Wall clock time and date at job start Fri Mar 5 2021 22:28:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.76204 * 102.99881 * 2 1 4 4 C 1.38751 * 120.09214 * 359.72535 * 3 2 1 5 5 C 1.38253 * 119.96840 * 179.77360 * 4 3 2 6 6 C 1.50697 * 119.91618 * 180.23199 * 5 4 3 7 7 O 1.42905 * 109.47143 * 300.27201 * 6 5 4 8 8 Si 1.86297 * 109.47307 * 180.27271 * 6 5 4 9 9 H 1.48499 * 109.47390 * 179.97438 * 8 6 5 10 10 H 1.48501 * 109.46877 * 299.99735 * 8 6 5 11 11 H 1.48498 * 109.46953 * 59.99813 * 8 6 5 12 12 C 1.38228 * 120.16636 * 0.50011 * 5 4 3 13 13 C 1.38339 * 120.18877 * 359.75233 * 12 5 4 14 14 C 1.38443 * 120.02790 * 359.97438 * 13 12 5 15 15 O 1.36008 * 120.08182 * 179.97438 * 14 13 12 16 16 S 1.52196 * 114.00116 * 270.01972 * 15 14 13 17 17 O 1.42098 * 104.27717 * 191.07259 * 16 15 14 18 18 O 1.42097 * 104.27964 * 318.93376 * 16 15 14 19 19 C 1.81410 * 104.44691 * 75.00559 * 16 15 14 20 20 C 1.53001 * 109.47119 * 179.97438 * 19 16 15 21 21 C 1.53001 * 109.46949 * 180.02562 * 20 19 16 22 22 Si 1.86297 * 109.46901 * 180.02562 * 21 20 19 23 23 C 1.86297 * 109.47405 * 59.99550 * 22 21 20 24 24 C 1.86303 * 109.46986 * 180.02562 * 22 21 20 25 25 C 1.86306 * 109.46920 * 299.99539 * 22 21 20 26 26 H 1.09002 * 109.47124 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46975 * 60.00064 * 1 2 3 28 28 H 1.09004 * 109.47147 * 300.00027 * 1 2 3 29 29 H 1.07999 * 120.01998 * 0.02562 * 4 3 2 30 30 H 1.09003 * 109.47563 * 60.26434 * 6 5 4 31 31 H 0.96695 * 114.00483 * 179.97438 * 7 6 5 32 32 H 1.07998 * 119.89793 * 179.72628 * 12 5 4 33 33 H 1.07998 * 119.98724 * 179.97438 * 13 12 5 34 34 H 1.08997 * 109.46788 * 299.99843 * 19 16 15 35 35 H 1.08993 * 109.46766 * 59.99563 * 19 16 15 36 36 H 1.09007 * 109.46728 * 299.99843 * 20 19 16 37 37 H 1.09000 * 109.47078 * 59.99733 * 20 19 16 38 38 H 1.08997 * 109.46814 * 299.99821 * 21 20 19 39 39 H 1.08993 * 109.46910 * 59.99645 * 21 20 19 40 40 H 1.09003 * 109.46709 * 60.00169 * 23 22 21 41 41 H 1.09000 * 109.47237 * 179.97438 * 23 22 21 42 42 H 1.09000 * 109.47149 * 300.00158 * 23 22 21 43 43 H 1.09000 * 109.47511 * 59.99719 * 24 22 21 44 44 H 1.09000 * 109.47165 * 179.97438 * 24 22 21 45 45 H 1.08997 * 109.46725 * 299.99670 * 24 22 21 46 46 H 1.09000 * 109.47072 * 60.00187 * 25 22 21 47 47 H 1.09000 * 109.46908 * 180.02562 * 25 22 21 48 48 H 1.09000 * 109.47222 * 300.00063 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7169 0.0000 4 6 1.1971 2.6648 -0.0058 5 6 1.5110 4.0112 -0.0010 6 6 0.4095 5.0397 -0.0020 7 8 -0.3982 4.8715 -1.1688 8 14 1.1543 6.7473 -0.0031 9 1 0.0690 7.7608 -0.0047 10 1 1.9936 6.9220 1.2094 11 1 1.9941 6.9202 -1.2156 12 6 2.8326 4.4164 -0.0010 13 6 3.8481 3.4770 -0.0005 14 6 3.5429 2.1267 0.0005 15 8 4.5405 1.2022 0.0004 16 16 4.9941 0.7810 -1.3900 17 8 5.8245 -0.3489 -1.1604 18 8 3.7878 0.6650 -2.1320 19 6 5.9777 2.1826 -1.9892 20 6 6.4972 1.8770 -3.3954 21 6 7.3273 3.0588 -3.9005 22 14 7.9592 2.6870 -5.6131 23 6 6.5178 2.4055 -6.7594 24 6 8.9707 4.1257 -6.2278 25 6 9.0218 1.1575 -5.5644 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 0.1637 2.3510 -0.0098 30 1 -0.2070 4.9127 0.8879 31 1 -1.1290 5.5012 -1.2354 32 1 3.0728 5.4693 -0.0017 33 1 4.8796 3.7972 -0.0009 34 1 5.3556 3.0772 -2.0177 35 1 6.8209 2.3476 -1.3186 36 1 7.1194 0.9824 -3.3664 37 1 5.6541 1.7116 -4.0662 38 1 6.7055 3.9535 -3.9293 39 1 8.1703 3.2237 -3.2295 40 1 5.8962 3.3004 -6.7878 41 1 6.8876 2.1884 -7.7615 42 1 5.9265 1.5635 -6.3995 43 1 9.8140 4.2900 -5.5570 44 1 9.3408 3.9080 -7.2296 45 1 8.3493 5.0208 -6.2561 46 1 8.4305 0.3155 -5.2046 47 1 9.3919 0.9402 -6.5664 48 1 9.8652 1.3222 -4.8938 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV m_40_13446746_14927650.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 5 2021 22:28:34 Heat of formation + Delta-G solvation = -151.426487 kcal Electronic energy + Delta-G solvation = -29048.887008 eV Core-core repulsion = 25060.749911 eV Total energy + Delta-G solvation = -3988.137097 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 378.100 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.18474 -39.83387 -38.10246 -37.57731 -36.98551 -35.95342 -32.86010 -32.43023 -29.98073 -29.71612 -28.51336 -28.42480 -28.33106 -27.00471 -24.65736 -23.69538 -22.72161 -21.56929 -19.53284 -18.88326 -18.67484 -18.51634 -18.10683 -17.15801 -16.98245 -16.56807 -15.95757 -15.77745 -15.48323 -15.37488 -14.93915 -14.80692 -14.70417 -14.44468 -14.26812 -14.18703 -14.14576 -14.10299 -13.99081 -13.68156 -13.61321 -13.58070 -13.29937 -13.27375 -13.17416 -13.10873 -13.08019 -13.04265 -12.94999 -12.65150 -12.57774 -12.17544 -11.97969 -11.94454 -11.81843 -11.35201 -11.00280 -10.85268 -10.81583 -10.62131 -10.55493 -10.07675 -8.45875 -1.02188 -0.18607 -0.10427 0.33548 0.92327 1.11341 1.26755 1.29802 1.33665 1.71375 1.73421 1.82997 1.84444 2.10483 2.56727 2.69304 2.98169 3.08720 3.36926 3.45202 3.58251 3.60668 3.71522 3.86984 3.99605 4.02304 4.04387 4.08111 4.11841 4.26326 4.39066 4.52067 4.58895 4.63994 4.66061 4.69345 4.70894 4.73752 4.74756 4.75421 4.76575 4.78571 4.87105 4.92201 5.06282 5.24581 5.43362 5.44913 5.53732 5.56009 6.37044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 S -0.066 6.066 3 C -0.060 4.060 4 C -0.092 4.092 5 C -0.035 4.035 6 C -0.087 4.087 7 O -0.542 6.542 8 Si 0.943 3.057 9 H -0.252 1.252 10 H -0.246 1.246 11 H -0.243 1.243 12 C -0.118 4.118 13 C -0.101 4.101 14 C 0.080 3.920 15 O -0.657 6.657 16 S 2.575 3.425 17 O -0.922 6.922 18 O -0.931 6.931 19 C -0.652 4.652 20 C -0.100 4.100 21 C -0.406 4.406 22 Si 1.001 2.999 23 C -0.453 4.453 24 C -0.449 4.449 25 C -0.453 4.453 26 H 0.116 0.884 27 H 0.092 0.908 28 H 0.088 0.912 29 H 0.145 0.855 30 H 0.084 0.916 31 H 0.384 0.616 32 H 0.139 0.861 33 H 0.150 0.850 34 H 0.135 0.865 35 H 0.138 0.862 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.069 0.931 41 H 0.070 0.930 42 H 0.070 0.930 43 H 0.068 0.932 44 H 0.069 0.931 45 H 0.068 0.932 46 H 0.070 0.930 47 H 0.070 0.930 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.728 6.415 0.539 6.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.323 4.323 2 S 0.180 5.820 3 C -0.176 4.176 4 C -0.116 4.116 5 C -0.038 4.038 6 C -0.197 4.197 7 O -0.348 6.348 8 Si 0.764 3.236 9 H -0.176 1.176 10 H -0.169 1.169 11 H -0.166 1.166 12 C -0.139 4.139 13 C -0.122 4.122 14 C 0.031 3.969 15 O -0.615 6.615 16 S 2.670 3.330 17 O -0.921 6.921 18 O -0.930 6.930 19 C -0.779 4.779 20 C -0.139 4.139 21 C -0.492 4.492 22 Si 1.198 2.802 23 C -0.560 4.560 24 C -0.556 4.556 25 C -0.561 4.561 26 H 0.134 0.866 27 H 0.111 0.889 28 H 0.107 0.893 29 H 0.163 0.837 30 H 0.102 0.898 31 H 0.232 0.768 32 H 0.156 0.844 33 H 0.168 0.832 34 H 0.153 0.847 35 H 0.156 0.844 36 H 0.100 0.900 37 H 0.101 0.899 38 H 0.099 0.901 39 H 0.100 0.900 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.087 0.913 44 H 0.089 0.911 45 H 0.087 0.913 46 H 0.089 0.911 47 H 0.089 0.911 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.537 4.887 0.662 5.166 hybrid contribution -0.895 1.610 0.108 1.845 sum -2.431 6.498 0.769 6.980 Atomic orbital electron populations 1.23853 0.94187 1.08011 1.06240 1.85918 1.06917 0.99737 1.89384 1.22051 0.94456 0.99417 1.01660 1.20967 0.98666 0.91459 1.00528 1.19370 0.93273 0.93716 0.97423 1.24801 0.95559 1.07857 0.91530 1.86508 1.45782 1.60787 1.41763 0.85775 0.81096 0.74546 0.82139 1.17572 1.16928 1.16616 1.20849 0.91483 0.99691 1.01913 1.21149 1.01296 0.89867 0.99919 1.17304 0.83427 0.86088 1.10076 1.85767 1.55996 1.62062 1.57715 1.06324 0.76046 0.76968 0.73645 1.93654 1.70173 1.45794 1.82433 1.93714 1.41732 1.85669 1.71852 1.30973 1.16083 1.21594 1.09219 1.20962 1.01014 1.00351 0.91577 1.26167 1.04430 1.00525 1.18028 0.79339 0.67266 0.67367 0.66232 1.26170 1.14184 1.04975 1.10716 1.26100 1.09181 1.14050 1.06291 1.26176 1.09842 1.15453 1.04619 0.86587 0.88887 0.89267 0.83740 0.89798 0.76779 0.84405 0.83198 0.84676 0.84369 0.89981 0.89873 0.90060 0.90030 0.91173 0.91118 0.91064 0.91261 0.91148 0.91274 0.91070 0.91109 0.91152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.13 9.15 101.05 0.92 1.05 16 2 S -0.07 -0.23 20.62 -107.50 -2.22 -2.45 16 3 C -0.06 -0.19 5.49 -38.96 -0.21 -0.40 16 4 C -0.09 -0.11 8.92 -39.39 -0.35 -0.46 16 5 C -0.03 0.00 5.43 -104.62 -0.57 -0.57 16 6 C -0.09 0.19 2.81 36.00 0.10 0.29 16 7 O -0.54 0.89 12.74 -35.23 -0.45 0.45 16 8 Si 0.94 -2.36 25.06 -169.99 -4.26 -6.62 16 9 H -0.25 0.56 7.11 56.52 0.40 0.96 16 10 H -0.25 0.53 7.11 56.52 0.40 0.94 16 11 H -0.24 0.32 7.11 56.52 0.40 0.72 16 12 C -0.12 0.06 8.67 -39.55 -0.34 -0.28 16 13 C -0.10 0.01 8.46 -39.47 -0.33 -0.33 16 14 C 0.08 0.22 4.80 -39.07 -0.19 0.04 16 15 O -0.66 -2.38 9.45 -52.09 -0.49 -2.88 16 16 S 2.57 9.17 5.12 -107.50 -0.55 8.62 16 17 O -0.92 -6.29 18.09 -67.04 -1.21 -7.50 16 18 O -0.93 -4.96 15.04 -67.04 -1.01 -5.97 16 19 C -0.65 0.41 5.46 37.16 0.20 0.62 16 20 C -0.10 0.06 4.59 -26.73 -0.12 -0.06 16 21 C -0.41 0.82 4.45 37.16 0.17 0.99 16 22 Si 1.00 -2.51 12.19 -169.99 -2.07 -4.59 16 23 C -0.45 0.52 8.65 101.05 0.87 1.39 16 24 C -0.45 0.70 8.65 101.05 0.87 1.58 16 25 C -0.45 0.49 8.65 101.05 0.87 1.37 16 26 H 0.12 -0.24 8.14 -51.92 -0.42 -0.67 16 27 H 0.09 -0.12 7.74 -51.92 -0.40 -0.52 16 28 H 0.09 -0.21 7.76 -51.92 -0.40 -0.61 16 29 H 0.14 -0.09 5.88 -52.49 -0.31 -0.39 16 30 H 0.08 -0.35 7.96 -51.93 -0.41 -0.77 16 31 H 0.38 -2.31 8.74 45.56 0.40 -1.91 16 32 H 0.14 -0.38 4.86 -52.49 -0.26 -0.63 16 33 H 0.15 -0.51 7.49 -52.49 -0.39 -0.91 16 34 H 0.13 -0.34 6.60 -51.93 -0.34 -0.69 16 35 H 0.14 -0.37 8.14 -51.93 -0.42 -0.79 16 36 H 0.08 -0.09 7.79 -51.93 -0.40 -0.50 16 37 H 0.08 -0.11 7.79 -51.93 -0.40 -0.51 16 38 H 0.08 -0.21 7.96 -51.93 -0.41 -0.63 16 39 H 0.08 -0.21 7.96 -51.93 -0.41 -0.63 16 40 H 0.07 -0.08 7.96 -51.93 -0.41 -0.50 16 41 H 0.07 -0.07 7.96 -51.93 -0.41 -0.49 16 42 H 0.07 -0.07 7.79 -51.93 -0.40 -0.47 16 43 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 44 H 0.07 -0.09 7.96 -51.93 -0.41 -0.51 16 45 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 46 H 0.07 -0.06 7.79 -51.93 -0.40 -0.47 16 47 H 0.07 -0.07 7.96 -51.93 -0.41 -0.49 16 48 H 0.07 -0.08 7.96 -51.93 -0.41 -0.49 16 LS Contribution 409.96 15.07 6.18 6.18 Total: 0.00 -10.24 409.96 -11.29 -21.53 By element: Atomic # 1 Polarization: -4.89 SS G_CDS: -7.10 Total: -11.99 kcal Atomic # 6 Polarization: 3.32 SS G_CDS: 1.90 Total: 5.22 kcal Atomic # 8 Polarization: -12.74 SS G_CDS: -3.16 Total: -15.91 kcal Atomic # 14 Polarization: -4.87 SS G_CDS: -6.33 Total: -11.20 kcal Atomic # 16 Polarization: 8.93 SS G_CDS: -2.77 Total: 6.17 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -10.24 -11.29 -21.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_13446746_14927650.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.895 kcal (2) G-P(sol) polarization free energy of solvation -10.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds