Wall clock time and date at job start Fri Mar 5 2021 23:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45194 * 109.47456 * 2 1 4 4 C 1.34235 * 117.00489 * 180.02562 * 3 2 1 5 5 O 1.20828 * 119.99511 * 359.97438 * 4 3 2 6 6 C 1.50689 * 120.00223 * 180.02562 * 4 3 2 7 7 H 1.09002 * 109.47683 * 59.99621 * 6 4 3 8 8 C 1.52999 * 109.47395 * 179.97438 * 6 4 3 9 9 C 1.52997 * 109.47592 * 179.97438 * 8 6 4 10 10 C 1.52997 * 109.47232 * 300.00195 * 9 8 6 11 11 F 1.39897 * 109.47422 * 179.97438 * 10 9 8 12 12 C 1.53006 * 109.47127 * 300.00122 * 10 9 8 13 13 S 1.81400 * 109.47145 * 180.02562 * 12 10 9 14 14 O 1.42109 * 110.54012 * 291.61993 * 13 12 10 15 15 O 1.42095 * 110.54467 * 68.37106 * 13 12 10 16 16 O 1.52198 * 104.44877 * 179.97438 * 13 12 10 17 17 C 1.36006 * 114.00405 * 74.99630 * 16 13 12 18 18 C 1.39368 * 120.07955 * 89.99819 * 17 16 13 19 19 S 1.76198 * 120.09727 * 359.97438 * 18 17 16 20 20 C 1.81407 * 103.00070 * 179.97438 * 19 18 17 21 21 C 1.38795 * 119.80916 * 180.02562 * 18 17 16 22 22 C 1.38203 * 119.97259 * 0.02562 * 21 18 17 23 23 C 1.50706 * 119.91732 * 180.02562 * 22 21 18 24 24 O 1.42901 * 109.47176 * 64.99646 * 23 22 21 25 25 Si 1.86298 * 109.47009 * 184.99977 * 23 22 21 26 26 C 1.38264 * 120.16902 * 0.02562 * 22 21 18 27 27 C 1.38312 * 120.18615 * 359.72133 * 26 22 21 28 28 C 1.52999 * 109.47317 * 59.99633 * 10 9 8 29 29 C 1.52997 * 109.47269 * 300.00344 * 28 10 9 30 30 H 1.09002 * 109.47319 * 300.00114 * 1 2 3 31 31 H 1.08999 * 109.46933 * 59.99807 * 1 2 3 32 32 H 1.08996 * 109.47086 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47319 * 239.99886 * 2 1 3 34 34 H 1.09004 * 109.47369 * 120.00047 * 2 1 3 35 35 H 1.09002 * 109.46719 * 59.99946 * 8 6 4 36 36 H 1.09000 * 109.47160 * 300.00226 * 8 6 4 37 37 H 1.09001 * 109.47375 * 180.02562 * 9 8 6 38 38 H 1.09002 * 109.47045 * 60.00253 * 9 8 6 39 39 H 1.09001 * 109.47002 * 299.99574 * 12 10 9 40 40 H 1.08993 * 109.46955 * 60.00011 * 12 10 9 41 41 H 1.09001 * 109.46845 * 300.00415 * 20 19 18 42 42 H 1.08998 * 109.47229 * 60.00156 * 20 19 18 43 43 H 1.08999 * 109.47346 * 180.02562 * 20 19 18 44 44 H 1.08000 * 120.01352 * 180.02562 * 21 18 17 45 45 H 1.09004 * 109.46446 * 304.99857 * 23 22 21 46 46 H 0.96699 * 113.99756 * 60.00128 * 24 23 22 47 47 H 1.48497 * 110.00131 * 58.68132 * 25 23 22 48 48 H 1.48507 * 109.99607 * 179.97438 * 25 23 22 49 49 H 1.07997 * 119.91132 * 180.02562 * 26 22 21 50 50 H 1.08001 * 119.98563 * 180.28040 * 27 26 22 51 51 H 1.09002 * 109.46716 * 60.00091 * 28 10 9 52 52 H 1.09000 * 109.47486 * 180.02562 * 28 10 9 53 53 H 1.09002 * 109.47497 * 299.99829 * 29 28 10 54 54 H 1.09001 * 109.47375 * 179.97438 * 29 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0808 0.5865 -0.0005 6 6 3.9208 2.9373 0.0000 7 1 3.5853 3.4690 0.8904 8 6 5.4487 2.8572 -0.0001 9 6 6.0335 4.2710 -0.0002 10 6 5.5619 5.0180 -1.2494 11 9 6.0962 6.3109 -1.2492 12 6 6.0332 4.2710 -2.4987 13 16 5.4747 5.1570 -3.9798 14 8 4.0612 5.0792 -4.1040 15 8 6.1537 6.3991 -4.1036 16 8 6.0003 4.3251 -5.1408 17 6 5.3075 3.1746 -5.3554 18 6 4.2136 3.1687 -6.2189 19 16 3.7240 4.6516 -7.0349 20 6 2.2921 4.1240 -8.0159 21 6 3.5102 1.9915 -6.4334 22 6 3.8954 0.8302 -5.7908 23 6 3.1311 -0.4474 -6.0251 24 8 3.2795 -0.8481 -7.3887 25 14 3.7969 -1.7827 -4.9095 26 6 4.9802 0.8374 -4.9336 27 6 5.6891 2.0055 -4.7189 28 6 4.0340 5.0981 -1.2493 29 6 3.4491 3.6843 -1.2492 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 5.7845 2.3255 -0.8904 36 1 5.7847 2.3247 0.8896 37 1 7.1220 4.2140 -0.0008 38 1 5.6977 4.8032 0.8898 39 1 7.1217 4.2139 -2.4989 40 1 5.6165 3.2638 -2.4986 41 1 2.5970 3.3433 -8.7128 42 1 1.5195 3.7366 -7.3517 43 1 1.8998 4.9748 -8.5728 44 1 2.6622 1.9831 -7.1022 45 1 2.0756 -0.2845 -5.8070 46 1 4.1953 -1.0107 -7.6534 47 1 3.6774 -1.3646 -3.4896 48 1 3.0510 -3.0477 -5.1304 49 1 5.2778 -0.0726 -4.4339 50 1 6.5387 2.0064 -4.0521 51 1 3.6982 5.6302 -0.3592 52 1 3.6979 5.6299 -2.1395 53 1 3.7849 3.1521 -2.1392 54 1 2.3606 3.7414 -1.2487 There are 78 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 78 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_40_13446746_16464696.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 5 2021 23:17:12 Heat of formation + Delta-G solvation = -229.603698 kcal Electronic energy + Delta-G solvation = -44725.587869 eV Core-core repulsion = 39184.383978 eV Total energy + Delta-G solvation = -5541.203891 eV No. of doubly occupied orbitals = 78 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 449.120 amu Computer time = 1.75 seconds Orbital eigenvalues (eV) -49.09469 -42.36978 -41.87560 -39.98016 -39.64648 -38.48507 -37.70095 -37.46599 -37.34633 -33.60931 -32.86732 -32.52548 -32.29832 -32.10191 -29.95669 -29.25463 -27.00654 -25.44313 -24.63385 -24.22407 -23.74593 -23.58871 -22.01308 -21.81071 -20.55611 -19.69630 -19.26017 -18.90230 -18.79618 -18.50578 -17.94809 -17.78133 -17.70357 -17.42131 -17.13361 -16.80602 -16.54894 -16.33700 -16.06734 -15.78841 -15.45856 -15.41767 -15.31709 -15.07009 -14.96684 -14.89197 -14.66819 -14.50323 -14.45293 -14.29672 -14.10623 -13.98996 -13.81183 -13.74272 -13.62480 -13.55319 -13.45929 -13.34924 -13.24892 -13.09367 -12.93181 -12.80945 -12.73312 -12.65181 -12.54314 -12.28503 -12.24521 -12.00819 -11.92474 -11.64701 -11.54181 -11.51460 -11.40879 -11.15702 -11.05161 -10.55368 -10.20303 -8.67275 -5.04334 -1.31789 -0.29996 -0.15112 0.21809 0.86741 1.06038 1.16886 1.28650 1.57953 1.60998 1.94847 2.08416 2.31213 2.68300 2.81076 3.08433 3.10265 3.31326 3.36174 3.37876 3.44328 3.50735 3.64112 3.65956 3.78467 3.88327 3.91442 3.93592 3.98439 3.98894 4.02733 4.13526 4.15509 4.16874 4.19873 4.25496 4.26750 4.30762 4.42608 4.53670 4.59880 4.63183 4.65935 4.74049 4.75269 4.79406 4.83876 4.84274 4.87897 4.92996 4.98842 5.04157 5.08647 5.09788 5.20880 5.41067 5.42343 6.62054 6.70695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.360 6.360 4 C 0.465 3.535 5 O -0.530 6.530 6 C -0.083 4.083 7 H 0.138 0.862 8 C -0.106 4.106 9 C -0.122 4.122 10 C 0.130 3.870 11 F -0.210 7.210 12 C -0.681 4.681 13 S 2.578 3.422 14 O -0.940 6.940 15 O -0.961 6.961 16 O -0.662 6.662 17 C 0.052 3.948 18 C -0.069 4.069 19 S -0.141 6.141 20 C -0.138 4.138 21 C -0.099 4.099 22 C -0.075 4.075 23 C -0.073 4.073 24 O -0.549 6.549 25 Si 0.767 3.233 26 C -0.104 4.104 27 C -0.101 4.101 28 C -0.173 4.173 29 C -0.104 4.104 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.094 0.906 33 H 0.064 0.936 34 H 0.070 0.930 35 H 0.083 0.917 36 H 0.092 0.908 37 H 0.102 0.898 38 H 0.102 0.898 39 H 0.182 0.818 40 H 0.178 0.822 41 H 0.103 0.897 42 H 0.099 0.901 43 H 0.126 0.874 44 H 0.152 0.848 45 H 0.118 0.882 46 H 0.398 0.602 47 H -0.279 1.279 48 H -0.295 1.295 49 H 0.172 0.828 50 H 0.183 0.817 51 H 0.116 0.884 52 H 0.083 0.917 53 H 0.070 0.930 54 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.162 -7.614 2.131 7.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.019 4.019 3 O -0.277 6.277 4 C 0.309 3.691 5 O -0.419 6.419 6 C -0.102 4.102 7 H 0.155 0.845 8 C -0.143 4.143 9 C -0.160 4.160 10 C 0.111 3.889 11 F -0.190 7.190 12 C -0.809 4.809 13 S 2.676 3.324 14 O -0.938 6.938 15 O -0.960 6.960 16 O -0.621 6.621 17 C 0.004 3.996 18 C -0.185 4.185 19 S 0.104 5.896 20 C -0.306 4.306 21 C -0.123 4.123 22 C -0.078 4.078 23 C -0.183 4.183 24 O -0.357 6.357 25 Si 0.672 3.328 26 C -0.124 4.124 27 C -0.122 4.122 28 C -0.211 4.211 29 C -0.142 4.142 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.113 0.887 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.102 0.898 36 H 0.110 0.890 37 H 0.120 0.880 38 H 0.120 0.880 39 H 0.200 0.800 40 H 0.195 0.805 41 H 0.122 0.878 42 H 0.118 0.882 43 H 0.145 0.855 44 H 0.169 0.831 45 H 0.135 0.865 46 H 0.248 0.752 47 H -0.205 1.205 48 H -0.223 1.223 49 H 0.189 0.811 50 H 0.200 0.800 51 H 0.135 0.865 52 H 0.102 0.898 53 H 0.089 0.911 54 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -1.525 -6.555 2.159 7.068 hybrid contribution -0.553 -0.670 0.031 0.869 sum -2.078 -7.225 2.189 7.830 Atomic orbital electron populations 1.21835 0.90945 1.04173 1.03793 1.23216 0.96779 0.79491 1.02380 1.86525 1.24473 1.33242 1.83470 1.24107 0.80580 0.93040 0.71329 1.90670 1.60879 1.44035 1.46345 1.21331 0.97027 0.88792 1.03040 0.84474 1.21534 0.91096 0.96340 1.05353 1.22070 1.03337 0.95211 0.95396 1.20742 0.94449 0.78187 0.95555 1.92970 1.88049 1.40495 1.97533 1.31611 1.16929 1.16343 1.16054 1.06097 0.74772 0.75209 0.76324 1.93676 1.30715 1.85892 1.83541 1.93616 1.76149 1.41186 1.85020 1.85759 1.67742 1.42071 1.66567 1.17779 0.93995 0.83446 1.04404 1.22113 0.97551 0.98786 1.00012 1.86165 1.38648 1.12455 1.52322 1.23903 0.96760 1.07725 1.02207 1.21157 1.00343 0.89831 1.01018 1.20644 0.95928 0.95749 0.95489 1.25238 1.03424 0.97968 0.91665 1.86506 1.34551 1.89521 1.25155 0.93820 0.88672 0.74667 0.75653 1.21228 0.94442 0.98404 0.98313 1.21626 1.01027 0.89695 0.99811 1.22637 0.91785 0.99679 1.06955 1.21478 1.03055 0.93495 0.96149 0.91086 0.91385 0.88722 0.91799 0.91127 0.89841 0.88950 0.87957 0.87951 0.80041 0.80463 0.87817 0.88245 0.85523 0.83058 0.86492 0.75157 1.20533 1.22310 0.81098 0.79976 0.86517 0.89836 0.91125 0.88378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.67 10.29 71.98 0.74 1.41 16 2 C 0.05 -0.03 6.19 71.98 0.45 0.41 16 3 O -0.36 -0.44 10.12 -51.47 -0.52 -0.96 16 4 C 0.47 0.42 7.25 71.23 0.52 0.93 16 5 O -0.53 -3.02 15.73 21.96 0.35 -2.67 16 6 C -0.08 0.40 2.63 -11.54 -0.03 0.37 16 7 H 0.14 -1.18 8.14 -2.39 -0.02 -1.20 16 8 C -0.11 0.68 4.22 30.59 0.13 0.81 16 9 C -0.12 0.79 5.19 30.59 0.16 0.95 16 10 C 0.13 -0.13 1.10 -10.79 -0.01 -0.15 16 11 F -0.21 -1.25 16.08 44.97 0.72 -0.52 16 12 C -0.68 1.62 4.06 71.98 0.29 1.92 16 13 S 2.58 20.16 4.46 -56.49 -0.25 19.91 16 14 O -0.94 -8.73 12.67 -118.57 -1.50 -10.23 16 15 O -0.96 -16.47 17.60 -118.57 -2.09 -18.55 16 16 O -0.66 -4.79 9.44 -62.72 -0.59 -5.39 16 17 C 0.05 0.18 4.80 22.60 0.11 0.29 16 18 C -0.07 -0.31 5.49 22.68 0.12 -0.19 16 19 S -0.14 -1.03 20.62 -56.49 -1.17 -2.20 16 20 C -0.14 0.30 9.15 113.37 1.04 1.34 16 21 C -0.10 0.04 9.00 22.39 0.20 0.24 16 22 C -0.07 0.30 5.35 -19.86 -0.11 0.19 16 23 C -0.07 0.39 2.80 71.24 0.20 0.59 16 24 O -0.55 2.57 12.83 -148.98 -1.91 0.66 16 25 Si 0.77 -4.79 29.79 68.60 2.04 -2.75 16 26 C -0.10 0.67 8.66 22.29 0.19 0.86 16 27 C -0.10 0.44 8.46 22.34 0.19 0.63 16 28 C -0.17 0.26 4.71 30.59 0.14 0.41 16 29 C -0.10 0.36 4.86 30.60 0.15 0.51 16 30 H 0.07 -0.32 8.14 -2.39 -0.02 -0.34 16 31 H 0.07 -0.28 8.14 -2.39 -0.02 -0.30 16 32 H 0.09 -0.67 8.14 -2.39 -0.02 -0.69 16 33 H 0.06 0.01 8.13 -2.39 -0.02 -0.01 16 34 H 0.07 -0.04 8.13 -2.39 -0.02 -0.06 16 35 H 0.08 -0.61 6.38 -2.39 -0.02 -0.63 16 36 H 0.09 -0.59 8.10 -2.39 -0.02 -0.61 16 37 H 0.10 -0.85 8.14 -2.39 -0.02 -0.87 16 38 H 0.10 -0.86 8.14 -2.39 -0.02 -0.88 16 39 H 0.18 -1.44 8.14 -2.39 -0.02 -1.46 16 40 H 0.18 -1.36 3.29 -2.39 -0.01 -1.36 16 41 H 0.10 -0.51 7.75 -2.39 -0.02 -0.53 16 42 H 0.10 -0.40 7.75 -2.39 -0.02 -0.41 16 43 H 0.13 -0.57 8.14 -2.39 -0.02 -0.59 16 44 H 0.15 -0.42 5.88 -2.91 -0.02 -0.44 16 45 H 0.12 -0.57 7.96 -2.38 -0.02 -0.59 16 46 H 0.40 -4.97 8.70 -74.06 -0.64 -5.61 16 47 H -0.28 0.38 7.11 99.48 0.71 1.09 16 48 H -0.30 -0.50 7.11 99.48 0.71 0.21 16 49 H 0.17 -2.07 4.89 -2.91 -0.01 -2.09 16 50 H 0.18 -2.15 7.51 -2.91 -0.02 -2.17 16 51 H 0.12 -0.59 8.14 -2.39 -0.02 -0.61 16 52 H 0.08 0.21 5.46 -2.39 -0.01 0.19 16 53 H 0.07 -0.24 6.43 -2.39 -0.02 -0.25 16 54 H 0.10 -0.35 8.11 -2.39 -0.02 -0.37 16 Total: 0.00 -31.68 445.54 -0.08 -31.76 By element: Atomic # 1 Polarization: -20.94 SS G_CDS: 0.36 Total: -20.59 kcal Atomic # 6 Polarization: 7.05 SS G_CDS: 4.48 Total: 11.53 kcal Atomic # 8 Polarization: -30.88 SS G_CDS: -6.27 Total: -37.15 kcal Atomic # 9 Polarization: -1.25 SS G_CDS: 0.72 Total: -0.52 kcal Atomic # 14 Polarization: -4.79 SS G_CDS: 2.04 Total: -2.75 kcal Atomic # 16 Polarization: 19.13 SS G_CDS: -1.42 Total: 17.72 kcal Total: -31.68 -0.08 -31.76 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_13446746_16464696.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -197.846 kcal (2) G-P(sol) polarization free energy of solvation -31.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -229.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -229.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.75 seconds