * 305.02574 * 1 2 3 27 27 H 1.09005 * 109.47118 * 180.76378 * 4 3 2 28 28 H 0.96703 * 114.00215 * 180.02562 * 5 4 3 29 29 H 1.48500 * 110.00170 * 310.68170 * 6 4 3 30 30 H 1.48504 * 109.99865 * 72.00007 * 6 4 3 31 31 H 0.96997 * 119.99786 * 245.00070 * 11 8 7 32 32 H 1.08994 * 113.61491 * 203.66476 * 14 12 11 33 33 H 1.08994 * 113.61663 * 334.56931 * 14 12 11 34 34 H 0.96990 * 120.00105 * 0.02562 * 18 17 15 35 35 H 0.97003 * 119.99702 * 180.02562 * 18 17 15 36 36 H 1.08999 * 113.61674 * 25.42679 * 20 12 11 37 37 H 1.08999 * 113.61824 * 156.25439 * 20 12 11 38 38 H 1.08997 * 109.47128 * 180.02562 * 22 21 7 39 39 H 1.08997 * 109.46779 * 299.99976 * 22 21 7 40 40 H 1.08998 * 109.46855 * 59.99736 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0899 0.0000 4 6 1.7050 2.4847 0.0006 5 8 0.9162 2.6760 1.1766 6 14 0.6378 2.7195 -1.5082 7 6 3.6379 0.8429 0.0030 8 16 4.8356 2.1352 0.0089 9 8 4.2716 3.2015 0.7600 10 8 6.0790 1.5287 0.3333 11 7 4.9742 2.6822 -1.5481 12 6 3.8365 3.3369 -2.1986 13 1 2.9004 3.1933 -1.6589 14 6 4.1074 4.7997 -2.5875 15 6 4.6340 4.2631 -3.9290 16 1 5.6984 4.0291 -3.9197 17 6 4.2294 5.1006 -5.1148 18 7 4.9328 6.2062 -5.4303 19 8 3.2709 4.7799 -5.7851 20 6 3.7319 3.0383 -3.7034 21 6 3.9751 -0.4477 -0.0037 22 6 5.3860 -0.9770 -0.0076 23 16 2.5209 -1.4371 -0.0078 24 1 -0.3634 -1.0237 0.0900 25 1 -0.3634 0.4340 -0.9315 26 1 -0.3633 0.5898 0.8415 27 1 2.5184 3.2102 -0.0132 28 1 0.5162 3.5539 1.2434 29 1 1.3694 2.2757 -2.7220 30 1 -0.6224 1.9473 -1.3641 31 1 5.8088 2.5690 -2.0293 32 1 3.2032 5.4010 -2.6824 33 1 4.8735 5.2789 -1.9780 34 1 5.6995 6.4626 -4.8945 35 1 4.6721 6.7455 -6.1934 36 1 4.1949 2.0955 -3.9948 37 1 2.7248 3.1567 -4.1032 38 1 5.3652 -2.0668 -0.0134 39 1 5.9058 -0.6191 -0.8963 40 1 5.9075 -0.6280 0.8837 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV m_40_12220720_15065288.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 5 2021 23:16:59 Heat of formation + Delta-G solvation = -62.237856 kcal Electronic energy + Delta-G solvation = -28096.304333 eV Core-core repulsion = 24133.163504 eV Total energy + Delta-G solvation = -3963.140828 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 347.074 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -41.53981 -40.24182 -39.10350 -38.44097 -37.14553 -36.93557 -34.69130 -34.33621 -33.90012 -30.98065 -28.33961 -27.24876 -26.93369 -25.97188 -23.15516 -22.57551 -21.12947 -20.53006 -19.94854 -19.37086 -18.64700 -18.19600 -18.16610 -17.76814 -17.39532 -17.06878 -16.34680 -16.27162 -15.83195 -15.72440 -15.61051 -15.11272 -14.84653 -14.68005 -14.47373 -14.21831 -14.11601 -13.89748 -13.82583 -13.63610 -13.56489 -13.27094 -13.16661 -12.95771 -12.87782 -12.58170 -12.55003 -12.17301 -12.00234 -11.70294 -11.61485 -11.43383 -10.92956 -10.72377 -10.67923 -10.38612 -10.00350 -9.44587 -5.09936 -0.80994 -0.43996 0.35501 0.64964 0.79380 1.21467 1.50567 1.56896 1.86363 1.90004 2.47907 2.61675 3.11233 3.21420 3.24107 3.28206 3.49150 3.57164 3.63350 3.71501 3.88335 4.00706 4.08110 4.08692 4.19062 4.33102 4.45286 4.46509 4.50924 4.54645 4.61620 4.69148 4.71698 4.82543 4.89093 4.98690 5.04522 5.14170 5.19560 5.70989 5.74914 6.28456 6.63789 7.23221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.169 4.169 3 C -0.039 4.039 4 C -0.080 4.080 5 O -0.533 6.533 6 Si 0.643 3.357 7 C -0.684 4.684 8 S 2.706 3.294 9 O -0.938 6.938 10 O -0.949 6.949 11 N -1.096 6.096 12 C 0.113 3.887 13 H 0.100 0.900 14 C -0.133 4.133 15 C -0.141 4.141 16 H 0.117 0.883 17 C 0.527 3.473 18 N -0.854 5.854 19 O -0.540 6.540 20 C -0.125 4.125 21 C -0.050 4.050 22 C -0.110 4.110 23 S 0.162 5.838 24 H 0.072 0.928 25 H 0.085 0.915 26 H 0.096 0.904 27 H 0.099 0.901 28 H 0.384 0.616 29 H -0.235 1.235 30 H -0.228 1.228 31 H 0.421 0.579 32 H 0.105 0.895 33 H 0.092 0.908 34 H 0.403 0.597 35 H 0.402 0.598 36 H 0.083 0.917 37 H 0.113 0.887 38 H 0.079 0.921 39 H 0.094 0.906 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.298 2.682 -2.318 3.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.287 4.287 3 C -0.049 4.049 4 C -0.192 4.192 5 O -0.339 6.339 6 Si 0.542 3.458 7 C -0.783 4.783 8 S 2.793 3.207 9 O -0.928 6.928 10 O -0.939 6.939 11 N -0.855 5.855 12 C 0.006 3.994 13 H 0.118 0.882 14 C -0.172 4.172 15 C -0.163 4.163 16 H 0.135 0.865 17 C 0.311 3.689 18 N -0.417 5.417 19 O -0.416 6.416 20 C -0.165 4.165 21 C -0.171 4.171 22 C -0.168 4.168 23 S 0.429 5.571 24 H 0.090 0.910 25 H 0.103 0.897 26 H 0.114 0.886 27 H 0.117 0.883 28 H 0.232 0.768 29 H -0.159 1.159 30 H -0.153 1.153 31 H 0.257 0.743 32 H 0.124 0.876 33 H 0.111 0.889 34 H 0.231 0.769 35 H 0.233 0.767 36 H 0.102 0.898 37 H 0.131 0.869 38 H 0.098 0.902 39 H 0.112 0.888 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 0.412 0.025 -2.378 2.414 hybrid contribution 0.770 0.842 -0.181 1.155 sum 1.182 0.866 -2.559 2.949 Atomic orbital electron populations 1.20837 0.87130 1.03594 1.04395 1.24447 1.00486 0.95079 1.08722 1.17481 0.89951 0.94660 1.02790 1.25161 1.00817 0.94450 0.98741 1.86446 1.68053 1.38341 1.41097 0.96495 0.81842 0.91055 0.76361 1.29407 1.11578 1.13529 1.23787 1.01723 0.73113 0.73527 0.72350 1.93574 1.78843 1.52650 1.67697 1.93607 1.40958 1.77649 1.81714 1.55417 1.21456 1.73557 1.35071 1.21967 0.88415 0.93927 0.95125 0.88237 1.23397 1.03274 0.96429 0.94134 1.22807 1.02054 0.97678 0.93718 0.86493 1.20418 0.82335 0.80963 0.85169 1.43907 1.34316 1.28567 1.34929 1.90769 1.27852 1.70601 1.52365 1.23358 1.02063 0.97478 0.93579 1.24596 1.00847 0.94877 0.96774 1.20918 0.88005 1.01809 1.06069 1.84409 0.95133 1.08445 1.69153 0.90954 0.89740 0.88572 0.88335 0.76805 1.15930 1.15278 0.74318 0.87645 0.88934 0.76897 0.76682 0.89798 0.86920 0.90250 0.88767 0.87180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.14 8.69 36.00 0.31 0.17 16 2 C -0.17 -0.47 6.08 -36.01 -0.22 -0.68 16 3 C -0.04 -0.12 4.40 -106.25 -0.47 -0.59 16 4 C -0.08 -0.12 1.91 36.01 0.07 -0.05 16 5 O -0.53 -0.78 11.69 -35.23 -0.41 -1.19 16 6 Si 0.64 -0.40 27.61 -169.99 -4.69 -5.09 16 7 C -0.68 -1.77 5.85 -41.21 -0.24 -2.01 16 8 S 2.71 4.88 5.42 -107.50 -0.58 4.30 16 9 O -0.94 -3.85 14.88 -57.17 -0.85 -4.70 16 10 O -0.95 -2.98 14.74 -57.17 -0.84 -3.82 16 11 N -1.10 1.77 5.73 -4.20 -0.02 1.75 16 12 C 0.11 -0.16 4.06 -67.12 -0.27 -0.44 16 13 H 0.10 -0.09 1.20 -51.93 -0.06 -0.15 16 14 C -0.13 0.40 7.43 -25.92 -0.19 0.21 16 15 C -0.14 0.37 3.97 -90.96 -0.36 0.00 16 16 H 0.12 -0.57 8.11 -51.93 -0.42 -0.99 16 17 C 0.53 -0.12 7.63 -10.98 -0.08 -0.21 16 18 N -0.85 2.90 8.87 31.22 0.28 3.17 16 19 O -0.54 -2.37 16.74 5.56 0.09 -2.27 16 20 C -0.13 0.14 6.61 -25.92 -0.17 -0.03 16 21 C -0.05 -0.09 6.50 -36.00 -0.23 -0.32 16 22 C -0.11 0.01 8.64 36.00 0.31 0.32 16 23 S 0.16 0.24 23.31 -107.50 -2.51 -2.26 16 24 H 0.07 0.01 8.14 -51.93 -0.42 -0.41 16 25 H 0.08 0.10 4.66 -51.93 -0.24 -0.14 16 26 H 0.10 0.15 7.23 -51.93 -0.38 -0.22 16 27 H 0.10 0.11 3.23 -51.93 -0.17 -0.06 16 28 H 0.38 -1.29 8.74 45.56 0.40 -0.89 16 29 H -0.24 -0.13 5.45 56.52 0.31 0.18 16 30 H -0.23 -0.18 5.22 56.52 0.30 0.12 16 31 H 0.42 -1.74 8.79 -34.47 -0.30 -2.05 16 32 H 0.11 -0.39 8.09 -51.93 -0.42 -0.81 16 33 H 0.09 -0.37 8.14 -51.93 -0.42 -0.80 16 34 H 0.40 -2.50 8.83 -40.82 -0.36 -2.86 16 35 H 0.40 -1.45 8.93 -40.82 -0.36 -1.81 16 36 H 0.08 -0.14 8.14 -51.93 -0.42 -0.56 16 37 H 0.11 0.04 6.65 -51.93 -0.35 -0.30 16 38 H 0.08 -0.14 8.14 -51.93 -0.42 -0.57 16 39 H 0.09 -0.13 7.88 -51.93 -0.41 -0.54 16 40 H 0.11 0.06 7.02 -51.93 -0.36 -0.30 16 LS Contribution 333.35 15.07 5.02 5.02 Total: 0.00 -11.29 333.35 -10.59 -21.89 By element: Atomic # 1 Polarization: -8.64 SS G_CDS: -4.53 Total: -13.16 kcal Atomic # 6 Polarization: -2.08 SS G_CDS: -1.55 Total: -3.63 kcal Atomic # 7 Polarization: 4.67 SS G_CDS: 0.25 Total: 4.92 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: -2.01 Total: -11.99 kcal Atomic # 14 Polarization: -0.40 SS G_CDS: -4.69 Total: -5.09 kcal Atomic # 16 Polarization: 5.13 SS G_CDS: -3.09 Total: 2.04 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -11.29 -10.59 -21.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_12220720_15065288.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.350 kcal (2) G-P(sol) polarization free energy of solvation -11.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds