Wall clock time and date at job start Fri Mar 5 2021 23:44:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42896 * 114.00060 * 2 1 4 4 C 1.52994 * 112.91064 * 294.12201 * 3 2 1 5 5 F 1.39897 * 109.47469 * 196.16752 * 4 3 2 6 6 F 1.39902 * 109.46667 * 316.16732 * 4 3 2 7 7 F 1.39903 * 109.47312 * 76.16407 * 4 3 2 8 8 C 1.53786 * 113.61533 * 162.86947 * 3 2 1 9 9 C 1.54060 * 87.07690 * 270.88101 * 8 3 2 10 10 H 1.08996 * 113.69327 * 220.05200 * 9 8 3 11 11 C 1.52999 * 113.61305 * 89.06993 * 9 8 3 12 12 S 1.81406 * 109.46902 * 87.62021 * 11 9 8 13 13 O 1.42097 * 110.54212 * 291.62459 * 12 11 9 14 14 O 1.42095 * 110.54172 * 68.37253 * 12 11 9 15 15 O 1.52196 * 104.44919 * 180.02562 * 12 11 9 16 16 C 1.36008 * 114.00308 * 74.99600 * 15 12 11 17 17 C 1.39366 * 120.08369 * 269.72695 * 16 15 12 18 18 S 1.76202 * 120.09485 * 359.97438 * 17 16 15 19 19 C 1.81404 * 102.99680 * 179.97438 * 18 17 16 20 20 C 1.38796 * 119.80956 * 179.69833 * 17 16 15 21 21 C 1.38205 * 119.96860 * 0.62132 * 20 17 16 22 22 C 1.50699 * 119.91185 * 179.67840 * 21 20 17 23 23 O 1.42898 * 109.47629 * 64.97506 * 22 21 20 24 24 Si 1.86306 * 109.47077 * 184.97623 * 22 21 20 25 25 C 1.38267 * 120.17036 * 359.65272 * 21 20 17 26 26 C 1.38305 * 120.18706 * 0.02657 * 25 21 20 27 27 C 1.53784 * 86.98583 * 334.56775 * 9 8 3 28 28 H 1.08999 * 109.47079 * 303.88253 * 1 2 3 29 29 H 1.09000 * 109.47089 * 63.88288 * 1 2 3 30 30 H 1.09000 * 109.47143 * 183.88878 * 1 2 3 31 31 H 1.08993 * 113.61231 * 25.42875 * 8 3 2 32 32 H 1.08998 * 113.61546 * 156.25298 * 8 3 2 33 33 H 1.08995 * 109.47373 * 207.61743 * 11 9 8 34 34 H 1.09002 * 109.47336 * 327.62143 * 11 9 8 35 35 H 1.08992 * 109.47244 * 299.99860 * 19 18 17 36 36 H 1.08997 * 109.47319 * 60.00259 * 19 18 17 37 37 H 1.09000 * 109.46812 * 179.97438 * 19 18 17 38 38 H 1.07991 * 120.01454 * 180.29523 * 20 17 16 39 39 H 1.09000 * 109.47440 * 304.97486 * 22 21 20 40 40 H 0.96698 * 114.00747 * 179.97438 * 23 22 21 41 41 H 1.48501 * 109.99928 * 299.99874 * 24 22 21 42 42 H 1.48500 * 109.99772 * 61.31833 * 24 22 21 43 43 H 1.07998 * 119.90446 * 180.02562 * 25 21 20 44 44 H 1.08005 * 119.98568 * 180.02562 * 26 25 21 45 45 H 1.08999 * 113.61234 * 270.84266 * 27 9 8 46 46 H 1.08999 * 113.61436 * 140.01805 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.7263 2.0838 -1.2862 5 9 2.6047 3.1687 -1.3783 6 9 1.9067 1.2428 -2.3896 7 9 0.4079 2.5515 -1.2669 8 6 3.4909 1.3205 0.4150 9 6 3.0008 1.4806 1.8668 10 1 3.5977 2.1763 2.4564 11 6 2.7578 0.1499 2.5818 12 16 4.3006 -0.4127 3.3527 13 8 5.2493 -0.7787 2.3602 14 8 4.6600 0.4412 4.4301 15 8 3.9324 -1.7287 4.0227 16 6 3.7822 -2.7671 3.1572 17 6 2.5338 -3.0366 2.5994 18 16 1.1458 -2.0335 3.0138 19 6 -0.1985 -2.7790 2.0504 20 6 2.3883 -4.0939 1.7120 21 6 3.4773 -4.8834 1.3943 22 6 3.3162 -6.0355 0.4362 23 8 2.9762 -5.5347 -0.8582 24 14 4.9152 -6.9862 0.3340 25 6 4.7141 -4.6186 1.9528 26 6 4.8682 -3.5628 2.8327 27 6 1.7243 2.1070 1.2810 28 1 -0.3633 0.5729 0.8531 29 1 -0.3633 0.4524 -0.9227 30 1 -0.3633 -1.0253 0.0697 31 1 4.0059 0.3780 0.2295 32 1 4.0405 2.1841 0.0407 33 1 1.9959 0.2838 3.3496 34 1 2.4199 -0.5939 1.8603 35 1 0.0477 -2.7360 0.9895 36 1 -0.3281 -3.8185 2.3515 37 1 -1.1229 -2.2307 2.2319 38 1 1.4235 -4.3027 1.2741 39 1 2.5237 -6.6946 0.7905 40 1 2.8572 -6.2226 -1.5273 41 1 6.0039 -6.0987 -0.1479 42 1 5.2634 -7.5393 1.6674 43 1 5.5622 -5.2381 1.7012 44 1 5.8359 -3.3586 3.2667 45 1 1.7907 3.1864 1.1444 46 1 0.8126 1.8004 1.7935 There are 73 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 73 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV m_40_13446746_17541816.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 5 2021 23:44:22 Heat of formation + Delta-G solvation = -244.384463 kcal Electronic energy + Delta-G solvation = -41480.178118 eV Core-core repulsion = 35757.408904 eV Total energy + Delta-G solvation = -5722.769214 eV No. of doubly occupied orbitals = 73 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 429.070 amu Computer time = 2.23 seconds Orbital eigenvalues (eV) -51.16563 -48.71352 -48.59513 -42.28417 -41.52307 -39.90289 -38.22692 -37.56590 -37.42369 -37.10582 -33.02352 -32.48517 -31.83369 -30.31829 -28.45077 -27.87254 -27.06586 -26.89610 -24.78545 -23.82062 -23.42180 -21.78921 -20.80190 -19.95414 -19.64993 -19.44913 -19.28009 -18.90524 -18.66554 -18.46045 -18.11117 -17.41489 -17.10466 -17.07527 -16.64048 -16.30674 -15.91797 -15.71910 -15.66909 -15.56320 -15.51300 -15.38761 -15.35152 -15.11262 -15.05951 -14.87454 -14.78454 -14.69237 -14.57343 -14.35859 -14.26014 -14.17108 -14.04365 -13.75371 -13.42302 -13.38357 -13.25595 -13.17167 -13.08616 -13.05352 -12.67235 -12.54684 -12.39846 -12.32252 -12.14690 -12.07667 -11.65554 -11.43688 -11.05235 -10.83581 -10.56330 -10.14000 -8.67552 -5.10873 -1.11788 -0.33711 -0.12135 0.03606 0.90783 0.99496 1.11918 1.52167 1.54653 1.83790 1.97539 2.03960 2.49282 2.54329 2.61373 2.81061 2.87943 3.05734 3.09611 3.23052 3.28975 3.33347 3.49287 3.55922 3.58451 3.74306 3.78309 3.82732 3.89373 3.94796 4.03083 4.08106 4.10800 4.18287 4.28916 4.29784 4.35591 4.40602 4.47194 4.51907 4.57513 4.59651 4.63844 4.69736 4.82064 4.86561 4.99717 5.37002 5.59900 6.42033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 O -0.325 6.325 3 C 0.044 3.956 4 C 0.437 3.563 5 F -0.174 7.174 6 F -0.173 7.173 7 F -0.182 7.182 8 C -0.126 4.126 9 C -0.089 4.089 10 H 0.108 0.892 11 C -0.641 4.641 12 S 2.582 3.418 13 O -0.944 6.944 14 O -0.923 6.923 15 O -0.656 6.656 16 C 0.086 3.914 17 C -0.098 4.098 18 S -0.086 6.086 19 C -0.159 4.159 20 C -0.086 4.086 21 C -0.036 4.036 22 C -0.076 4.076 23 O -0.542 6.542 24 Si 0.683 3.317 25 C -0.111 4.111 26 C -0.059 4.059 27 C -0.136 4.136 28 H 0.057 0.943 29 H 0.053 0.947 30 H 0.097 0.903 31 H 0.108 0.892 32 H 0.124 0.876 33 H 0.149 0.851 34 H 0.168 0.832 35 H 0.094 0.906 36 H 0.091 0.909 37 H 0.116 0.884 38 H 0.145 0.855 39 H 0.081 0.919 40 H 0.386 0.614 41 H -0.244 1.244 42 H -0.250 1.250 43 H 0.137 0.863 44 H 0.152 0.848 45 H 0.112 0.888 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.328 -5.922 -2.511 8.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 O -0.243 6.243 3 C 0.001 3.999 4 C 0.383 3.617 5 F -0.156 7.156 6 F -0.155 7.155 7 F -0.163 7.163 8 C -0.163 4.163 9 C -0.109 4.109 10 H 0.126 0.874 11 C -0.769 4.769 12 S 2.678 3.322 13 O -0.942 6.942 14 O -0.921 6.921 15 O -0.614 6.614 16 C 0.037 3.963 17 C -0.213 4.213 18 S 0.159 5.841 19 C -0.327 4.327 20 C -0.109 4.109 21 C -0.038 4.038 22 C -0.187 4.187 23 O -0.349 6.349 24 Si 0.583 3.417 25 C -0.131 4.131 26 C -0.081 4.081 27 C -0.174 4.174 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.115 0.885 31 H 0.126 0.874 32 H 0.142 0.858 33 H 0.167 0.833 34 H 0.186 0.814 35 H 0.113 0.887 36 H 0.110 0.890 37 H 0.134 0.866 38 H 0.163 0.837 39 H 0.099 0.901 40 H 0.234 0.766 41 H -0.169 1.169 42 H -0.175 1.175 43 H 0.155 0.845 44 H 0.169 0.831 45 H 0.130 0.870 46 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -3.955 -4.607 -0.752 6.118 hybrid contribution -1.339 -0.173 -0.919 1.633 sum -5.293 -4.780 -1.671 7.325 Atomic orbital electron populations 1.23180 0.79963 1.03943 1.01671 1.88082 1.20728 1.21699 1.93779 1.23900 0.99615 0.86450 0.89945 1.21163 0.74302 0.78758 0.87519 1.93181 1.69074 1.56733 1.96582 1.93225 1.94884 1.70812 1.56533 1.93190 1.36789 1.89507 1.96832 1.23523 0.91628 1.06787 0.94348 1.21760 0.99149 0.94225 0.95723 0.87355 1.31357 1.22950 1.08153 1.14399 1.06035 0.77153 0.74220 0.74840 1.93657 1.58425 1.79528 1.62634 1.93657 1.81431 1.64576 1.52481 1.85766 1.90217 1.33700 1.51737 1.17298 0.93195 0.91402 0.94388 1.21985 0.96150 1.01731 1.01391 1.85880 1.00366 1.37461 1.60346 1.23969 0.99737 1.05502 1.03512 1.20890 1.00237 0.93498 0.96314 1.19462 0.92965 0.95633 0.95783 1.24726 1.11370 0.97562 0.85039 1.86498 1.93147 1.37257 1.17963 0.95116 0.76131 0.84688 0.85756 1.20883 0.96770 0.97667 0.97811 1.21145 0.98224 0.92879 0.95834 1.23566 0.99419 1.00843 0.93560 0.92464 0.92796 0.88470 0.87395 0.85765 0.83336 0.81438 0.88703 0.88977 0.86579 0.83690 0.90146 0.76588 1.16873 1.17502 0.84537 0.83051 0.86969 0.88318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.02 10.32 101.05 1.04 1.02 16 2 O -0.33 0.05 8.36 -35.23 -0.29 -0.24 16 3 C 0.04 -0.01 0.85 -89.80 -0.08 -0.08 16 4 C 0.44 0.52 2.52 37.15 0.09 0.62 16 5 F -0.17 -0.24 15.81 2.25 0.04 -0.21 16 6 F -0.17 -0.50 17.10 2.25 0.04 -0.47 16 7 F -0.18 -0.22 15.39 2.25 0.03 -0.19 16 8 C -0.13 0.03 6.90 -25.77 -0.18 -0.15 16 9 C -0.09 0.08 3.86 -89.66 -0.35 -0.27 16 10 H 0.11 -0.23 8.13 -51.93 -0.42 -0.65 16 11 C -0.64 0.01 3.53 37.16 0.13 0.14 16 12 S 2.58 8.62 5.16 -107.50 -0.55 8.06 16 13 O -0.94 -4.65 16.26 -67.04 -1.09 -5.74 16 14 O -0.92 -5.77 18.09 -67.03 -1.21 -6.98 16 15 O -0.66 -2.30 9.53 -52.09 -0.50 -2.80 16 16 C 0.09 0.25 4.80 -39.07 -0.19 0.06 16 17 C -0.10 -0.12 5.47 -38.96 -0.21 -0.33 16 18 S -0.09 0.08 16.92 -107.50 -1.82 -1.74 16 19 C -0.16 0.66 8.65 101.05 0.87 1.53 16 20 C -0.09 -0.02 9.00 -39.39 -0.35 -0.37 16 21 C -0.04 -0.03 5.38 -104.62 -0.56 -0.59 16 22 C -0.08 0.15 2.79 36.01 0.10 0.25 16 23 O -0.54 0.93 12.81 -35.23 -0.45 0.48 16 24 Si 0.68 -1.68 29.84 -169.99 -5.07 -6.76 16 25 C -0.11 -0.17 8.66 -39.55 -0.34 -0.51 16 26 C -0.06 -0.15 9.04 -39.47 -0.36 -0.50 16 27 C -0.14 0.27 6.50 -25.91 -0.17 0.10 16 28 H 0.06 -0.20 6.58 -51.93 -0.34 -0.54 16 29 H 0.05 -0.08 6.64 -51.93 -0.34 -0.43 16 30 H 0.10 -0.39 6.22 -51.93 -0.32 -0.71 16 31 H 0.11 0.07 8.10 -51.93 -0.42 -0.36 16 32 H 0.12 -0.20 7.01 -51.93 -0.36 -0.56 16 33 H 0.15 -0.27 7.11 -51.93 -0.37 -0.64 16 34 H 0.17 -0.03 3.46 -40.04 -0.14 -0.17 16 35 H 0.09 -0.43 6.42 -51.93 -0.33 -0.76 16 36 H 0.09 -0.43 7.76 -51.93 -0.40 -0.83 16 37 H 0.12 -0.66 8.14 -51.92 -0.42 -1.08 16 38 H 0.15 -0.29 5.88 -52.49 -0.31 -0.60 16 39 H 0.08 -0.33 7.96 -51.93 -0.41 -0.74 16 40 H 0.39 -2.54 8.74 45.56 0.40 -2.14 16 41 H -0.24 -0.19 7.05 56.52 0.40 0.20 16 42 H -0.25 0.04 7.11 56.52 0.40 0.44 16 43 H 0.14 0.05 4.85 -52.49 -0.25 -0.20 16 44 H 0.15 0.17 8.06 -52.48 -0.42 -0.26 16 45 H 0.11 -0.34 8.05 -51.93 -0.42 -0.75 16 46 H 0.10 -0.31 6.64 -51.93 -0.34 -0.65 16 LS Contribution 393.43 15.07 5.93 5.93 Total: 0.00 -10.82 393.43 -10.35 -21.16 By element: Atomic # 1 Polarization: -6.59 SS G_CDS: -4.85 Total: -11.44 kcal Atomic # 6 Polarization: 1.46 SS G_CDS: -0.54 Total: 0.92 kcal Atomic # 8 Polarization: -11.73 SS G_CDS: -3.54 Total: -15.28 kcal Atomic # 9 Polarization: -0.97 SS G_CDS: 0.11 Total: -0.86 kcal Atomic # 14 Polarization: -1.68 SS G_CDS: -5.07 Total: -6.76 kcal Atomic # 16 Polarization: 8.70 SS G_CDS: -2.37 Total: 6.32 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -10.82 -10.35 -21.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_13446746_17541816.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -223.220 kcal (2) G-P(sol) polarization free energy of solvation -10.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -234.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -244.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.23 seconds