Wall clock time and date at job start Fri Mar 5 2021 23:07:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 C 1.76202 * 102.99744 * 2 1 4 4 C 1.39371 * 120.09467 * 180.02562 * 3 2 1 5 5 O 1.36007 * 120.07869 * 359.97438 * 4 3 2 6 6 S 1.52205 * 114.00364 * 265.76837 * 5 4 3 7 7 O 1.42106 * 104.27240 * 40.51353 * 6 5 4 8 8 O 1.42094 * 104.27683 * 168.36736 * 6 5 4 9 9 C 1.81402 * 104.44977 * 284.44272 * 6 5 4 10 10 H 1.08995 * 112.84590 * 54.21882 * 9 6 5 11 11 C 1.53781 * 113.61005 * 185.41569 * 9 6 5 12 12 C 1.53784 * 87.08058 * 139.98006 * 11 9 6 13 13 H 1.08992 * 113.61909 * 220.02192 * 12 11 9 14 14 O 1.42905 * 113.61420 * 89.19700 * 12 11 9 15 15 C 1.42897 * 113.99768 * 150.00396 * 14 12 11 16 16 C 1.50702 * 109.47045 * 179.97438 * 15 14 12 17 17 C 1.38239 * 120.00044 * 269.72672 * 16 15 14 18 18 C 1.38231 * 119.99768 * 179.74354 * 17 16 15 19 19 C 1.38244 * 120.00367 * 0.52592 * 18 17 16 20 20 C 1.38232 * 119.99457 * 359.74751 * 19 18 17 21 21 C 1.38233 * 119.99871 * 89.99787 * 16 15 14 22 22 C 1.53783 * 113.61231 * 282.91388 * 9 6 5 23 23 C 1.38485 * 119.83714 * 180.02562 * 4 3 2 24 24 C 1.38302 * 120.01971 * 359.97438 * 23 4 3 25 25 C 1.38264 * 120.19587 * 0.02582 * 24 23 4 26 26 C 1.50699 * 119.92008 * 179.97438 * 25 24 23 27 27 O 1.42894 * 109.47384 * 119.99708 * 26 25 24 28 28 Si 1.86301 * 109.46877 * 359.97438 * 26 25 24 29 29 C 1.38203 * 120.16441 * 0.22904 * 25 24 23 30 30 H 1.08993 * 109.47084 * 300.00008 * 1 2 3 31 31 H 1.09002 * 109.47266 * 60.00327 * 1 2 3 32 32 H 1.09003 * 109.46930 * 180.02562 * 1 2 3 33 33 H 1.08994 * 113.61406 * 254.52577 * 11 9 6 34 34 H 1.08994 * 113.61687 * 25.34804 * 11 9 6 35 35 H 1.08999 * 109.46858 * 299.99619 * 15 14 12 36 36 H 1.08998 * 109.47449 * 60.00042 * 15 14 12 37 37 H 1.08003 * 119.99968 * 0.02562 * 17 16 15 38 38 H 1.07998 * 120.00059 * 180.29826 * 18 17 16 39 39 H 1.07995 * 120.00108 * 179.77371 * 19 18 17 40 40 H 1.08004 * 120.00002 * 179.97438 * 20 19 18 41 41 H 1.07999 * 120.00413 * 359.97438 * 21 16 15 42 42 H 1.09000 * 113.61431 * 334.56702 * 22 9 6 43 43 H 1.08995 * 113.61487 * 105.46833 * 22 9 6 44 44 H 1.08002 * 119.98603 * 180.02562 * 23 4 3 45 45 H 1.08001 * 119.89686 * 180.02562 * 24 23 4 46 46 H 1.08999 * 109.46967 * 239.99934 * 26 25 24 47 47 H 0.96696 * 114.00274 * 179.97438 * 27 26 25 48 48 H 1.48502 * 110.00014 * 60.00417 * 28 26 25 49 49 H 1.48502 * 109.99903 * 181.32151 * 28 26 25 50 50 H 1.08000 * 120.01668 * 179.74291 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 3.5425 2.1266 -0.0005 5 8 4.5400 1.2021 -0.0005 6 16 5.0643 0.8569 1.3860 7 8 3.8985 0.7965 2.1964 8 8 5.8728 -0.2930 1.1787 9 6 6.0888 2.2803 1.8499 10 1 5.5541 3.2274 1.7795 11 6 6.8376 2.0928 3.1799 12 6 8.0391 2.7799 2.5097 13 1 8.9980 2.3282 2.7635 14 8 8.0398 4.2016 2.6548 15 6 9.3450 4.7827 2.6794 16 6 9.2267 6.2771 2.8344 17 6 9.1467 7.0840 1.7148 18 6 9.0329 8.4542 1.8572 19 6 9.0100 9.0186 3.1190 20 6 9.0958 8.2121 4.2384 21 6 9.2039 6.8413 4.0962 22 6 7.4665 2.2962 1.1669 23 6 3.8478 3.4774 0.0000 24 6 2.8324 4.4163 0.0005 25 6 1.5105 4.0111 0.0011 26 6 0.4090 5.0395 0.0022 27 8 -0.3995 4.8729 -1.1641 28 14 1.1539 6.7471 0.0035 29 6 1.1968 2.6651 0.0059 30 1 -0.3633 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 6.4121 2.6643 4.0048 34 1 7.0172 1.0489 3.4365 35 1 9.9091 4.3736 3.5176 36 1 9.8621 4.5543 1.7474 37 1 9.1685 6.6434 0.7290 38 1 8.9655 9.0842 0.9826 39 1 8.9248 10.0894 3.2301 40 1 9.0783 8.6530 5.2242 41 1 9.2704 6.2113 4.9708 42 1 7.8194 1.3078 0.8725 43 1 7.5487 3.0317 0.3667 44 1 4.8793 3.7976 -0.0008 45 1 3.0728 5.4692 0.0005 46 1 -0.2067 4.9114 0.8925 47 1 -1.1304 5.5026 -1.2293 48 1 1.9961 6.9348 -1.2051 49 1 0.0782 7.7704 0.0368 50 1 0.1634 2.3512 0.0105 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV m_40_13446746_15608174.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 5 2021 23:07:23 Heat of formation + Delta-G solvation = -72.897897 kcal Electronic energy + Delta-G solvation = -36704.182005 eV Core-core repulsion = 31884.306371 eV Total energy + Delta-G solvation = -4819.875633 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 423.099 amu Computer time = 2.69 seconds Orbital eigenvalues (eV) -42.15512 -40.84935 -40.01555 -39.80300 -38.14409 -37.64895 -37.07768 -37.00233 -32.84611 -32.73351 -32.41061 -31.86441 -29.96445 -27.58301 -27.16337 -26.92182 -26.55802 -24.53561 -23.55306 -23.48962 -22.34800 -21.78183 -21.10764 -19.55204 -19.06109 -18.77647 -18.65035 -18.10480 -17.92244 -17.57012 -17.20633 -16.84853 -16.67337 -16.64670 -16.18143 -15.80369 -15.71543 -15.39170 -15.34057 -15.25705 -14.99081 -14.78943 -14.46238 -14.38554 -14.31940 -14.12657 -14.00172 -13.92093 -13.84639 -13.67608 -13.56248 -13.53413 -13.35725 -13.24703 -13.08235 -12.95524 -12.65554 -12.51934 -12.21591 -12.10663 -11.95881 -11.90099 -11.82635 -11.36142 -11.19596 -10.98808 -10.71003 -10.67012 -10.06785 -9.87827 -9.82455 -8.47444 -5.09300 -1.00378 -0.15544 -0.07645 0.27042 0.33925 0.44542 1.09013 1.09649 1.30490 1.47114 1.82584 2.12332 2.32491 2.60368 2.78937 2.93588 3.03067 3.05044 3.25781 3.36482 3.41285 3.59502 3.66421 3.73360 3.81680 3.85801 3.91521 4.02170 4.03528 4.05245 4.06835 4.07799 4.16054 4.18370 4.23221 4.30225 4.33416 4.41384 4.52304 4.56501 4.61857 4.64587 4.66746 4.68335 4.71720 4.76783 4.81193 4.91592 4.99174 5.06709 5.10612 5.46530 5.48293 5.56227 5.58798 6.00414 6.07141 6.25451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 S -0.072 6.072 3 C -0.061 4.061 4 C 0.086 3.914 5 O -0.655 6.655 6 S 2.586 3.414 7 O -0.935 6.935 8 O -0.921 6.921 9 C -0.643 4.643 10 H 0.160 0.840 11 C -0.107 4.107 12 C 0.079 3.921 13 H 0.089 0.911 14 O -0.355 6.355 15 C 0.101 3.899 16 C -0.095 4.095 17 C -0.099 4.099 18 C -0.123 4.123 19 C -0.112 4.112 20 C -0.123 4.123 21 C -0.098 4.098 22 C -0.131 4.131 23 C -0.105 4.105 24 C -0.105 4.105 25 C -0.034 4.034 26 C -0.081 4.081 27 O -0.534 6.534 28 Si 0.683 3.317 29 C -0.093 4.093 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.116 0.884 33 H 0.102 0.898 34 H 0.105 0.895 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.123 0.877 38 H 0.124 0.876 39 H 0.124 0.876 40 H 0.125 0.875 41 H 0.123 0.877 42 H 0.112 0.888 43 H 0.095 0.905 44 H 0.152 0.848 45 H 0.145 0.855 46 H 0.084 0.916 47 H 0.384 0.616 48 H -0.250 1.250 49 H -0.257 1.257 50 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.181 5.810 2.437 6.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.322 4.322 2 S 0.173 5.827 3 C -0.177 4.177 4 C 0.038 3.962 5 O -0.614 6.614 6 S 2.681 3.319 7 O -0.933 6.933 8 O -0.919 6.919 9 C -0.750 4.750 10 H 0.177 0.823 11 C -0.146 4.146 12 C 0.019 3.981 13 H 0.107 0.893 14 O -0.274 6.274 15 C 0.025 3.975 16 C -0.095 4.095 17 C -0.117 4.117 18 C -0.141 4.141 19 C -0.130 4.130 20 C -0.141 4.141 21 C -0.116 4.116 22 C -0.170 4.170 23 C -0.126 4.126 24 C -0.126 4.126 25 C -0.037 4.037 26 C -0.190 4.190 27 O -0.342 6.342 28 Si 0.583 3.417 29 C -0.118 4.118 30 H 0.109 0.891 31 H 0.108 0.892 32 H 0.134 0.866 33 H 0.120 0.880 34 H 0.124 0.876 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.141 0.859 38 H 0.142 0.858 39 H 0.142 0.858 40 H 0.143 0.857 41 H 0.141 0.859 42 H 0.130 0.870 43 H 0.113 0.887 44 H 0.169 0.831 45 H 0.162 0.838 46 H 0.102 0.898 47 H 0.232 0.768 48 H -0.174 1.174 49 H -0.181 1.181 50 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 0.892 4.331 1.775 4.765 hybrid contribution -1.373 1.384 -0.590 2.037 sum -0.481 5.715 1.186 5.857 Atomic orbital electron populations 1.23840 0.94129 1.07998 1.06215 1.85897 1.06946 0.99975 1.89834 1.21976 0.94434 0.99222 1.02037 1.17283 0.83452 0.85982 1.09531 1.85737 1.55244 1.62346 1.58040 1.05979 0.75704 0.76713 0.73472 1.93686 1.44264 1.86337 1.69007 1.93644 1.71259 1.44127 1.82881 1.32262 1.11776 1.22320 1.08623 0.82269 1.22856 0.95178 1.02351 0.94221 1.22815 0.98247 0.82126 0.94866 0.89315 1.87967 1.27590 1.18253 1.93595 1.21447 0.84853 0.89916 1.01293 1.19547 1.02411 0.93800 0.93706 1.21075 0.98672 0.93702 0.98221 1.21193 1.00311 0.94958 0.97660 1.21266 0.98938 1.00123 0.92675 1.21201 1.00213 0.93645 0.99016 1.21088 0.98597 0.95201 0.96698 1.23246 0.90662 1.04305 0.98738 1.21223 1.01425 0.89867 1.00121 1.20812 0.91201 0.99538 1.01062 1.19332 0.93384 0.93467 0.97540 1.24853 0.95288 1.08088 0.90804 1.86573 1.45338 1.59434 1.42875 0.94997 0.83863 0.73876 0.88963 1.20963 0.98555 0.91585 1.00663 0.89079 0.89159 0.86567 0.87973 0.87648 0.91918 0.91991 0.85940 0.85778 0.85840 0.85743 0.85877 0.86974 0.88666 0.83076 0.83761 0.89777 0.76791 1.17447 1.18143 0.83962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.07 9.15 101.05 0.92 0.99 16 2 S -0.07 -0.28 21.24 -107.50 -2.28 -2.56 16 3 C -0.06 -0.22 5.58 -38.95 -0.22 -0.44 16 4 C 0.09 0.28 4.72 -39.07 -0.18 0.09 16 5 O -0.66 -2.55 9.43 -52.09 -0.49 -3.05 16 6 S 2.59 9.01 5.09 -107.50 -0.55 8.46 16 7 O -0.93 -5.07 15.70 -67.04 -1.05 -6.12 16 8 O -0.92 -5.66 17.42 -67.04 -1.17 -6.83 16 9 C -0.64 0.15 3.72 -25.92 -0.10 0.05 16 10 H 0.16 -0.27 6.08 -51.93 -0.32 -0.58 16 11 C -0.11 0.11 7.50 -25.92 -0.19 -0.09 16 12 C 0.08 -0.10 4.37 -25.91 -0.11 -0.21 16 13 H 0.09 -0.26 7.87 -51.93 -0.41 -0.67 16 14 O -0.36 -0.02 10.26 -35.23 -0.36 -0.38 16 15 C 0.10 -0.11 5.90 36.01 0.21 0.11 16 16 C -0.09 -0.02 5.51 -104.62 -0.58 -0.60 16 17 C -0.10 0.00 9.70 -39.58 -0.38 -0.38 16 18 C -0.12 0.03 10.05 -39.58 -0.40 -0.37 16 19 C -0.11 0.03 10.05 -39.58 -0.40 -0.37 16 20 C -0.12 0.02 10.05 -39.58 -0.40 -0.38 16 21 C -0.10 -0.01 9.70 -39.58 -0.38 -0.40 16 22 C -0.13 0.15 7.48 -25.91 -0.19 -0.04 16 23 C -0.11 -0.04 8.51 -39.47 -0.34 -0.38 16 24 C -0.11 0.03 8.66 -39.55 -0.34 -0.31 16 25 C -0.03 -0.02 5.42 -104.63 -0.57 -0.59 16 26 C -0.08 0.10 2.81 36.01 0.10 0.20 16 27 O -0.53 0.13 12.75 -35.23 -0.45 -0.32 16 28 Si 0.68 -1.41 29.78 -169.99 -5.06 -6.47 16 29 C -0.09 -0.16 8.93 -39.39 -0.35 -0.51 16 30 H 0.09 -0.13 7.74 -51.93 -0.40 -0.53 16 31 H 0.09 -0.12 7.76 -51.92 -0.40 -0.52 16 32 H 0.12 -0.21 8.14 -51.92 -0.42 -0.63 16 33 H 0.10 -0.15 8.14 -51.93 -0.42 -0.57 16 34 H 0.11 -0.22 8.10 -51.93 -0.42 -0.64 16 35 H 0.06 -0.14 8.09 -51.93 -0.42 -0.56 16 36 H 0.06 -0.13 8.08 -51.93 -0.42 -0.55 16 37 H 0.12 -0.18 8.06 -52.48 -0.42 -0.60 16 38 H 0.12 -0.24 8.06 -52.49 -0.42 -0.66 16 39 H 0.12 -0.24 8.06 -52.49 -0.42 -0.66 16 40 H 0.12 -0.23 8.06 -52.48 -0.42 -0.65 16 41 H 0.12 -0.15 8.06 -52.49 -0.42 -0.58 16 42 H 0.11 -0.15 7.54 -51.93 -0.39 -0.54 16 43 H 0.09 -0.21 8.14 -51.93 -0.42 -0.63 16 44 H 0.15 -0.39 6.89 -52.49 -0.36 -0.75 16 45 H 0.15 -0.42 4.86 -52.49 -0.26 -0.67 16 46 H 0.08 -0.26 7.96 -51.93 -0.41 -0.68 16 47 H 0.38 -1.61 8.74 45.56 0.40 -1.21 16 48 H -0.25 -0.21 7.11 56.52 0.40 0.19 16 49 H -0.26 0.02 7.11 56.52 0.40 0.42 16 50 H 0.14 0.02 5.88 -52.49 -0.31 -0.29 16 LS Contribution 433.98 15.07 6.54 6.54 Total: 0.00 -11.45 433.98 -15.47 -26.92 By element: Atomic # 1 Polarization: -5.87 SS G_CDS: -6.70 Total: -12.57 kcal Atomic # 6 Polarization: 0.28 SS G_CDS: -3.90 Total: -3.61 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: -3.52 Total: -16.70 kcal Atomic # 14 Polarization: -1.41 SS G_CDS: -5.06 Total: -6.47 kcal Atomic # 16 Polarization: 8.73 SS G_CDS: -2.83 Total: 5.90 kcal Total LS contribution 6.54 Total: 6.54 kcal Total: -11.45 -15.47 -26.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_13446746_15608174.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.980 kcal (2) G-P(sol) polarization free energy of solvation -11.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -15.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.69 seconds