Wall clock time and date at job start Fri Mar 5 2021 23:16:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33388 * 125.20211 * 2 1 4 4 C 1.50703 * 122.53895 * 0.02562 * 3 2 1 5 5 O 1.42894 * 109.47184 * 60.76952 * 4 3 2 6 6 Si 1.86297 * 109.47229 * 300.76357 * 4 3 2 7 7 C 1.38426 * 114.92231 * 179.86117 * 3 2 1 8 8 S 1.76195 * 122.54324 * 180.20224 * 7 3 2 9 9 O 1.42102 * 106.39937 * 33.39760 * 8 7 3 10 10 O 1.42097 * 106.40592 * 166.31805 * 8 7 3 11 11 N 1.65601 * 107.22034 * 279.85960 * 8 7 3 12 12 C 1.46503 * 120.00129 * 64.99769 * 11 8 7 13 13 H 1.09002 * 112.84580 * 346.19967 * 12 11 8 14 14 C 1.53777 * 113.61489 * 117.50217 * 12 11 8 15 15 C 1.53782 * 87.07698 * 89.11737 * 14 12 11 16 16 H 1.08993 * 113.69373 * 270.86833 * 15 14 12 17 17 C 1.50704 * 113.61330 * 139.98290 * 15 14 12 18 18 N 1.34777 * 120.00079 * 82.49690 * 17 15 14 19 19 O 1.21282 * 120.00103 * 262.50436 * 17 15 14 20 20 C 1.53775 * 113.61386 * 215.00462 * 12 11 8 21 21 C 1.33394 * 114.91958 * 0.43511 * 7 3 2 22 22 C 1.50699 * 125.20598 * 179.74911 * 21 7 3 23 23 S 1.75880 * 125.20361 * 180.31288 * 2 1 3 24 24 H 1.08999 * 109.47390 * 185.02479 * 1 2 3 25 25 H 1.09001 * 109.47512 * 65.02124 * 1 2 3 26 26 H 1.08999 * 109.46970 * 305.02574 * 1 2 3 27 27 H 1.09005 * 109.47118 * 180.76378 * 4 3 2 28 28 H 0.96703 * 114.00215 * 180.02562 * 5 4 3 29 29 H 1.48500 * 110.00170 * 310.68170 * 6 4 3 30 30 H 1.48504 * 109.99865 * 72.00007 * 6 4 3 31 31 H 0.96997 * 119.99786 * 245.00070 * 11 8 7 32 32 H 1.08994 * 113.61491 * 203.66476 * 14 12 11 33 33 H 1.08994 * 113.61663 * 334.56931 * 14 12 11 34 34 H 0.96990 * 120.00105 * 0.02562 * 18 17 15 35 35 H 0.97003 * 119.99702 * 180.02562 * 18 17 15 36 36 H 1.08999 * 113.61674 * 25.42679 * 20 12 11 37 37 H 1.08999 * 113.61824 * 156.25439 * 20 12 11 38 38 H 1.08997 * 109.47128 * 180.02562 * 22 21 7 39 39 H 1.08997 * 109.46779 * 299.99976 * 22 21 7 40 40 H 1.08998 * 109.46855 * 59.99736 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0899 0.0000 4 6 1.7050 2.4847 0.0006 5 8 0.9162 2.6760 1.1766 6 14 0.6378 2.7195 -1.5082 7 6 3.6379 0.8429 0.0030 8 16 4.8356 2.1352 0.0089 9 8 4.2716 3.2015 0.7600 10 8 6.0790 1.5287 0.3333 11 7 4.9742 2.6822 -1.5481 12 6 3.8365 3.3369 -2.1986 13 1 2.9004 3.1933 -1.6589 14 6 4.1074 4.7997 -2.5875 15 6 4.6340 4.2631 -3.9290 16 1 5.6984 4.0291 -3.9197 17 6 4.2294 5.1006 -5.1148 18 7 4.9328 6.2062 -5.4303 19 8 3.2709 4.7799 -5.7851 20 6 3.7319 3.0383 -3.7034 21 6 3.9751 -0.4477 -0.0037 22 6 5.3860 -0.9770 -0.0076 23 16 2.5209 -1.4371 -0.0078 24 1 -0.3634 -1.0237 0.0900 25 1 -0.3634 0.4340 -0.9315 26 1 -0.3633 0.5898 0.8415 27 1 2.5184 3.2102 -0.0132 28 1 0.5162 3.5539 1.2434 29 1 1.3694 2.2757 -2.7220 30 1 -0.6224 1.9473 -1.3641 31 1 5.8088 2.5690 -2.0293 32 1 3.2032 5.4010 -2.6824 33 1 4.8735 5.2789 -1.9780 34 1 5.6995 6.4626 -4.8945 35 1 4.6721 6.7455 -6.1934 36 1 4.1949 2.0955 -3.9948 37 1 2.7248 3.1567 -4.1032 38 1 5.3652 -2.0668 -0.0134 39 1 5.9058 -0.6191 -0.8963 40 1 5.9075 -0.6280 0.8837 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_40_12220720_15065288.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 5 2021 23:16:58 Heat of formation + Delta-G solvation = -70.503661 kcal Electronic energy + Delta-G solvation = -28096.662765 eV Core-core repulsion = 24133.163504 eV Total energy + Delta-G solvation = -3963.499261 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 347.074 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.43885 -40.32552 -39.08511 -38.58742 -37.21805 -37.12790 -34.61691 -34.41194 -33.80758 -31.04250 -28.36379 -27.14463 -26.75115 -26.06682 -23.22298 -22.49024 -21.15060 -20.48002 -19.99331 -19.44155 -18.67520 -18.21644 -18.11176 -17.68349 -17.43656 -17.06729 -16.41352 -16.24184 -15.85467 -15.71253 -15.66094 -15.16654 -14.80196 -14.72538 -14.52508 -14.22546 -14.07502 -13.92619 -13.86816 -13.65141 -13.56213 -13.39798 -13.26886 -13.04687 -12.95155 -12.64189 -12.57014 -12.16360 -11.89901 -11.71638 -11.55580 -11.49237 -10.88884 -10.62707 -10.58916 -10.43484 -10.11094 -9.54682 -5.07177 -0.90162 -0.56129 0.25887 0.53714 0.68623 1.19354 1.52226 1.63621 1.85547 1.86599 2.51073 2.67339 3.07211 3.24788 3.31882 3.40492 3.55456 3.65391 3.69543 3.80255 3.92239 3.97035 4.03115 4.18794 4.32561 4.36518 4.41867 4.50832 4.54263 4.60950 4.74822 4.81032 4.81971 4.89142 4.94682 5.00439 5.04403 5.10296 5.30614 5.92834 5.95168 6.52275 6.81648 7.39473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.192 4.192 3 C -0.055 4.055 4 C -0.095 4.095 5 O -0.552 6.552 6 Si 0.712 3.288 7 C -0.701 4.701 8 S 2.719 3.281 9 O -0.963 6.963 10 O -0.965 6.965 11 N -1.081 6.081 12 C 0.107 3.893 13 H 0.093 0.907 14 C -0.128 4.128 15 C -0.133 4.133 16 H 0.146 0.854 17 C 0.522 3.478 18 N -0.838 5.838 19 O -0.594 6.594 20 C -0.132 4.132 21 C -0.053 4.053 22 C -0.115 4.115 23 S 0.173 5.827 24 H 0.082 0.918 25 H 0.085 0.915 26 H 0.092 0.908 27 H 0.101 0.899 28 H 0.402 0.598 29 H -0.254 1.254 30 H -0.248 1.248 31 H 0.434 0.566 32 H 0.111 0.889 33 H 0.109 0.891 34 H 0.418 0.582 35 H 0.405 0.595 36 H 0.087 0.913 37 H 0.094 0.906 38 H 0.096 0.904 39 H 0.107 0.893 40 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.281 3.198 -2.613 4.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.309 4.309 3 C -0.065 4.065 4 C -0.205 4.205 5 O -0.361 6.361 6 Si 0.612 3.388 7 C -0.799 4.799 8 S 2.806 3.194 9 O -0.953 6.953 10 O -0.955 6.955 11 N -0.843 5.843 12 C -0.001 4.001 13 H 0.110 0.890 14 C -0.167 4.167 15 C -0.154 4.154 16 H 0.164 0.836 17 C 0.308 3.692 18 N -0.401 5.401 19 O -0.474 6.474 20 C -0.172 4.172 21 C -0.174 4.174 22 C -0.173 4.173 23 S 0.439 5.561 24 H 0.101 0.899 25 H 0.103 0.897 26 H 0.110 0.890 27 H 0.118 0.882 28 H 0.253 0.747 29 H -0.179 1.179 30 H -0.174 1.174 31 H 0.273 0.727 32 H 0.129 0.871 33 H 0.128 0.872 34 H 0.250 0.750 35 H 0.235 0.765 36 H 0.106 0.894 37 H 0.113 0.887 38 H 0.115 0.885 39 H 0.126 0.874 40 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 1.449 0.585 -2.643 3.071 hybrid contribution 0.487 0.684 -0.101 0.845 sum 1.936 1.268 -2.744 3.590 Atomic orbital electron populations 1.20852 0.86623 1.04221 1.04219 1.24696 1.01191 0.95640 1.09423 1.17804 0.90364 0.95585 1.02746 1.25440 1.01526 0.93818 0.99731 1.86394 1.68251 1.40064 1.41379 0.95781 0.79361 0.89786 0.73843 1.29549 1.11695 1.14106 1.24593 1.01165 0.72404 0.72987 0.72846 1.93541 1.79215 1.53500 1.69055 1.93580 1.41562 1.77872 1.82483 1.55073 1.22104 1.73088 1.34054 1.22033 0.88174 0.95165 0.94684 0.88964 1.23448 1.04131 0.95440 0.93721 1.22867 1.03246 0.96426 0.92819 0.83630 1.20815 0.81693 0.81472 0.85247 1.43821 1.34098 1.27416 1.34754 1.90748 1.30282 1.72085 1.54318 1.23340 1.01643 0.98487 0.93706 1.24904 1.01701 0.94828 0.95981 1.21054 0.86919 1.03000 1.06325 1.84264 0.94863 1.07962 1.68982 0.89910 0.89727 0.88993 0.88200 0.74735 1.17897 1.17437 0.72683 0.87057 0.87242 0.75019 0.76455 0.89447 0.88732 0.88508 0.87425 0.87863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.38 8.69 71.23 0.62 0.24 16 2 C -0.19 -1.23 6.08 24.59 0.15 -1.08 16 3 C -0.05 -0.38 4.40 -20.92 -0.09 -0.48 16 4 C -0.09 -0.35 1.91 71.24 0.14 -0.21 16 5 O -0.55 -2.07 11.69 -148.98 -1.74 -3.81 16 6 Si 0.71 -0.36 27.61 68.60 1.89 1.53 16 7 C -0.70 -4.09 5.85 21.22 0.12 -3.97 16 8 S 2.72 10.45 5.42 -56.49 -0.31 10.14 16 9 O -0.96 -8.38 14.88 -128.00 -1.90 -10.29 16 10 O -0.96 -6.13 14.74 -128.00 -1.89 -8.02 16 11 N -1.08 4.06 5.73 -167.20 -0.96 3.11 16 12 C 0.11 -0.34 4.06 45.51 0.18 -0.15 16 13 H 0.09 -0.14 1.20 -2.39 0.00 -0.14 16 14 C -0.13 0.91 7.43 31.12 0.23 1.14 16 15 C -0.13 0.82 3.97 -11.01 -0.04 0.77 16 16 H 0.15 -1.77 8.11 -2.39 -0.02 -1.79 16 17 C 0.52 -0.40 7.63 87.66 0.67 0.26 16 18 N -0.84 6.51 8.87 -173.53 -1.54 4.97 16 19 O -0.59 -5.79 16.74 -3.03 -0.05 -5.84 16 20 C -0.13 0.27 6.61 31.12 0.21 0.48 16 21 C -0.05 -0.21 6.50 24.59 0.16 -0.05 16 22 C -0.11 0.04 8.64 71.24 0.62 0.66 16 23 S 0.17 0.61 23.31 -56.49 -1.32 -0.71 16 24 H 0.08 0.08 8.14 -2.39 -0.02 0.06 16 25 H 0.08 0.29 4.66 -2.39 -0.01 0.28 16 26 H 0.09 0.40 7.23 -2.39 -0.02 0.38 16 27 H 0.10 0.29 3.23 -2.38 -0.01 0.28 16 28 H 0.40 -2.47 8.74 -74.06 -0.65 -3.12 16 29 H -0.25 -0.57 5.45 99.48 0.54 -0.03 16 30 H -0.25 -0.61 5.22 99.48 0.52 -0.09 16 31 H 0.43 -4.11 8.79 -96.75 -0.85 -4.96 16 32 H 0.11 -0.90 8.09 -2.39 -0.02 -0.92 16 33 H 0.11 -1.11 8.14 -2.39 -0.02 -1.13 16 34 H 0.42 -5.95 8.83 -92.72 -0.82 -6.77 16 35 H 0.40 -3.15 8.93 -92.71 -0.83 -3.98 16 36 H 0.09 -0.28 8.14 -2.39 -0.02 -0.30 16 37 H 0.09 0.20 6.65 -2.39 -0.02 0.19 16 38 H 0.10 -0.41 8.14 -2.39 -0.02 -0.43 16 39 H 0.11 -0.35 7.88 -2.39 -0.02 -0.37 16 40 H 0.10 0.15 7.02 -2.39 -0.02 0.13 16 Total: 0.00 -26.88 333.35 -7.14 -34.02 By element: Atomic # 1 Polarization: -20.43 SS G_CDS: -2.29 Total: -22.72 kcal Atomic # 6 Polarization: -5.34 SS G_CDS: 2.96 Total: -2.38 kcal Atomic # 7 Polarization: 10.57 SS G_CDS: -2.50 Total: 8.07 kcal Atomic # 8 Polarization: -22.37 SS G_CDS: -5.58 Total: -27.96 kcal Atomic # 14 Polarization: -0.36 SS G_CDS: 1.89 Total: 1.53 kcal Atomic # 16 Polarization: 11.05 SS G_CDS: -1.62 Total: 9.43 kcal Total: -26.88 -7.14 -34.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_12220720_15065288.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.482 kcal (2) G-P(sol) polarization free energy of solvation -26.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds