Wall clock time and date at job start Fri Mar 5 2021 23:19:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45201 * 109.47158 * 2 1 4 4 C 1.34232 * 116.99839 * 180.02562 * 3 2 1 5 5 O 1.20823 * 120.00130 * 359.97438 * 4 3 2 6 6 C 1.50702 * 119.99888 * 180.02562 * 4 3 2 7 7 H 1.09000 * 112.85029 * 48.79962 * 6 4 3 8 8 C 1.53780 * 113.61447 * 179.97438 * 6 4 3 9 9 C 1.53771 * 87.08235 * 140.06335 * 8 6 4 10 10 F 1.39899 * 113.61683 * 89.19942 * 9 8 6 11 11 C 1.52997 * 113.61523 * 220.01693 * 9 8 6 12 12 S 1.81401 * 109.47198 * 179.97438 * 11 9 8 13 13 O 1.42100 * 110.54422 * 68.37716 * 12 11 9 14 14 O 1.42103 * 110.54451 * 291.62308 * 12 11 9 15 15 O 1.52200 * 104.44926 * 180.02562 * 12 11 9 16 16 C 1.36002 * 114.00444 * 75.00362 * 15 12 11 17 17 C 1.39368 * 120.08518 * 89.99711 * 16 15 12 18 18 S 1.76195 * 120.09698 * 0.02562 * 17 16 15 19 19 C 1.81393 * 103.00180 * 180.02562 * 18 17 16 20 20 C 1.38797 * 119.80826 * 180.02562 * 17 16 15 21 21 C 1.38202 * 119.97758 * 359.97438 * 20 17 16 22 22 C 1.50699 * 119.91906 * 180.02562 * 21 20 17 23 23 O 1.42901 * 109.46830 * 300.00255 * 22 21 20 24 24 Si 1.86298 * 109.46950 * 180.02562 * 22 21 20 25 25 C 1.38274 * 120.16279 * 0.27985 * 21 20 17 26 26 C 1.38306 * 120.18799 * 359.44527 * 25 21 20 27 27 C 1.53778 * 113.68681 * 277.53196 * 6 4 3 28 28 H 1.09001 * 109.46944 * 59.99603 * 1 2 3 29 29 H 1.08998 * 109.47225 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46775 * 300.00192 * 1 2 3 31 31 H 1.09000 * 109.46752 * 240.00337 * 2 1 3 32 32 H 1.08992 * 109.47145 * 120.00281 * 2 1 3 33 33 H 1.08999 * 113.61382 * 25.50870 * 8 6 4 34 34 H 1.09000 * 113.61171 * 254.61396 * 8 6 4 35 35 H 1.09004 * 109.47144 * 60.00596 * 11 9 8 36 36 H 1.08991 * 109.47271 * 300.00200 * 11 9 8 37 37 H 1.09005 * 109.46853 * 299.99681 * 19 18 17 38 38 H 1.08996 * 109.47844 * 59.99634 * 19 18 17 39 39 H 1.09001 * 109.47570 * 180.02562 * 19 18 17 40 40 H 1.08000 * 120.01316 * 180.02562 * 20 17 16 41 41 H 1.08991 * 109.47351 * 60.00403 * 22 21 20 42 42 H 0.96708 * 114.00246 * 299.99864 * 23 22 21 43 43 H 1.48506 * 109.99834 * 180.02562 * 24 22 21 44 44 H 1.48502 * 110.00011 * 301.31529 * 24 22 21 45 45 H 1.07997 * 119.90292 * 179.72558 * 25 21 20 46 46 H 1.08004 * 119.98189 * 180.29594 * 26 25 21 47 47 H 1.08999 * 113.61365 * 105.46239 * 27 6 4 48 48 H 1.08995 * 113.61922 * 334.55559 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0808 0.5866 -0.0005 6 6 3.9209 2.9374 0.0000 7 1 3.4716 3.5810 0.7564 8 6 5.4583 2.9680 -0.0001 9 6 5.3566 4.1442 -0.9854 10 9 5.2852 5.3940 -0.3609 11 6 6.3986 4.0980 -2.1047 12 16 6.1772 5.5296 -3.1965 13 8 6.5222 6.7307 -2.5202 14 8 4.9595 5.4206 -3.9210 15 8 7.2588 5.3705 -4.2554 16 6 6.9929 4.4067 -5.1774 17 6 6.2989 4.7270 -6.3428 18 16 5.7642 6.3818 -6.6261 19 6 4.9333 6.2724 -8.2349 20 6 6.0303 3.7387 -7.2796 21 6 6.4513 2.4417 -7.0551 22 6 6.1594 1.3698 -8.0734 23 8 4.7461 1.2500 -8.2470 24 14 6.8517 -0.2550 -7.4805 25 6 7.1352 2.1240 -5.8961 26 6 7.4115 3.1045 -4.9607 27 6 3.9858 3.5796 -1.3957 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 5.9128 2.0757 -0.4306 34 1 5.8896 3.2413 0.9630 35 1 6.2739 3.1804 -2.6796 36 1 7.3985 4.1223 -1.6714 37 1 5.6423 5.9267 -8.9872 38 1 4.1030 5.5694 -8.1680 39 1 4.5558 7.2554 -8.5165 40 1 5.4931 3.9834 -8.1840 41 1 6.6210 1.6365 -9.0241 42 1 4.2692 1.0140 -7.4395 43 1 6.5709 -1.3203 -8.4763 44 1 8.3161 -0.1349 -7.2653 45 1 7.4584 1.1082 -5.7229 46 1 7.9501 2.8536 -4.0587 47 1 3.2286 4.3466 -1.5591 48 1 4.0375 2.8547 -2.2080 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_40_13446746_16464788.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 5 2021 23:19:55 Heat of formation + Delta-G solvation = -194.578608 kcal Electronic energy + Delta-G solvation = -38005.011523 eV Core-core repulsion = 32776.401672 eV Total energy + Delta-G solvation = -5228.609851 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 421.089 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -49.20171 -42.31646 -41.80055 -39.92515 -39.30654 -38.43742 -37.49126 -37.42036 -37.28157 -32.94622 -32.71676 -32.33432 -31.83795 -29.91262 -27.25681 -26.99831 -26.86203 -24.62113 -23.97717 -23.59517 -22.27956 -21.69044 -20.83092 -19.77412 -19.25998 -18.98899 -18.80116 -18.48795 -17.79131 -17.73054 -17.58734 -17.34779 -16.96463 -16.65579 -16.29466 -16.20469 -16.14170 -15.82887 -15.41411 -15.31822 -15.28317 -14.86196 -14.70975 -14.62938 -14.55906 -14.44053 -14.26928 -14.24306 -13.72982 -13.64144 -13.62703 -13.57742 -13.43228 -13.39310 -13.22641 -13.02915 -12.90719 -12.88208 -12.63647 -12.47876 -12.40812 -12.18293 -11.90232 -11.81936 -11.51931 -11.51270 -11.45659 -11.35729 -11.02408 -10.53541 -10.12413 -8.66137 -4.98216 -1.27772 -0.25562 -0.10309 0.24141 0.91732 1.04370 1.19695 1.33017 1.60887 1.66026 2.01434 2.13154 2.39069 2.67261 2.75659 2.81543 2.92254 3.21260 3.29163 3.36043 3.43057 3.52167 3.65252 3.76723 3.88206 3.96225 4.03119 4.03600 4.08359 4.13183 4.13532 4.16174 4.34278 4.37298 4.38014 4.40213 4.45899 4.48977 4.65190 4.68330 4.69429 4.77133 4.78626 4.86134 4.89231 4.93857 5.06667 5.08988 5.17162 5.45475 5.47839 6.65385 6.74339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 O -0.362 6.362 4 C 0.479 3.521 5 O -0.525 6.525 6 C -0.111 4.111 7 H 0.144 0.856 8 C -0.112 4.112 9 C 0.089 3.911 10 F -0.192 7.192 11 C -0.657 4.657 12 S 2.575 3.425 13 O -0.963 6.963 14 O -0.944 6.944 15 O -0.663 6.663 16 C 0.050 3.950 17 C -0.072 4.072 18 S -0.147 6.147 19 C -0.137 4.137 20 C -0.102 4.102 21 C -0.075 4.075 22 C -0.079 4.079 23 O -0.552 6.552 24 Si 0.781 3.219 25 C -0.103 4.103 26 C -0.097 4.097 27 C -0.145 4.145 28 H 0.068 0.932 29 H 0.096 0.904 30 H 0.064 0.936 31 H 0.077 0.923 32 H 0.069 0.931 33 H 0.136 0.864 34 H 0.108 0.892 35 H 0.194 0.806 36 H 0.185 0.815 37 H 0.100 0.900 38 H 0.100 0.900 39 H 0.126 0.874 40 H 0.149 0.851 41 H 0.116 0.884 42 H 0.398 0.602 43 H -0.303 1.303 44 H -0.272 1.272 45 H 0.177 0.823 46 H 0.190 0.810 47 H 0.105 0.895 48 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.686 -8.788 -0.490 8.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.019 4.019 3 O -0.279 6.279 4 C 0.323 3.677 5 O -0.414 6.414 6 C -0.130 4.130 7 H 0.162 0.838 8 C -0.150 4.150 9 C 0.069 3.931 10 F -0.172 7.172 11 C -0.785 4.785 12 S 2.674 3.326 13 O -0.961 6.961 14 O -0.942 6.942 15 O -0.622 6.622 16 C 0.001 3.999 17 C -0.188 4.188 18 S 0.098 5.902 19 C -0.305 4.305 20 C -0.126 4.126 21 C -0.079 4.079 22 C -0.188 4.188 23 O -0.360 6.360 24 Si 0.685 3.315 25 C -0.123 4.123 26 C -0.118 4.118 27 C -0.182 4.182 28 H 0.087 0.913 29 H 0.115 0.885 30 H 0.083 0.917 31 H 0.095 0.905 32 H 0.087 0.913 33 H 0.154 0.846 34 H 0.126 0.874 35 H 0.212 0.788 36 H 0.203 0.797 37 H 0.119 0.881 38 H 0.119 0.881 39 H 0.144 0.856 40 H 0.167 0.833 41 H 0.133 0.867 42 H 0.248 0.752 43 H -0.231 1.231 44 H -0.199 1.199 45 H 0.194 0.806 46 H 0.207 0.793 47 H 0.124 0.876 48 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -0.835 -7.633 -0.901 7.731 hybrid contribution 0.116 -0.305 -0.625 0.705 sum -0.719 -7.938 -1.525 8.115 Atomic orbital electron populations 1.21841 0.91179 1.04214 1.03592 1.23285 0.96611 0.79080 1.02921 1.86536 1.24215 1.33809 1.83301 1.23505 0.80661 0.92153 0.71398 1.90667 1.60894 1.43541 1.46313 1.22569 0.97764 0.91130 1.01575 0.83810 1.23621 0.93260 0.97282 1.00871 1.21460 0.96351 0.81739 0.93534 1.92981 1.97151 1.43186 1.83918 1.31280 1.10998 1.23636 1.12575 1.06109 0.73780 0.77309 0.75426 1.93614 1.82958 1.44223 1.75335 1.93680 1.46394 1.87072 1.67074 1.85772 1.67039 1.60543 1.48854 1.17841 1.05747 0.86712 0.89567 1.22130 1.00760 0.98558 0.97316 1.86163 1.68407 1.06959 1.28640 1.23884 1.03764 1.08972 0.93857 1.21138 1.00907 0.91687 0.98882 1.20675 0.96515 0.94569 0.96120 1.25351 0.87355 1.05497 1.00638 1.86504 1.16742 1.92941 1.39838 0.93766 0.79052 0.72757 0.85877 1.21291 0.98286 1.00542 0.92187 1.21683 0.98519 0.88467 1.03161 1.23893 0.95503 1.01972 0.96877 0.91267 0.88515 0.91660 0.90504 0.91278 0.84579 0.87366 0.78810 0.79748 0.88071 0.88096 0.85598 0.83350 0.86696 0.75189 1.23085 1.19876 0.80616 0.79314 0.87623 0.84705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.83 10.29 71.98 0.74 1.57 16 2 C 0.05 -0.12 6.19 71.98 0.45 0.32 16 3 O -0.36 -0.24 10.22 -51.44 -0.53 -0.76 16 4 C 0.48 0.09 7.49 71.24 0.53 0.62 16 5 O -0.52 -2.16 15.65 21.97 0.34 -1.82 16 6 C -0.11 0.42 4.23 -11.01 -0.05 0.37 16 7 H 0.14 -0.78 8.14 -2.39 -0.02 -0.80 16 8 C -0.11 0.64 6.86 31.12 0.21 0.86 16 9 C 0.09 -0.21 1.62 -10.26 -0.02 -0.23 16 10 F -0.19 -0.94 16.28 44.97 0.73 -0.21 16 11 C -0.66 3.70 5.18 71.98 0.37 4.07 16 12 S 2.58 16.21 4.84 -56.49 -0.27 15.93 16 13 O -0.96 -15.39 17.54 -118.57 -2.08 -17.47 16 14 O -0.94 -8.29 15.04 -118.57 -1.78 -10.08 16 15 O -0.66 -3.94 9.44 -62.67 -0.59 -4.54 16 16 C 0.05 0.11 4.80 22.60 0.11 0.22 16 17 C -0.07 -0.30 5.49 22.68 0.12 -0.17 16 18 S -0.15 -1.11 20.63 -56.49 -1.17 -2.27 16 19 C -0.14 0.25 9.15 113.37 1.04 1.28 16 20 C -0.10 0.08 8.92 22.39 0.20 0.28 16 21 C -0.08 0.39 5.39 -19.86 -0.11 0.29 16 22 C -0.08 0.51 2.82 71.24 0.20 0.71 16 23 O -0.55 2.86 12.76 -148.98 -1.90 0.96 16 24 Si 0.78 -6.47 29.78 68.60 2.04 -4.42 16 25 C -0.10 0.89 8.66 22.29 0.19 1.08 16 26 C -0.10 0.65 8.46 22.34 0.19 0.84 16 27 C -0.15 0.60 7.08 31.13 0.22 0.82 16 28 H 0.07 -0.37 8.14 -2.39 -0.02 -0.39 16 29 H 0.10 -0.81 8.14 -2.39 -0.02 -0.83 16 30 H 0.06 -0.30 8.14 -2.39 -0.02 -0.32 16 31 H 0.08 -0.26 8.13 -2.39 -0.02 -0.28 16 32 H 0.07 -0.13 8.13 -2.39 -0.02 -0.15 16 33 H 0.14 -1.15 7.40 -2.39 -0.02 -1.16 16 34 H 0.11 -0.73 8.14 -2.39 -0.02 -0.75 16 35 H 0.19 -2.70 6.41 -2.39 -0.02 -2.72 16 36 H 0.18 -2.06 8.14 -2.39 -0.02 -2.08 16 37 H 0.10 -0.46 7.75 -2.39 -0.02 -0.48 16 38 H 0.10 -0.36 7.75 -2.39 -0.02 -0.38 16 39 H 0.13 -0.51 8.14 -2.39 -0.02 -0.53 16 40 H 0.15 -0.39 5.88 -2.91 -0.02 -0.41 16 41 H 0.12 -0.62 7.96 -2.39 -0.02 -0.64 16 42 H 0.40 -5.21 8.70 -74.05 -0.64 -5.85 16 43 H -0.30 -0.20 7.11 99.48 0.71 0.51 16 44 H -0.27 1.31 7.11 99.48 0.71 2.02 16 45 H 0.18 -2.66 4.86 -2.91 -0.01 -2.67 16 46 H 0.19 -2.87 7.50 -2.91 -0.02 -2.89 16 47 H 0.11 -0.33 8.14 -2.39 -0.02 -0.35 16 48 H 0.13 -1.12 7.92 -2.39 -0.02 -1.14 16 Total: 0.00 -33.67 422.54 -0.38 -34.05 By element: Atomic # 1 Polarization: -22.72 SS G_CDS: 0.41 Total: -22.31 kcal Atomic # 6 Polarization: 8.53 SS G_CDS: 4.41 Total: 12.94 kcal Atomic # 8 Polarization: -27.17 SS G_CDS: -6.54 Total: -33.71 kcal Atomic # 9 Polarization: -0.94 SS G_CDS: 0.73 Total: -0.21 kcal Atomic # 14 Polarization: -6.47 SS G_CDS: 2.04 Total: -4.42 kcal Atomic # 16 Polarization: 15.10 SS G_CDS: -1.44 Total: 13.66 kcal Total: -33.67 -0.38 -34.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_13446746_16464788.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -160.526 kcal (2) G-P(sol) polarization free energy of solvation -33.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds