Wall clock time and date at job start Fri Mar 5 2021 23:07:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 C 1.76202 * 102.99744 * 2 1 4 4 C 1.39371 * 120.09467 * 180.02562 * 3 2 1 5 5 O 1.36007 * 120.07869 * 359.97438 * 4 3 2 6 6 S 1.52205 * 114.00364 * 265.76837 * 5 4 3 7 7 O 1.42106 * 104.27240 * 40.51353 * 6 5 4 8 8 O 1.42094 * 104.27683 * 168.36736 * 6 5 4 9 9 C 1.81402 * 104.44977 * 284.44272 * 6 5 4 10 10 H 1.08995 * 112.84590 * 54.21882 * 9 6 5 11 11 C 1.53781 * 113.61005 * 185.41569 * 9 6 5 12 12 C 1.53784 * 87.08058 * 139.98006 * 11 9 6 13 13 H 1.08992 * 113.61909 * 220.02192 * 12 11 9 14 14 O 1.42905 * 113.61420 * 89.19700 * 12 11 9 15 15 C 1.42897 * 113.99768 * 150.00396 * 14 12 11 16 16 C 1.50702 * 109.47045 * 179.97438 * 15 14 12 17 17 C 1.38239 * 120.00044 * 269.72672 * 16 15 14 18 18 C 1.38231 * 119.99768 * 179.74354 * 17 16 15 19 19 C 1.38244 * 120.00367 * 0.52592 * 18 17 16 20 20 C 1.38232 * 119.99457 * 359.74751 * 19 18 17 21 21 C 1.38233 * 119.99871 * 89.99787 * 16 15 14 22 22 C 1.53783 * 113.61231 * 282.91388 * 9 6 5 23 23 C 1.38485 * 119.83714 * 180.02562 * 4 3 2 24 24 C 1.38302 * 120.01971 * 359.97438 * 23 4 3 25 25 C 1.38264 * 120.19587 * 0.02582 * 24 23 4 26 26 C 1.50699 * 119.92008 * 179.97438 * 25 24 23 27 27 O 1.42894 * 109.47384 * 119.99708 * 26 25 24 28 28 Si 1.86301 * 109.46877 * 359.97438 * 26 25 24 29 29 C 1.38203 * 120.16441 * 0.22904 * 25 24 23 30 30 H 1.08993 * 109.47084 * 300.00008 * 1 2 3 31 31 H 1.09002 * 109.47266 * 60.00327 * 1 2 3 32 32 H 1.09003 * 109.46930 * 180.02562 * 1 2 3 33 33 H 1.08994 * 113.61406 * 254.52577 * 11 9 6 34 34 H 1.08994 * 113.61687 * 25.34804 * 11 9 6 35 35 H 1.08999 * 109.46858 * 299.99619 * 15 14 12 36 36 H 1.08998 * 109.47449 * 60.00042 * 15 14 12 37 37 H 1.08003 * 119.99968 * 0.02562 * 17 16 15 38 38 H 1.07998 * 120.00059 * 180.29826 * 18 17 16 39 39 H 1.07995 * 120.00108 * 179.77371 * 19 18 17 40 40 H 1.08004 * 120.00002 * 179.97438 * 20 19 18 41 41 H 1.07999 * 120.00413 * 359.97438 * 21 16 15 42 42 H 1.09000 * 113.61431 * 334.56702 * 22 9 6 43 43 H 1.08995 * 113.61487 * 105.46833 * 22 9 6 44 44 H 1.08002 * 119.98603 * 180.02562 * 23 4 3 45 45 H 1.08001 * 119.89686 * 180.02562 * 24 23 4 46 46 H 1.08999 * 109.46967 * 239.99934 * 26 25 24 47 47 H 0.96696 * 114.00274 * 179.97438 * 27 26 25 48 48 H 1.48502 * 110.00014 * 60.00417 * 28 26 25 49 49 H 1.48502 * 109.99903 * 181.32151 * 28 26 25 50 50 H 1.08000 * 120.01668 * 179.74291 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 3.5425 2.1266 -0.0005 5 8 4.5400 1.2021 -0.0005 6 16 5.0643 0.8569 1.3860 7 8 3.8985 0.7965 2.1964 8 8 5.8728 -0.2930 1.1787 9 6 6.0888 2.2803 1.8499 10 1 5.5541 3.2274 1.7795 11 6 6.8376 2.0928 3.1799 12 6 8.0391 2.7799 2.5097 13 1 8.9980 2.3282 2.7635 14 8 8.0398 4.2016 2.6548 15 6 9.3450 4.7827 2.6794 16 6 9.2267 6.2771 2.8344 17 6 9.1467 7.0840 1.7148 18 6 9.0329 8.4542 1.8572 19 6 9.0100 9.0186 3.1190 20 6 9.0958 8.2121 4.2384 21 6 9.2039 6.8413 4.0962 22 6 7.4665 2.2962 1.1669 23 6 3.8478 3.4774 0.0000 24 6 2.8324 4.4163 0.0005 25 6 1.5105 4.0111 0.0011 26 6 0.4090 5.0395 0.0022 27 8 -0.3995 4.8729 -1.1641 28 14 1.1539 6.7471 0.0035 29 6 1.1968 2.6651 0.0059 30 1 -0.3633 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 6.4121 2.6643 4.0048 34 1 7.0172 1.0489 3.4365 35 1 9.9091 4.3736 3.5176 36 1 9.8621 4.5543 1.7474 37 1 9.1685 6.6434 0.7290 38 1 8.9655 9.0842 0.9826 39 1 8.9248 10.0894 3.2301 40 1 9.0783 8.6530 5.2242 41 1 9.2704 6.2113 4.9708 42 1 7.8194 1.3078 0.8725 43 1 7.5487 3.0317 0.3667 44 1 4.8793 3.7976 -0.0008 45 1 3.0728 5.4692 0.0005 46 1 -0.2067 4.9114 0.8925 47 1 -1.1304 5.5026 -1.2293 48 1 1.9961 6.9348 -1.2051 49 1 0.0782 7.7704 0.0368 50 1 0.1634 2.3512 0.0105 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_40_13446746_15608174.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 5 2021 23:07:22 Heat of formation + Delta-G solvation = -72.658693 kcal Electronic energy + Delta-G solvation = -36704.171632 eV Core-core repulsion = 31884.306371 eV Total energy + Delta-G solvation = -4819.865261 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 423.099 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -42.28313 -40.75678 -39.92997 -39.83774 -38.43195 -37.59948 -37.30031 -36.99288 -32.87322 -32.64624 -32.43740 -31.76408 -29.94989 -27.51236 -27.09601 -26.88044 -26.48336 -24.57568 -23.54067 -23.45410 -22.24311 -21.87246 -21.07716 -19.66899 -19.19271 -18.87834 -18.62262 -18.20481 -17.86231 -17.49461 -17.17669 -16.91113 -16.60614 -16.57776 -16.17244 -15.80588 -15.70033 -15.39241 -15.34035 -15.25407 -15.00527 -14.76749 -14.51502 -14.34091 -14.24356 -14.14128 -14.03405 -13.89820 -13.81275 -13.61709 -13.56898 -13.51795 -13.49260 -13.34003 -13.25246 -13.12599 -12.63475 -12.53481 -12.10624 -12.02186 -11.88865 -11.83542 -11.71253 -11.48069 -11.20403 -11.05588 -10.62293 -10.54873 -10.09968 -9.79890 -9.74199 -8.69203 -4.92495 -1.16393 -0.25095 -0.12474 0.21794 0.35349 0.52422 0.93947 1.18108 1.28932 1.60793 1.95054 2.09118 2.43347 2.47743 2.72306 2.95272 3.02316 3.17372 3.27989 3.40687 3.48042 3.62083 3.68119 3.82824 3.92863 3.94314 3.96481 4.04605 4.12267 4.14749 4.17779 4.24583 4.24863 4.32645 4.38662 4.44006 4.44838 4.49621 4.61981 4.64614 4.67059 4.70754 4.74682 4.77647 4.79602 4.83698 4.88077 4.88967 5.08047 5.10898 5.17958 5.44679 5.57726 5.65117 5.67638 6.11453 6.20755 6.54725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 S -0.150 6.150 3 C -0.077 4.077 4 C 0.060 3.940 5 O -0.665 6.665 6 S 2.579 3.421 7 O -0.964 6.964 8 O -0.961 6.961 9 C -0.621 4.621 10 H 0.178 0.822 11 C -0.116 4.116 12 C 0.082 3.918 13 H 0.109 0.891 14 O -0.367 6.367 15 C 0.099 3.901 16 C -0.106 4.106 17 C -0.110 4.110 18 C -0.134 4.134 19 C -0.124 4.124 20 C -0.134 4.134 21 C -0.111 4.111 22 C -0.134 4.134 23 C -0.103 4.103 24 C -0.103 4.103 25 C -0.041 4.041 26 C -0.090 4.090 27 O -0.556 6.556 28 Si 0.763 3.237 29 C -0.101 4.101 30 H 0.101 0.899 31 H 0.100 0.900 32 H 0.129 0.871 33 H 0.109 0.891 34 H 0.112 0.888 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.134 0.866 38 H 0.137 0.863 39 H 0.136 0.864 40 H 0.136 0.864 41 H 0.132 0.868 42 H 0.112 0.888 43 H 0.110 0.890 44 H 0.180 0.820 45 H 0.172 0.828 46 H 0.106 0.894 47 H 0.399 0.601 48 H -0.288 1.288 49 H -0.283 1.283 50 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.394 7.944 2.822 8.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.303 4.303 2 S 0.094 5.906 3 C -0.192 4.192 4 C 0.012 3.988 5 O -0.624 6.624 6 S 2.680 3.320 7 O -0.963 6.963 8 O -0.959 6.959 9 C -0.732 4.732 10 H 0.195 0.805 11 C -0.155 4.155 12 C 0.022 3.978 13 H 0.127 0.873 14 O -0.286 6.286 15 C 0.023 3.977 16 C -0.106 4.106 17 C -0.128 4.128 18 C -0.152 4.152 19 C -0.142 4.142 20 C -0.152 4.152 21 C -0.129 4.129 22 C -0.173 4.173 23 C -0.124 4.124 24 C -0.123 4.123 25 C -0.044 4.044 26 C -0.198 4.198 27 O -0.366 6.366 28 Si 0.667 3.333 29 C -0.125 4.125 30 H 0.120 0.880 31 H 0.119 0.881 32 H 0.147 0.853 33 H 0.127 0.873 34 H 0.130 0.870 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.152 0.848 38 H 0.155 0.845 39 H 0.154 0.846 40 H 0.154 0.846 41 H 0.150 0.850 42 H 0.130 0.870 43 H 0.128 0.872 44 H 0.198 0.802 45 H 0.189 0.811 46 H 0.124 0.876 47 H 0.250 0.750 48 H -0.215 1.215 49 H -0.209 1.209 50 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 1.064 6.426 2.164 6.864 hybrid contribution -1.476 0.844 -0.738 1.854 sum -0.412 7.270 1.425 7.420 Atomic orbital electron populations 1.23889 0.90109 1.09164 1.07177 1.86046 1.11584 1.02359 1.90577 1.22086 0.95293 0.98447 1.03395 1.17716 0.83320 0.86912 1.10848 1.85692 1.55612 1.63074 1.57976 1.06015 0.75467 0.77529 0.73037 1.93635 1.45878 1.87207 1.69531 1.93581 1.71762 1.47152 1.83445 1.32134 1.11241 1.20182 1.09598 0.80478 1.23051 0.95319 1.03157 0.93937 1.22831 0.98897 0.81765 0.94281 0.87341 1.87941 1.28291 1.18761 1.93655 1.21533 0.84625 0.89176 1.02348 1.19774 1.02396 0.94644 0.93802 1.21309 0.98694 0.93945 0.98824 1.21452 1.00163 0.95290 0.98246 1.21523 0.98908 1.00962 0.92774 1.21449 1.00190 0.93835 0.99762 1.21312 0.98832 0.95578 0.97210 1.23378 0.89512 1.04859 0.99523 1.21585 1.03186 0.88647 0.98956 1.21187 0.90738 1.00742 0.99679 1.19680 0.94535 0.93431 0.96738 1.25089 0.95314 1.07995 0.91425 1.86529 1.46227 1.60510 1.43349 0.94136 0.81264 0.71474 0.86476 1.21168 0.98725 0.91940 1.00652 0.88026 0.88150 0.85267 0.87294 0.86957 0.90927 0.90861 0.84810 0.84479 0.84563 0.84590 0.85038 0.87010 0.87156 0.80232 0.81104 0.87592 0.74954 1.21520 1.20928 0.82962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.01 9.15 113.37 1.04 1.05 16 2 S -0.15 -1.53 21.24 -56.49 -1.20 -2.73 16 3 C -0.08 -0.67 5.58 22.68 0.13 -0.55 16 4 C 0.06 0.45 4.72 22.60 0.11 0.56 16 5 O -0.66 -6.47 9.43 -62.72 -0.59 -7.07 16 6 S 2.58 22.51 5.09 -56.49 -0.29 22.22 16 7 O -0.96 -12.76 15.70 -118.57 -1.86 -14.63 16 8 O -0.96 -14.31 17.42 -118.57 -2.07 -16.38 16 9 C -0.62 0.51 3.72 31.12 0.12 0.62 16 10 H 0.18 -0.82 6.08 -2.39 -0.01 -0.83 16 11 C -0.12 0.30 7.50 31.12 0.23 0.53 16 12 C 0.08 -0.33 4.37 31.12 0.14 -0.19 16 13 H 0.11 -0.84 7.87 -2.39 -0.02 -0.86 16 14 O -0.37 0.59 10.26 -148.98 -1.53 -0.93 16 15 C 0.10 -0.35 5.90 71.24 0.42 0.07 16 16 C -0.11 0.05 5.51 -19.86 -0.11 -0.06 16 17 C -0.11 0.10 9.70 22.27 0.22 0.32 16 18 C -0.13 0.16 10.05 22.27 0.22 0.38 16 19 C -0.12 0.13 10.05 22.27 0.22 0.35 16 20 C -0.13 0.10 10.05 22.27 0.22 0.32 16 21 C -0.11 0.04 9.70 22.27 0.22 0.25 16 22 C -0.13 0.43 7.48 31.12 0.23 0.67 16 23 C -0.10 -0.02 8.51 22.34 0.19 0.17 16 24 C -0.10 0.18 8.66 22.29 0.19 0.37 16 25 C -0.04 -0.02 5.42 -19.87 -0.11 -0.13 16 26 C -0.09 0.35 2.81 71.24 0.20 0.55 16 27 O -0.56 0.76 12.75 -148.98 -1.90 -1.13 16 28 Si 0.76 -4.23 29.78 68.60 2.04 -2.19 16 29 C -0.10 -0.40 8.93 22.40 0.20 -0.20 16 30 H 0.10 -0.24 7.74 -2.39 -0.02 -0.26 16 31 H 0.10 -0.23 7.76 -2.39 -0.02 -0.24 16 32 H 0.13 -0.40 8.14 -2.39 -0.02 -0.42 16 33 H 0.11 -0.41 8.14 -2.39 -0.02 -0.43 16 34 H 0.11 -0.45 8.10 -2.39 -0.02 -0.47 16 35 H 0.07 -0.42 8.09 -2.39 -0.02 -0.44 16 36 H 0.07 -0.44 8.08 -2.39 -0.02 -0.46 16 37 H 0.13 -0.55 8.06 -2.91 -0.02 -0.57 16 38 H 0.14 -0.65 8.06 -2.91 -0.02 -0.67 16 39 H 0.14 -0.63 8.06 -2.91 -0.02 -0.65 16 40 H 0.14 -0.56 8.06 -2.91 -0.02 -0.58 16 41 H 0.13 -0.40 8.06 -2.91 -0.02 -0.42 16 42 H 0.11 -0.31 7.54 -2.39 -0.02 -0.33 16 43 H 0.11 -0.68 8.14 -2.39 -0.02 -0.70 16 44 H 0.18 -1.21 6.89 -2.91 -0.02 -1.23 16 45 H 0.17 -1.35 4.86 -2.91 -0.01 -1.37 16 46 H 0.11 -0.87 7.96 -2.39 -0.02 -0.89 16 47 H 0.40 -3.74 8.74 -74.06 -0.65 -4.39 16 48 H -0.29 -0.26 7.11 99.48 0.71 0.45 16 49 H -0.28 0.33 7.11 99.48 0.71 1.04 16 50 H 0.15 0.08 5.88 -2.91 -0.02 0.07 16 Total: 0.00 -29.47 433.98 -2.94 -32.41 By element: Atomic # 1 Polarization: -15.03 SS G_CDS: 0.37 Total: -14.66 kcal Atomic # 6 Polarization: 1.01 SS G_CDS: 4.08 Total: 5.09 kcal Atomic # 8 Polarization: -32.19 SS G_CDS: -7.95 Total: -40.14 kcal Atomic # 14 Polarization: -4.23 SS G_CDS: 2.04 Total: -2.19 kcal Atomic # 16 Polarization: 20.98 SS G_CDS: -1.49 Total: 19.49 kcal Total: -29.47 -2.94 -32.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_13446746_15608174.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.252 kcal (2) G-P(sol) polarization free energy of solvation -29.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds