Wall clock time and date at job start Fri Mar 5 2021 23:17:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45198 * 109.46982 * 2 1 4 4 C 1.34230 * 116.99776 * 179.97438 * 3 2 1 5 5 O 1.20831 * 120.00246 * 0.02562 * 4 3 2 6 6 C 1.50706 * 120.00139 * 179.97438 * 4 3 2 7 7 H 1.09000 * 109.46974 * 300.00495 * 6 4 3 8 8 C 1.52997 * 109.46909 * 60.00296 * 6 4 3 9 9 C 1.52996 * 109.47165 * 180.02562 * 8 6 4 10 10 C 1.53002 * 109.46972 * 300.00293 * 9 8 6 11 11 F 1.39911 * 109.47020 * 299.99873 * 10 9 8 12 12 C 1.52996 * 109.47346 * 179.97438 * 10 9 8 13 13 S 1.81404 * 109.47313 * 59.99523 * 12 10 9 14 14 O 1.42093 * 110.54250 * 291.63072 * 13 12 10 15 15 O 1.42105 * 110.53804 * 68.37624 * 13 12 10 16 16 O 1.52191 * 104.45303 * 179.97438 * 13 12 10 17 17 C 1.36012 * 113.99636 * 75.00179 * 16 13 12 18 18 C 1.39369 * 120.08194 * 269.72320 * 17 16 13 19 19 S 1.76195 * 120.09598 * 0.02562 * 18 17 16 20 20 C 1.81398 * 103.00096 * 179.97438 * 19 18 17 21 21 C 1.38794 * 119.80913 * 179.70000 * 18 17 16 22 22 C 1.38201 * 119.97378 * 0.57673 * 21 18 17 23 23 C 1.50701 * 119.92086 * 179.72290 * 22 21 18 24 24 O 1.42897 * 109.47044 * 64.97480 * 23 22 21 25 25 Si 1.86293 * 109.47402 * 184.98091 * 23 22 21 26 26 C 1.38274 * 120.16648 * 359.70003 * 22 21 18 27 27 C 1.38296 * 120.18808 * 0.02562 * 26 22 21 28 28 C 1.52997 * 109.47415 * 59.99860 * 10 9 8 29 29 C 1.52999 * 109.46957 * 180.02562 * 6 4 3 30 30 H 1.09003 * 109.47564 * 300.00666 * 1 2 3 31 31 H 1.09011 * 109.46967 * 60.00126 * 1 2 3 32 32 H 1.08999 * 109.47198 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.47422 * 239.99964 * 2 1 3 34 34 H 1.08998 * 109.46694 * 119.99955 * 2 1 3 35 35 H 1.09000 * 109.47140 * 60.00301 * 8 6 4 36 36 H 1.09001 * 109.47375 * 300.00283 * 8 6 4 37 37 H 1.08992 * 109.47534 * 180.02562 * 9 8 6 38 38 H 1.08996 * 109.47134 * 59.99508 * 9 8 6 39 39 H 1.09001 * 109.47367 * 179.97438 * 12 10 9 40 40 H 1.09004 * 109.47368 * 299.99812 * 12 10 9 41 41 H 1.09002 * 109.47116 * 179.97438 * 20 19 18 42 42 H 1.09000 * 109.47269 * 299.99549 * 20 19 18 43 43 H 1.08998 * 109.47442 * 60.00065 * 20 19 18 44 44 H 1.07999 * 120.01229 * 180.30268 * 21 18 17 45 45 H 1.09003 * 109.46674 * 304.97839 * 23 22 21 46 46 H 0.96702 * 114.00049 * 180.02562 * 24 23 22 47 47 H 1.48502 * 109.99830 * 299.99767 * 25 23 22 48 48 H 1.48494 * 110.00134 * 61.31543 * 25 23 22 49 49 H 1.08001 * 119.90580 * 179.97438 * 26 22 21 50 50 H 1.07999 * 119.98961 * 180.02562 * 27 26 22 51 51 H 1.09001 * 109.46922 * 180.02562 * 28 10 9 52 52 H 1.09000 * 109.47140 * 59.99976 * 28 10 9 53 53 H 1.08993 * 109.47839 * 60.00178 * 29 6 4 54 54 H 1.09000 * 109.47160 * 299.99740 * 29 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0808 0.5866 0.0005 6 6 3.9208 2.9374 0.0000 7 1 3.5852 3.4691 -0.8904 8 6 3.4487 3.6850 1.2486 9 6 4.0330 5.0990 1.2478 10 6 5.5609 5.0195 1.2481 11 9 5.9921 4.3373 2.3910 12 6 6.1453 6.4334 1.2466 13 16 5.5856 7.3206 2.7266 14 8 4.1898 7.5769 2.6563 15 8 6.1696 6.7600 3.8946 16 8 6.2268 8.6960 2.6102 17 6 5.6370 9.5051 1.6897 18 6 6.0852 9.5047 0.3700 19 16 7.4168 8.4557 -0.1105 20 6 7.6074 8.8215 -1.8770 21 6 5.4751 10.3281 -0.5661 22 6 4.4343 11.1537 -0.1853 23 6 3.7769 12.0518 -1.2013 24 8 3.1226 11.2538 -2.1898 25 14 2.5246 13.1383 -0.3518 26 6 3.9942 11.1575 1.1256 27 6 4.5935 10.3357 2.0626 28 6 6.0330 4.2718 -0.0005 29 6 5.4487 2.8572 0.0001 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8901 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 3.7843 3.1534 2.1390 36 1 2.3602 3.7421 1.2481 37 1 3.6971 5.6315 2.1374 38 1 3.6971 5.6304 0.3573 39 1 7.2338 6.3767 1.2473 40 1 5.8094 6.9645 0.3560 41 1 8.4181 8.2193 -2.2873 42 1 6.6798 8.5866 -2.3989 43 1 7.8393 9.8787 -2.0062 44 1 5.8165 10.3268 -1.5907 45 1 4.5333 12.6743 -1.6792 46 1 2.6771 11.7669 -2.8778 47 1 1.4877 12.3014 0.3039 48 1 3.1973 13.9961 0.6566 49 1 3.1808 11.8047 1.4186 50 1 4.2469 10.3409 3.0855 51 1 7.1215 4.2148 0.0000 52 1 5.6971 4.8032 -0.8909 53 1 5.7847 2.3248 -0.8895 54 1 5.7845 2.3255 0.8904 There are 78 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 78 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_40_13446746_16464698.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 5 2021 23:17:18 Heat of formation + Delta-G solvation = -230.959551 kcal Electronic energy + Delta-G solvation = -43115.574304 eV Core-core repulsion = 37574.311619 eV Total energy + Delta-G solvation = -5541.262685 eV No. of doubly occupied orbitals = 78 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 449.120 amu Computer time = 1.73 seconds Orbital eigenvalues (eV) -49.11985 -42.45916 -41.79345 -39.96772 -39.14050 -38.58038 -37.68907 -37.51940 -37.37519 -34.29938 -32.99674 -32.63452 -32.48891 -32.09203 -29.90401 -29.11513 -27.00214 -25.24899 -24.69594 -24.23100 -23.68669 -23.43874 -22.06323 -21.73877 -20.88936 -19.91113 -19.28392 -18.92801 -18.77390 -18.42401 -18.14572 -17.85637 -17.71614 -17.37475 -17.21848 -17.01611 -16.75487 -16.33151 -16.21545 -15.61353 -15.55339 -15.35174 -15.28204 -15.07260 -14.93657 -14.87562 -14.58753 -14.51926 -14.33833 -14.13804 -14.12119 -14.00530 -13.85087 -13.73702 -13.59021 -13.55059 -13.46453 -13.44502 -13.22267 -13.19224 -13.17730 -12.93067 -12.75187 -12.62863 -12.52618 -12.40602 -12.21553 -12.04366 -11.97592 -11.75317 -11.57304 -11.49603 -11.33246 -11.17889 -11.04153 -10.44408 -10.13712 -8.68152 -4.93219 -1.38381 -0.46924 -0.20658 0.08681 0.73756 1.05710 1.13411 1.30828 1.58964 1.66712 1.97223 1.99823 2.22671 2.60056 2.79174 3.08198 3.18166 3.20170 3.28554 3.36380 3.47555 3.52324 3.62832 3.68622 3.77748 3.82952 3.94734 3.98025 4.00172 4.02242 4.02503 4.14330 4.14933 4.25610 4.28335 4.29475 4.29723 4.34459 4.44592 4.53165 4.53818 4.57182 4.61490 4.73684 4.77560 4.78741 4.87322 4.88345 4.89915 4.92536 4.96470 4.99369 5.07469 5.11609 5.24068 5.30861 5.41608 6.62417 6.92292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 O -0.359 6.359 4 C 0.465 3.535 5 O -0.539 6.539 6 C -0.076 4.076 7 H 0.148 0.852 8 C -0.110 4.110 9 C -0.172 4.172 10 C 0.126 3.874 11 F -0.214 7.214 12 C -0.655 4.655 13 S 2.575 3.425 14 O -0.959 6.959 15 O -0.962 6.962 16 O -0.662 6.662 17 C 0.055 3.945 18 C -0.102 4.102 19 S -0.112 6.112 20 C -0.150 4.150 21 C -0.082 4.082 22 C -0.041 4.041 23 C -0.072 4.072 24 O -0.556 6.556 25 Si 0.759 3.241 26 C -0.125 4.125 27 C -0.078 4.078 28 C -0.119 4.119 29 C -0.109 4.109 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.095 0.905 33 H 0.070 0.930 34 H 0.063 0.937 35 H 0.058 0.942 36 H 0.100 0.900 37 H 0.078 0.922 38 H 0.132 0.868 39 H 0.171 0.829 40 H 0.195 0.805 41 H 0.133 0.867 42 H 0.112 0.888 43 H 0.101 0.899 44 H 0.178 0.822 45 H 0.114 0.886 46 H 0.409 0.591 47 H -0.294 1.294 48 H -0.289 1.289 49 H 0.138 0.862 50 H 0.148 0.852 51 H 0.098 0.902 52 H 0.127 0.873 53 H 0.090 0.910 54 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.679 7.811 -14.289 16.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 O -0.275 6.275 4 C 0.309 3.691 5 O -0.429 6.429 6 C -0.095 4.095 7 H 0.166 0.834 8 C -0.147 4.147 9 C -0.210 4.210 10 C 0.106 3.894 11 F -0.195 7.195 12 C -0.786 4.786 13 S 2.675 3.325 14 O -0.958 6.958 15 O -0.960 6.960 16 O -0.621 6.621 17 C 0.007 3.993 18 C -0.217 4.217 19 S 0.132 5.868 20 C -0.318 4.318 21 C -0.105 4.105 22 C -0.044 4.044 23 C -0.183 4.183 24 O -0.367 6.367 25 Si 0.666 3.334 26 C -0.145 4.145 27 C -0.099 4.099 28 C -0.157 4.157 29 C -0.147 4.147 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.114 0.886 33 H 0.088 0.912 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.119 0.881 37 H 0.097 0.903 38 H 0.150 0.850 39 H 0.189 0.811 40 H 0.212 0.788 41 H 0.151 0.849 42 H 0.130 0.870 43 H 0.120 0.880 44 H 0.195 0.805 45 H 0.131 0.869 46 H 0.261 0.739 47 H -0.222 1.222 48 H -0.216 1.216 49 H 0.155 0.845 50 H 0.165 0.835 51 H 0.117 0.883 52 H 0.145 0.855 53 H 0.109 0.891 54 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.000 6.589 -11.813 13.674 hybrid contribution 0.237 -0.213 0.237 0.398 sum -1.762 6.376 -11.576 13.333 Atomic orbital electron populations 1.21825 0.90617 1.04250 1.03791 1.23248 0.96969 0.79409 1.02398 1.86513 1.24168 1.33402 1.83452 1.24226 0.80610 0.93184 0.71069 1.90674 1.61142 1.44409 1.46661 1.21279 0.96516 0.88607 1.03088 0.83402 1.21462 1.02817 0.94085 0.96342 1.22727 0.91811 0.99196 1.07244 1.20900 0.95155 0.87751 0.85548 1.92943 1.91428 1.81751 1.53366 1.31960 1.15268 1.08496 1.22884 1.06094 0.74389 0.74344 0.77698 1.93617 1.32870 1.81650 1.87647 1.93617 1.78740 1.76938 1.46688 1.85758 1.70286 1.43432 1.62605 1.17646 0.97639 0.98586 0.85407 1.22211 1.01555 1.03803 0.94098 1.86154 1.38184 1.47175 1.15249 1.24081 1.08843 1.07943 0.90903 1.21289 0.95294 0.94134 0.99831 1.19900 0.94969 0.96104 0.93474 1.24680 1.03017 0.96745 0.93871 1.86423 1.72935 1.36842 1.40473 0.94336 0.78023 0.78764 0.82282 1.21044 1.00333 0.99746 0.93373 1.21301 0.93153 0.93637 1.01855 1.22132 1.03100 0.94445 0.96008 1.21479 0.91751 0.97392 1.04039 0.91428 0.90946 0.88609 0.91152 0.91857 0.92306 0.88102 0.90348 0.84959 0.81109 0.78839 0.84865 0.86975 0.88007 0.80484 0.86868 0.73918 1.22210 1.21595 0.84453 0.83451 0.88337 0.85461 0.89099 0.92560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.38 10.29 71.98 0.74 1.12 16 2 C 0.05 0.12 6.19 71.98 0.45 0.57 16 3 O -0.36 -1.62 10.12 -51.41 -0.52 -2.14 16 4 C 0.46 2.68 7.26 71.24 0.52 3.20 16 5 O -0.54 -6.65 15.73 21.95 0.35 -6.31 16 6 C -0.08 0.06 2.63 -11.54 -0.03 0.03 16 7 H 0.15 -1.12 8.14 -2.39 -0.02 -1.14 16 8 C -0.11 -0.10 5.01 30.59 0.15 0.05 16 9 C -0.17 -0.08 4.52 30.59 0.14 0.05 16 10 C 0.13 0.17 0.88 -10.80 -0.01 0.16 16 11 F -0.21 -2.05 15.05 44.97 0.68 -1.38 16 12 C -0.66 -0.14 3.22 71.98 0.23 0.10 16 13 S 2.57 25.74 4.51 -56.49 -0.25 25.49 16 14 O -0.96 -11.06 13.89 -118.57 -1.65 -12.71 16 15 O -0.96 -18.16 17.61 -118.57 -2.09 -20.25 16 16 O -0.66 -6.25 9.53 -62.78 -0.60 -6.85 16 17 C 0.06 0.34 4.80 22.60 0.11 0.45 16 18 C -0.10 0.00 5.47 22.68 0.12 0.12 16 19 S -0.11 0.50 16.91 -56.49 -0.96 -0.45 16 20 C -0.15 1.95 9.15 113.37 1.04 2.99 16 21 C -0.08 0.30 9.00 22.39 0.20 0.50 16 22 C -0.04 0.06 5.38 -19.86 -0.11 -0.04 16 23 C -0.07 0.57 2.79 71.24 0.20 0.77 16 24 O -0.56 4.83 12.81 -148.98 -1.91 2.92 16 25 Si 0.76 -4.92 29.84 68.60 2.05 -2.88 16 26 C -0.12 -0.32 8.66 22.29 0.19 -0.13 16 27 C -0.08 -0.46 9.04 22.34 0.20 -0.26 16 28 C -0.12 0.56 5.00 30.61 0.15 0.71 16 29 C -0.11 0.03 4.38 30.61 0.13 0.16 16 30 H 0.07 -0.14 8.14 -2.39 -0.02 -0.16 16 31 H 0.07 -0.23 8.14 -2.38 -0.02 -0.25 16 32 H 0.10 -0.52 8.14 -2.39 -0.02 -0.54 16 33 H 0.07 0.15 8.13 -2.39 -0.02 0.13 16 34 H 0.06 0.23 8.13 -2.39 -0.02 0.21 16 35 H 0.06 0.30 7.80 -2.39 -0.02 0.28 16 36 H 0.10 -0.10 8.11 -2.39 -0.02 -0.12 16 37 H 0.08 0.38 5.46 -2.39 -0.01 0.37 16 38 H 0.13 -0.82 8.14 -2.39 -0.02 -0.84 16 39 H 0.17 -0.43 7.11 -2.39 -0.02 -0.45 16 40 H 0.19 -1.15 5.48 -9.96 -0.05 -1.20 16 41 H 0.13 -2.04 8.14 -2.39 -0.02 -2.06 16 42 H 0.11 -1.78 7.74 -2.39 -0.02 -1.79 16 43 H 0.10 -1.44 7.76 -2.39 -0.02 -1.46 16 44 H 0.18 -1.83 5.88 -2.91 -0.02 -1.85 16 45 H 0.11 -1.53 7.96 -2.39 -0.02 -1.55 16 46 H 0.41 -7.60 8.74 -74.06 -0.65 -8.24 16 47 H -0.29 -0.51 7.05 99.48 0.70 0.19 16 48 H -0.29 0.09 7.11 99.48 0.71 0.80 16 49 H 0.14 0.18 4.85 -2.91 -0.01 0.16 16 50 H 0.15 0.74 8.06 -2.91 -0.02 0.71 16 51 H 0.10 -0.59 8.14 -2.39 -0.02 -0.61 16 52 H 0.13 -1.50 8.14 -2.39 -0.02 -1.52 16 53 H 0.09 -0.12 8.10 -2.39 -0.02 -0.14 16 54 H 0.06 0.31 7.76 -2.39 -0.02 0.29 16 Total: 0.00 -34.59 446.03 -0.18 -34.77 By element: Atomic # 1 Polarization: -21.06 SS G_CDS: 0.29 Total: -20.77 kcal Atomic # 6 Polarization: 6.12 SS G_CDS: 4.43 Total: 10.55 kcal Atomic # 8 Polarization: -38.91 SS G_CDS: -6.42 Total: -45.33 kcal Atomic # 9 Polarization: -2.05 SS G_CDS: 0.68 Total: -1.38 kcal Atomic # 14 Polarization: -4.92 SS G_CDS: 2.05 Total: -2.88 kcal Atomic # 16 Polarization: 26.25 SS G_CDS: -1.21 Total: 25.04 kcal Total: -34.59 -0.18 -34.77 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_13446746_16464698.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -196.193 kcal (2) G-P(sol) polarization free energy of solvation -34.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -230.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -230.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds