Wall clock time and date at job start Fri Mar 5 2021 22:28:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.76204 * 102.99881 * 2 1 4 4 C 1.38751 * 120.09214 * 359.72535 * 3 2 1 5 5 C 1.38253 * 119.96840 * 179.77360 * 4 3 2 6 6 C 1.50697 * 119.91618 * 180.23199 * 5 4 3 7 7 O 1.42905 * 109.47143 * 300.27201 * 6 5 4 8 8 Si 1.86297 * 109.47307 * 180.27271 * 6 5 4 9 9 H 1.48499 * 109.47390 * 179.97438 * 8 6 5 10 10 H 1.48501 * 109.46877 * 299.99735 * 8 6 5 11 11 H 1.48498 * 109.46953 * 59.99813 * 8 6 5 12 12 C 1.38228 * 120.16636 * 0.50011 * 5 4 3 13 13 C 1.38339 * 120.18877 * 359.75233 * 12 5 4 14 14 C 1.38443 * 120.02790 * 359.97438 * 13 12 5 15 15 O 1.36008 * 120.08182 * 179.97438 * 14 13 12 16 16 S 1.52196 * 114.00116 * 270.01972 * 15 14 13 17 17 O 1.42098 * 104.27717 * 191.07259 * 16 15 14 18 18 O 1.42097 * 104.27964 * 318.93376 * 16 15 14 19 19 C 1.81410 * 104.44691 * 75.00559 * 16 15 14 20 20 C 1.53001 * 109.47119 * 179.97438 * 19 16 15 21 21 C 1.53001 * 109.46949 * 180.02562 * 20 19 16 22 22 Si 1.86297 * 109.46901 * 180.02562 * 21 20 19 23 23 C 1.86297 * 109.47405 * 59.99550 * 22 21 20 24 24 C 1.86303 * 109.46986 * 180.02562 * 22 21 20 25 25 C 1.86306 * 109.46920 * 299.99539 * 22 21 20 26 26 H 1.09002 * 109.47124 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46975 * 60.00064 * 1 2 3 28 28 H 1.09004 * 109.47147 * 300.00027 * 1 2 3 29 29 H 1.07999 * 120.01998 * 0.02562 * 4 3 2 30 30 H 1.09003 * 109.47563 * 60.26434 * 6 5 4 31 31 H 0.96695 * 114.00483 * 179.97438 * 7 6 5 32 32 H 1.07998 * 119.89793 * 179.72628 * 12 5 4 33 33 H 1.07998 * 119.98724 * 179.97438 * 13 12 5 34 34 H 1.08997 * 109.46788 * 299.99843 * 19 16 15 35 35 H 1.08993 * 109.46766 * 59.99563 * 19 16 15 36 36 H 1.09007 * 109.46728 * 299.99843 * 20 19 16 37 37 H 1.09000 * 109.47078 * 59.99733 * 20 19 16 38 38 H 1.08997 * 109.46814 * 299.99821 * 21 20 19 39 39 H 1.08993 * 109.46910 * 59.99645 * 21 20 19 40 40 H 1.09003 * 109.46709 * 60.00169 * 23 22 21 41 41 H 1.09000 * 109.47237 * 179.97438 * 23 22 21 42 42 H 1.09000 * 109.47149 * 300.00158 * 23 22 21 43 43 H 1.09000 * 109.47511 * 59.99719 * 24 22 21 44 44 H 1.09000 * 109.47165 * 179.97438 * 24 22 21 45 45 H 1.08997 * 109.46725 * 299.99670 * 24 22 21 46 46 H 1.09000 * 109.47072 * 60.00187 * 25 22 21 47 47 H 1.09000 * 109.46908 * 180.02562 * 25 22 21 48 48 H 1.09000 * 109.47222 * 300.00063 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7169 0.0000 4 6 1.1971 2.6648 -0.0058 5 6 1.5110 4.0112 -0.0010 6 6 0.4095 5.0397 -0.0020 7 8 -0.3982 4.8715 -1.1688 8 14 1.1543 6.7473 -0.0031 9 1 0.0690 7.7608 -0.0047 10 1 1.9936 6.9220 1.2094 11 1 1.9941 6.9202 -1.2156 12 6 2.8326 4.4164 -0.0010 13 6 3.8481 3.4770 -0.0005 14 6 3.5429 2.1267 0.0005 15 8 4.5405 1.2022 0.0004 16 16 4.9941 0.7810 -1.3900 17 8 5.8245 -0.3489 -1.1604 18 8 3.7878 0.6650 -2.1320 19 6 5.9777 2.1826 -1.9892 20 6 6.4972 1.8770 -3.3954 21 6 7.3273 3.0588 -3.9005 22 14 7.9592 2.6870 -5.6131 23 6 6.5178 2.4055 -6.7594 24 6 8.9707 4.1257 -6.2278 25 6 9.0218 1.1575 -5.5644 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 0.1637 2.3510 -0.0098 30 1 -0.2070 4.9127 0.8879 31 1 -1.1290 5.5012 -1.2354 32 1 3.0728 5.4693 -0.0017 33 1 4.8796 3.7972 -0.0009 34 1 5.3556 3.0772 -2.0177 35 1 6.8209 2.3476 -1.3186 36 1 7.1194 0.9824 -3.3664 37 1 5.6541 1.7116 -4.0662 38 1 6.7055 3.9535 -3.9293 39 1 8.1703 3.2237 -3.2295 40 1 5.8962 3.3004 -6.7878 41 1 6.8876 2.1884 -7.7615 42 1 5.9265 1.5635 -6.3995 43 1 9.8140 4.2900 -5.5570 44 1 9.3408 3.9080 -7.2296 45 1 8.3493 5.0208 -6.2561 46 1 8.4305 0.3155 -5.2046 47 1 9.3919 0.9402 -6.5664 48 1 9.8652 1.3222 -4.8938 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_40_13446746_14927650.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 5 2021 22:28:33 Heat of formation + Delta-G solvation = -149.695156 kcal Electronic energy + Delta-G solvation = -29048.811931 eV Core-core repulsion = 25060.749911 eV Total energy + Delta-G solvation = -3988.062021 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 378.100 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.27253 -39.82527 -38.39857 -37.42708 -37.26789 -35.87411 -32.84831 -32.39401 -29.92909 -29.59980 -28.38315 -28.31198 -28.22576 -26.92728 -24.64347 -23.68727 -22.62738 -21.64480 -19.68636 -18.95488 -18.75225 -18.47161 -18.13937 -17.16504 -17.02138 -16.51713 -15.84208 -15.82627 -15.48853 -15.32612 -14.91260 -14.73856 -14.63048 -14.38384 -14.24580 -14.14506 -14.05166 -13.97841 -13.93760 -13.59864 -13.56511 -13.52877 -13.42105 -13.33842 -13.23632 -13.15106 -13.05157 -12.99093 -12.98228 -12.54154 -12.50714 -11.96593 -11.84297 -11.82881 -11.77440 -11.42839 -11.02178 -10.71271 -10.68774 -10.47958 -10.40323 -10.02214 -8.64226 -1.15677 -0.23236 -0.10209 0.25347 0.98063 1.13700 1.28492 1.50399 1.57219 1.91024 1.95280 2.00379 2.02273 2.12502 2.51341 2.73521 2.86166 3.26617 3.39885 3.52580 3.65524 3.73745 3.77797 3.94508 4.08089 4.15983 4.16189 4.17878 4.26886 4.41263 4.49412 4.60684 4.66504 4.69130 4.76899 4.78407 4.81188 4.83274 4.86168 4.86599 4.87558 4.87961 4.89050 5.08806 5.09578 5.45019 5.46696 5.59701 5.66255 5.66876 6.80757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 S -0.148 6.148 3 C -0.074 4.074 4 C -0.099 4.099 5 C -0.041 4.041 6 C -0.090 4.090 7 O -0.561 6.561 8 Si 0.973 3.027 9 H -0.256 1.256 10 H -0.247 1.247 11 H -0.258 1.258 12 C -0.119 4.119 13 C -0.097 4.097 14 C 0.052 3.948 15 O -0.665 6.665 16 S 2.563 3.437 17 O -0.972 6.972 18 O -0.961 6.961 19 C -0.627 4.627 20 C -0.120 4.120 21 C -0.409 4.409 22 Si 1.067 2.933 23 C -0.473 4.473 24 C -0.460 4.460 25 C -0.475 4.475 26 H 0.127 0.873 27 H 0.097 0.903 28 H 0.106 0.894 29 H 0.156 0.844 30 H 0.106 0.894 31 H 0.402 0.598 32 H 0.163 0.837 33 H 0.185 0.815 34 H 0.162 0.838 35 H 0.166 0.834 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.095 0.905 39 H 0.094 0.906 40 H 0.072 0.928 41 H 0.066 0.934 42 H 0.065 0.935 43 H 0.071 0.929 44 H 0.065 0.935 45 H 0.071 0.929 46 H 0.064 0.936 47 H 0.066 0.934 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.857 9.367 0.879 9.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.304 4.304 2 S 0.097 5.903 3 C -0.190 4.190 4 C -0.123 4.123 5 C -0.044 4.044 6 C -0.199 4.199 7 O -0.371 6.371 8 Si 0.795 3.205 9 H -0.180 1.180 10 H -0.171 1.171 11 H -0.183 1.183 12 C -0.140 4.140 13 C -0.118 4.118 14 C 0.004 3.996 15 O -0.624 6.624 16 S 2.664 3.336 17 O -0.970 6.970 18 O -0.959 6.959 19 C -0.758 4.758 20 C -0.158 4.158 21 C -0.495 4.495 22 Si 1.259 2.741 23 C -0.579 4.579 24 C -0.567 4.567 25 C -0.581 4.581 26 H 0.145 0.855 27 H 0.116 0.884 28 H 0.125 0.875 29 H 0.173 0.827 30 H 0.123 0.877 31 H 0.253 0.747 32 H 0.180 0.820 33 H 0.202 0.798 34 H 0.179 0.821 35 H 0.184 0.816 36 H 0.100 0.900 37 H 0.103 0.897 38 H 0.114 0.886 39 H 0.113 0.887 40 H 0.091 0.909 41 H 0.085 0.915 42 H 0.084 0.916 43 H 0.090 0.910 44 H 0.084 0.916 45 H 0.091 0.909 46 H 0.084 0.916 47 H 0.085 0.915 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.708 7.798 1.008 8.046 hybrid contribution -0.895 0.787 -0.044 1.193 sum -2.603 8.585 0.965 9.022 Atomic orbital electron populations 1.23897 0.90131 1.09090 1.07275 1.86091 1.11607 1.02400 1.90183 1.22156 0.95391 0.98475 1.02979 1.21174 0.98837 0.91785 1.00548 1.19776 0.94535 0.93755 0.96350 1.24916 0.95462 1.07263 0.92260 1.86462 1.46693 1.61895 1.42021 0.85348 0.80381 0.73665 0.81065 1.18006 1.17051 1.18253 1.21227 0.91168 1.00812 1.00764 1.21568 1.03314 0.88477 0.98467 1.17751 0.83230 0.87043 1.11589 1.85723 1.56373 1.62809 1.57502 1.06448 0.75808 0.77918 0.73392 1.93582 1.70830 1.49370 1.83226 1.93666 1.43317 1.86657 1.72293 1.30811 1.16271 1.19242 1.09508 1.21207 1.01657 1.01379 0.91599 1.26230 1.04837 1.00266 1.18199 0.78327 0.65170 0.65365 0.65206 1.26428 1.15334 1.04890 1.11264 1.26236 1.09579 1.14701 1.06203 1.26451 1.10503 1.16711 1.04411 0.85460 0.88388 0.87548 0.82682 0.87673 0.74705 0.82013 0.79757 0.82060 0.81595 0.89966 0.89660 0.88610 0.88694 0.90925 0.91500 0.91621 0.91006 0.91602 0.90938 0.91650 0.91490 0.90980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.10 9.15 113.37 1.04 1.14 16 2 S -0.15 -1.43 20.62 -56.49 -1.17 -2.59 16 3 C -0.07 -0.57 5.49 22.67 0.12 -0.44 16 4 C -0.10 -0.25 8.92 22.40 0.20 -0.05 16 5 C -0.04 0.03 5.43 -19.86 -0.11 -0.08 16 6 C -0.09 0.54 2.81 71.24 0.20 0.74 16 7 O -0.56 2.55 12.74 -148.98 -1.90 0.65 16 8 Si 0.97 -6.70 25.06 68.60 1.72 -4.98 16 9 H -0.26 1.58 7.11 99.48 0.71 2.29 16 10 H -0.25 1.65 7.11 99.48 0.71 2.35 16 11 H -0.26 1.12 7.11 99.48 0.71 1.83 16 12 C -0.12 0.32 8.67 22.29 0.19 0.52 16 13 C -0.10 0.14 8.46 22.34 0.19 0.33 16 14 C 0.05 0.33 4.80 22.60 0.11 0.44 16 15 O -0.67 -5.93 9.45 -62.73 -0.59 -6.53 16 16 S 2.56 22.61 5.12 -56.49 -0.29 22.32 16 17 O -0.97 -16.12 18.09 -118.57 -2.15 -18.27 16 18 O -0.96 -12.69 15.04 -118.57 -1.78 -14.47 16 19 C -0.63 1.53 5.46 71.98 0.39 1.92 16 20 C -0.12 0.23 4.59 30.59 0.14 0.37 16 21 C -0.41 2.51 4.45 71.98 0.32 2.83 16 22 Si 1.07 -6.12 12.19 68.60 0.84 -5.28 16 23 C -0.47 1.00 8.65 113.37 0.98 1.98 16 24 C -0.46 1.91 8.65 113.37 0.98 2.89 16 25 C -0.48 0.86 8.65 113.37 0.98 1.84 16 26 H 0.13 -0.44 8.14 -2.39 -0.02 -0.46 16 27 H 0.10 -0.18 7.74 -2.39 -0.02 -0.20 16 28 H 0.11 -0.48 7.76 -2.39 -0.02 -0.50 16 29 H 0.16 -0.16 5.88 -2.91 -0.02 -0.18 16 30 H 0.11 -1.09 7.96 -2.39 -0.02 -1.11 16 31 H 0.40 -5.39 8.74 -74.06 -0.65 -6.03 16 32 H 0.16 -1.31 4.86 -2.91 -0.01 -1.32 16 33 H 0.19 -1.78 7.49 -2.91 -0.02 -1.80 16 34 H 0.16 -1.22 6.60 -2.39 -0.02 -1.24 16 35 H 0.17 -1.29 8.14 -2.39 -0.02 -1.30 16 36 H 0.08 -0.16 7.79 -2.38 -0.02 -0.18 16 37 H 0.08 -0.21 7.79 -2.39 -0.02 -0.23 16 38 H 0.10 -0.81 7.96 -2.39 -0.02 -0.83 16 39 H 0.09 -0.78 7.96 -2.39 -0.02 -0.80 16 40 H 0.07 -0.19 7.96 -2.39 -0.02 -0.21 16 41 H 0.07 -0.10 7.96 -2.39 -0.02 -0.12 16 42 H 0.06 -0.07 7.79 -2.39 -0.02 -0.09 16 43 H 0.07 -0.32 7.96 -2.39 -0.02 -0.34 16 44 H 0.06 -0.20 7.96 -2.39 -0.02 -0.22 16 45 H 0.07 -0.33 7.96 -2.39 -0.02 -0.35 16 46 H 0.06 -0.05 7.79 -2.39 -0.02 -0.07 16 47 H 0.07 -0.09 7.96 -2.39 -0.02 -0.10 16 48 H 0.07 -0.16 7.96 -2.39 -0.02 -0.18 16 Total: 0.00 -27.60 409.96 1.49 -26.11 By element: Atomic # 1 Polarization: -12.45 SS G_CDS: 1.06 Total: -11.38 kcal Atomic # 6 Polarization: 8.67 SS G_CDS: 5.74 Total: 14.41 kcal Atomic # 8 Polarization: -32.19 SS G_CDS: -6.42 Total: -38.61 kcal Atomic # 14 Polarization: -12.82 SS G_CDS: 2.56 Total: -10.26 kcal Atomic # 16 Polarization: 21.18 SS G_CDS: -1.45 Total: 19.73 kcal Total: -27.60 1.49 -26.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_13446746_14927650.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.584 kcal (2) G-P(sol) polarization free energy of solvation -27.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds