Wall clock time and date at job start Fri Mar 5 2021 23:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.34781 * 1 3 3 O 1.21286 * 119.99761 * 2 1 4 4 C 1.50690 * 120.00289 * 180.02562 * 2 1 3 5 5 H 1.09000 * 112.85022 * 311.19245 * 4 2 1 6 6 C 1.53786 * 113.61785 * 82.49976 * 4 2 1 7 7 C 1.53780 * 87.08122 * 139.98438 * 6 4 2 8 8 H 1.09008 * 113.68538 * 220.00981 * 7 6 4 9 9 N 1.46498 * 113.61786 * 89.11881 * 7 6 4 10 10 S 1.65602 * 119.99781 * 117.83234 * 9 7 6 11 11 O 1.42100 * 106.40228 * 309.74170 * 10 9 7 12 12 O 1.42102 * 106.39942 * 176.82098 * 10 9 7 13 13 C 1.76192 * 107.21817 * 63.28649 * 10 9 7 14 14 C 1.38210 * 120.00549 * 63.74413 * 13 10 9 15 15 C 1.50698 * 119.99950 * 359.97438 * 14 13 10 16 16 O 1.42904 * 109.47135 * 75.57607 * 15 14 13 17 17 Si 1.86298 * 109.47560 * 195.57986 * 15 14 13 18 18 C 1.38258 * 120.00250 * 179.72297 * 14 13 10 19 19 C 1.38209 * 119.99940 * 0.28340 * 18 14 13 20 20 C 1.38257 * 120.00135 * 359.96957 * 19 18 14 21 21 C 1.38212 * 119.99882 * 359.96052 * 20 19 18 22 22 C 1.53776 * 87.07986 * 334.56487 * 7 6 4 23 23 H 0.96993 * 119.99946 * 180.02562 * 1 2 3 24 24 H 0.97001 * 120.00172 * 359.97438 * 1 2 3 25 25 H 1.09002 * 113.61067 * 25.43167 * 6 4 2 26 26 H 1.09002 * 113.61139 * 254.53548 * 6 4 2 27 27 H 0.96996 * 119.99976 * 297.83841 * 9 7 6 28 28 H 1.09008 * 109.46969 * 315.58185 * 15 14 13 29 29 H 0.96701 * 113.99579 * 65.35345 * 16 15 14 30 30 H 1.48501 * 110.00157 * 179.97438 * 17 15 14 31 31 H 1.48507 * 109.99533 * 301.31847 * 17 15 14 32 32 H 1.07996 * 119.99959 * 180.24996 * 18 14 13 33 33 H 1.07999 * 119.99947 * 179.97438 * 19 18 14 34 34 H 1.08000 * 120.00268 * 179.97438 * 20 19 18 35 35 H 1.08004 * 119.99825 * 180.02562 * 21 20 19 36 36 H 1.09006 * 113.61205 * 139.98308 * 22 7 6 37 37 H 1.08995 * 113.62250 * 270.80158 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3478 0.0000 0.0000 3 8 1.9542 1.0504 0.0000 4 6 2.1013 -1.3050 -0.0006 5 1 1.7401 -2.0027 0.7550 6 6 2.2501 -1.9299 -1.3979 7 6 3.6826 -2.3112 -0.9886 8 1 4.4152 -2.1801 -1.7851 9 7 3.7783 -3.6200 -0.3375 10 16 4.6706 -4.8284 -1.0347 11 8 4.2444 -4.9123 -2.3876 12 8 4.6271 -5.9286 -0.1364 13 6 6.3457 -4.2837 -1.0735 14 6 7.0245 -4.0514 0.1078 15 6 6.3316 -4.2633 1.4292 16 8 6.2364 -5.6636 1.6979 17 14 7.3088 -3.4362 2.7826 18 6 8.3408 -3.6295 0.0774 19 6 8.9761 -3.4345 -1.1345 20 6 8.2955 -3.6619 -2.3163 21 6 6.9801 -4.0850 -2.2858 22 6 3.6296 -1.1339 -0.0006 23 1 -0.4850 -0.8400 0.0004 24 1 -0.4850 0.8400 0.0004 25 1 2.2065 -1.2023 -2.2084 26 1 1.6000 -2.7890 -1.5634 27 1 3.3189 -3.7788 0.5019 28 1 5.3312 -3.8324 1.3881 29 1 7.0904 -6.0977 1.8295 30 1 6.6356 -3.6374 4.0909 31 1 8.6850 -3.9927 2.8281 32 1 8.8724 -3.4518 1.0005 33 1 10.0042 -3.1046 -1.1583 34 1 8.7918 -3.5091 -3.2633 35 1 6.4486 -4.2630 -3.2090 36 1 4.0932 -1.3505 0.9619 37 1 3.9645 -0.1891 -0.4287 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_40_12220720_2726874.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 5 2021 23:17:03 Heat of formation + Delta-G solvation = -82.596774 kcal Electronic energy + Delta-G solvation = -24978.075747 eV Core-core repulsion = 21235.975082 eV Total energy + Delta-G solvation = -3742.100666 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 313.086 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.31965 -40.66610 -38.96161 -38.45626 -37.54393 -36.93463 -34.60692 -33.76811 -32.77440 -32.37579 -27.19475 -26.86983 -26.62677 -24.41676 -22.79004 -22.34584 -20.94135 -20.30646 -19.34708 -18.63721 -18.11119 -18.04980 -17.66061 -17.24363 -16.83123 -16.53490 -16.12409 -15.96211 -15.84170 -15.51197 -15.44005 -15.00528 -14.61772 -14.16796 -13.98780 -13.88890 -13.61979 -13.45472 -13.31162 -13.19171 -13.08122 -12.83097 -12.42976 -12.32367 -11.99505 -11.77923 -11.60177 -11.45123 -10.85281 -10.73204 -10.61230 -10.45776 -10.42555 -10.04908 -4.96441 -0.69096 -0.25681 0.15068 1.16790 1.54074 1.65146 1.88001 1.91439 2.41019 2.66916 2.71659 3.24721 3.40117 3.46170 3.49320 3.53677 3.76582 3.83458 3.94845 3.97210 4.08050 4.19438 4.33090 4.36860 4.39489 4.60341 4.64646 4.81058 4.82846 4.91961 5.01251 5.01805 5.12224 5.18280 5.31880 5.42537 5.77362 5.92409 6.01244 6.47538 6.51173 7.38868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.842 5.842 2 C 0.521 3.479 3 O -0.593 6.593 4 C -0.138 4.138 5 H 0.140 0.860 6 C -0.133 4.133 7 C 0.125 3.875 8 H 0.112 0.888 9 N -1.088 6.088 10 S 2.697 3.303 11 O -0.990 6.990 12 O -0.959 6.959 13 C -0.665 4.665 14 C -0.018 4.018 15 C -0.131 4.131 16 O -0.514 6.514 17 Si 0.779 3.221 18 C -0.148 4.148 19 C -0.055 4.055 20 C -0.137 4.137 21 C -0.038 4.038 22 C -0.122 4.122 23 H 0.417 0.583 24 H 0.403 0.597 25 H 0.096 0.904 26 H 0.093 0.907 27 H 0.429 0.571 28 H 0.127 0.873 29 H 0.379 0.621 30 H -0.293 1.293 31 H -0.269 1.269 32 H 0.153 0.847 33 H 0.163 0.837 34 H 0.157 0.843 35 H 0.145 0.855 36 H 0.100 0.900 37 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.414 3.311 0.597 3.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.405 5.405 2 C 0.307 3.693 3 O -0.473 6.473 4 C -0.159 4.159 5 H 0.158 0.842 6 C -0.173 4.173 7 C 0.017 3.983 8 H 0.129 0.871 9 N -0.850 5.850 10 S 2.789 3.211 11 O -0.980 6.980 12 O -0.949 6.949 13 C -0.753 4.753 14 C -0.020 4.020 15 C -0.239 4.239 16 O -0.321 6.321 17 Si 0.681 3.319 18 C -0.167 4.167 19 C -0.073 4.073 20 C -0.155 4.155 21 C -0.058 4.058 22 C -0.162 4.162 23 H 0.248 0.752 24 H 0.234 0.766 25 H 0.115 0.885 26 H 0.111 0.889 27 H 0.267 0.733 28 H 0.144 0.856 29 H 0.228 0.772 30 H -0.220 1.220 31 H -0.195 1.195 32 H 0.170 0.830 33 H 0.180 0.820 34 H 0.174 0.826 35 H 0.162 0.838 36 H 0.118 0.882 37 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 1.498 3.084 0.791 3.518 hybrid contribution -0.052 -0.902 0.179 0.921 sum 1.446 2.182 0.971 2.792 Atomic orbital electron populations 1.43871 1.06742 1.13630 1.76214 1.20920 0.83234 0.91291 0.73847 1.90740 1.69349 1.35330 1.51897 1.22918 0.97145 0.94552 1.01272 0.84216 1.23376 0.97347 1.01312 0.95227 1.21677 0.98730 0.81789 0.96077 0.87053 1.55202 1.65741 1.26046 1.37981 1.01626 0.73839 0.72892 0.72759 1.93554 1.81130 1.86077 1.37201 1.93691 1.86748 1.49559 1.64932 1.30575 1.25447 1.19870 0.99452 1.19984 0.94939 0.93539 0.93554 1.25787 1.08788 0.88541 1.00764 1.86931 1.34375 1.18529 1.92268 0.93908 0.75419 0.88881 0.73656 1.21554 0.93968 1.00941 1.00197 1.21862 1.01099 0.92699 0.91625 1.21705 0.94148 0.99353 1.00331 1.21250 0.95918 0.92265 0.96318 1.23272 0.93378 0.98208 1.01312 0.75223 0.76594 0.88510 0.88883 0.73328 0.85553 0.77243 1.22045 1.19494 0.83021 0.81992 0.82571 0.83759 0.88160 0.88282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 5.19 8.87 -173.53 -1.54 3.65 16 2 C 0.52 -0.01 7.63 87.65 0.67 0.66 16 3 O -0.59 -5.85 16.74 -3.05 -0.05 -5.90 16 4 C -0.14 0.82 3.97 -11.02 -0.04 0.78 16 5 H 0.14 -1.54 8.10 -2.39 -0.02 -1.56 16 6 C -0.13 0.73 7.43 31.12 0.23 0.96 16 7 C 0.13 -0.63 4.43 45.52 0.20 -0.43 16 8 H 0.11 -0.62 8.05 -2.38 -0.02 -0.64 16 9 N -1.09 4.18 4.42 -167.20 -0.74 3.44 16 10 S 2.70 11.10 4.92 -56.49 -0.28 10.82 16 11 O -0.99 -9.50 16.77 -128.00 -2.15 -11.64 16 12 O -0.96 -10.29 15.01 -119.15 -1.79 -12.08 16 13 C -0.67 -1.19 5.84 22.27 0.13 -1.06 16 14 C -0.02 0.01 5.27 -19.87 -0.10 -0.09 16 15 C -0.13 0.13 1.88 71.24 0.13 0.26 16 16 O -0.51 -2.24 10.58 -127.41 -1.35 -3.59 16 17 Si 0.78 -3.33 30.20 68.60 2.07 -1.26 16 18 C -0.15 0.56 8.66 22.27 0.19 0.75 16 19 C -0.06 0.29 10.05 22.27 0.22 0.51 16 20 C -0.14 0.48 10.05 22.27 0.22 0.71 16 21 C -0.04 -0.02 9.55 22.27 0.21 0.20 16 22 C -0.12 0.66 7.19 31.12 0.22 0.89 16 23 H 0.42 -5.05 8.83 -92.71 -0.82 -5.87 16 24 H 0.40 -2.53 8.93 -92.71 -0.83 -3.36 16 25 H 0.10 -0.45 8.09 -2.39 -0.02 -0.47 16 26 H 0.09 -0.60 8.14 -2.39 -0.02 -0.62 16 27 H 0.43 -3.35 8.51 -96.75 -0.82 -4.17 16 28 H 0.13 -0.50 5.84 -2.38 -0.01 -0.52 16 29 H 0.38 -0.53 8.60 -74.06 -0.64 -1.17 16 30 H -0.29 -0.86 7.11 99.48 0.71 -0.15 16 31 H -0.27 0.55 6.66 99.48 0.66 1.22 16 32 H 0.15 -1.12 4.87 -2.91 -0.01 -1.14 16 33 H 0.16 -1.77 8.06 -2.91 -0.02 -1.79 16 34 H 0.16 -1.28 8.06 -2.91 -0.02 -1.30 16 35 H 0.14 -0.02 7.34 -2.91 -0.02 -0.04 16 36 H 0.10 -0.87 8.14 -2.38 -0.02 -0.89 16 37 H 0.10 -0.21 7.44 -2.39 -0.02 -0.23 16 Total: 0.00 -29.65 320.20 -5.47 -35.12 By element: Atomic # 1 Polarization: -20.74 SS G_CDS: -1.95 Total: -22.69 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: 2.29 Total: 4.13 kcal Atomic # 7 Polarization: 9.37 SS G_CDS: -2.28 Total: 7.09 kcal Atomic # 8 Polarization: -27.88 SS G_CDS: -5.33 Total: -33.21 kcal Atomic # 14 Polarization: -3.33 SS G_CDS: 2.07 Total: -1.26 kcal Atomic # 16 Polarization: 11.10 SS G_CDS: -0.28 Total: 10.82 kcal Total: -29.65 -5.47 -35.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_12220720_2726874.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.474 kcal (2) G-P(sol) polarization free energy of solvation -29.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds