Wall clock time and date at job start Fri Mar 5 2021 23:44:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42896 * 114.00060 * 2 1 4 4 C 1.52994 * 112.91064 * 294.12201 * 3 2 1 5 5 F 1.39897 * 109.47469 * 196.16752 * 4 3 2 6 6 F 1.39902 * 109.46667 * 316.16732 * 4 3 2 7 7 F 1.39903 * 109.47312 * 76.16407 * 4 3 2 8 8 C 1.53786 * 113.61533 * 162.86947 * 3 2 1 9 9 C 1.54060 * 87.07690 * 270.88101 * 8 3 2 10 10 H 1.08996 * 113.69327 * 220.05200 * 9 8 3 11 11 C 1.52999 * 113.61305 * 89.06993 * 9 8 3 12 12 S 1.81406 * 109.46902 * 87.62021 * 11 9 8 13 13 O 1.42097 * 110.54212 * 291.62459 * 12 11 9 14 14 O 1.42095 * 110.54172 * 68.37253 * 12 11 9 15 15 O 1.52196 * 104.44919 * 180.02562 * 12 11 9 16 16 C 1.36008 * 114.00308 * 74.99600 * 15 12 11 17 17 C 1.39366 * 120.08369 * 269.72695 * 16 15 12 18 18 S 1.76202 * 120.09485 * 359.97438 * 17 16 15 19 19 C 1.81404 * 102.99680 * 179.97438 * 18 17 16 20 20 C 1.38796 * 119.80956 * 179.69833 * 17 16 15 21 21 C 1.38205 * 119.96860 * 0.62132 * 20 17 16 22 22 C 1.50699 * 119.91185 * 179.67840 * 21 20 17 23 23 O 1.42898 * 109.47629 * 64.97506 * 22 21 20 24 24 Si 1.86306 * 109.47077 * 184.97623 * 22 21 20 25 25 C 1.38267 * 120.17036 * 359.65272 * 21 20 17 26 26 C 1.38305 * 120.18706 * 0.02657 * 25 21 20 27 27 C 1.53784 * 86.98583 * 334.56775 * 9 8 3 28 28 H 1.08999 * 109.47079 * 303.88253 * 1 2 3 29 29 H 1.09000 * 109.47089 * 63.88288 * 1 2 3 30 30 H 1.09000 * 109.47143 * 183.88878 * 1 2 3 31 31 H 1.08993 * 113.61231 * 25.42875 * 8 3 2 32 32 H 1.08998 * 113.61546 * 156.25298 * 8 3 2 33 33 H 1.08995 * 109.47373 * 207.61743 * 11 9 8 34 34 H 1.09002 * 109.47336 * 327.62143 * 11 9 8 35 35 H 1.08992 * 109.47244 * 299.99860 * 19 18 17 36 36 H 1.08997 * 109.47319 * 60.00259 * 19 18 17 37 37 H 1.09000 * 109.46812 * 179.97438 * 19 18 17 38 38 H 1.07991 * 120.01454 * 180.29523 * 20 17 16 39 39 H 1.09000 * 109.47440 * 304.97486 * 22 21 20 40 40 H 0.96698 * 114.00747 * 179.97438 * 23 22 21 41 41 H 1.48501 * 109.99928 * 299.99874 * 24 22 21 42 42 H 1.48500 * 109.99772 * 61.31833 * 24 22 21 43 43 H 1.07998 * 119.90446 * 180.02562 * 25 21 20 44 44 H 1.08005 * 119.98568 * 180.02562 * 26 25 21 45 45 H 1.08999 * 113.61234 * 270.84266 * 27 9 8 46 46 H 1.08999 * 113.61436 * 140.01805 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.7263 2.0838 -1.2862 5 9 2.6047 3.1687 -1.3783 6 9 1.9067 1.2428 -2.3896 7 9 0.4079 2.5515 -1.2669 8 6 3.4909 1.3205 0.4150 9 6 3.0008 1.4806 1.8668 10 1 3.5977 2.1763 2.4564 11 6 2.7578 0.1499 2.5818 12 16 4.3006 -0.4127 3.3527 13 8 5.2493 -0.7787 2.3602 14 8 4.6600 0.4412 4.4301 15 8 3.9324 -1.7287 4.0227 16 6 3.7822 -2.7671 3.1572 17 6 2.5338 -3.0366 2.5994 18 16 1.1458 -2.0335 3.0138 19 6 -0.1985 -2.7790 2.0504 20 6 2.3883 -4.0939 1.7120 21 6 3.4773 -4.8834 1.3943 22 6 3.3162 -6.0355 0.4362 23 8 2.9762 -5.5347 -0.8582 24 14 4.9152 -6.9862 0.3340 25 6 4.7141 -4.6186 1.9528 26 6 4.8682 -3.5628 2.8327 27 6 1.7243 2.1070 1.2810 28 1 -0.3633 0.5729 0.8531 29 1 -0.3633 0.4524 -0.9227 30 1 -0.3633 -1.0253 0.0697 31 1 4.0059 0.3780 0.2295 32 1 4.0405 2.1841 0.0407 33 1 1.9959 0.2838 3.3496 34 1 2.4199 -0.5939 1.8603 35 1 0.0477 -2.7360 0.9895 36 1 -0.3281 -3.8185 2.3515 37 1 -1.1229 -2.2307 2.2319 38 1 1.4235 -4.3027 1.2741 39 1 2.5237 -6.6946 0.7905 40 1 2.8572 -6.2226 -1.5273 41 1 6.0039 -6.0987 -0.1479 42 1 5.2634 -7.5393 1.6674 43 1 5.5622 -5.2381 1.7012 44 1 5.8359 -3.3586 3.2667 45 1 1.7907 3.1864 1.1444 46 1 0.8126 1.8004 1.7935 There are 73 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 73 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_40_13446746_17541816.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 5 2021 23:44:21 Heat of formation + Delta-G solvation = -246.311450 kcal Electronic energy + Delta-G solvation = -41480.261678 eV Core-core repulsion = 35757.408904 eV Total energy + Delta-G solvation = -5722.852774 eV No. of doubly occupied orbitals = 73 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 429.070 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -51.25186 -48.78741 -48.71785 -42.40801 -41.44214 -39.93637 -38.53596 -37.47933 -37.40829 -37.27480 -33.03353 -32.49680 -31.84184 -30.00573 -28.29527 -27.87283 -27.01775 -26.76649 -24.82257 -23.85835 -23.42639 -21.88366 -20.77819 -20.02663 -19.76845 -19.53544 -19.33518 -19.03915 -18.62462 -18.43426 -18.08613 -17.39450 -17.15191 -17.11188 -16.51137 -16.35138 -15.86347 -15.69001 -15.60689 -15.59324 -15.55034 -15.37720 -15.28271 -15.16058 -14.99922 -14.90730 -14.88383 -14.73151 -14.57535 -14.36753 -14.23307 -14.14534 -14.00617 -13.58766 -13.56462 -13.51710 -13.39621 -13.25848 -13.17948 -12.90164 -12.66732 -12.45370 -12.32416 -12.21279 -12.15088 -12.05145 -11.55222 -11.37463 -11.04689 -10.77646 -10.44346 -10.13205 -8.59050 -4.95871 -1.28059 -0.42659 -0.18419 0.12355 0.81329 1.13642 1.28807 1.52368 1.64374 1.97287 1.99505 2.09502 2.33473 2.54524 2.60927 2.71865 2.84179 3.11728 3.18921 3.20992 3.27502 3.31421 3.48580 3.52394 3.63758 3.83019 3.92228 3.99431 4.14905 4.18249 4.21766 4.23254 4.31959 4.36003 4.43873 4.44233 4.50009 4.53664 4.55029 4.57922 4.64476 4.70404 4.75579 4.79644 4.91647 4.92554 4.97275 5.32459 5.74257 6.89485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.002 4.002 2 O -0.337 6.337 3 C 0.043 3.957 4 C 0.434 3.566 5 F -0.178 7.178 6 F -0.187 7.187 7 F -0.182 7.182 8 C -0.136 4.136 9 C -0.096 4.096 10 H 0.120 0.880 11 C -0.618 4.618 12 S 2.575 3.425 13 O -0.971 6.971 14 O -0.963 6.963 15 O -0.662 6.662 16 C 0.058 3.942 17 C -0.099 4.099 18 S -0.097 6.097 19 C -0.157 4.157 20 C -0.086 4.086 21 C -0.044 4.044 22 C -0.075 4.075 23 O -0.558 6.558 24 Si 0.762 3.238 25 C -0.128 4.128 26 C -0.080 4.080 27 C -0.125 4.125 28 H 0.073 0.927 29 H 0.044 0.956 30 H 0.117 0.883 31 H 0.093 0.907 32 H 0.133 0.867 33 H 0.171 0.829 34 H 0.174 0.826 35 H 0.104 0.896 36 H 0.102 0.898 37 H 0.138 0.862 38 H 0.173 0.827 39 H 0.113 0.887 40 H 0.407 0.593 41 H -0.297 1.297 42 H -0.284 1.284 43 H 0.137 0.863 44 H 0.149 0.851 45 H 0.126 0.874 46 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.458 -6.371 -3.195 11.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 O -0.254 6.254 3 C 0.000 4.000 4 C 0.379 3.621 5 F -0.159 7.159 6 F -0.168 7.168 7 F -0.163 7.163 8 C -0.173 4.173 9 C -0.116 4.116 10 H 0.138 0.862 11 C -0.749 4.749 12 S 2.676 3.324 13 O -0.970 6.970 14 O -0.962 6.962 15 O -0.621 6.621 16 C 0.010 3.990 17 C -0.214 4.214 18 S 0.148 5.852 19 C -0.325 4.325 20 C -0.109 4.109 21 C -0.047 4.047 22 C -0.186 4.186 23 O -0.368 6.368 24 Si 0.669 3.331 25 C -0.149 4.149 26 C -0.101 4.101 27 C -0.163 4.163 28 H 0.092 0.908 29 H 0.063 0.937 30 H 0.135 0.865 31 H 0.112 0.888 32 H 0.152 0.848 33 H 0.189 0.811 34 H 0.192 0.808 35 H 0.122 0.878 36 H 0.121 0.879 37 H 0.156 0.844 38 H 0.190 0.810 39 H 0.131 0.869 40 H 0.259 0.741 41 H -0.225 1.225 42 H -0.211 1.211 43 H 0.155 0.845 44 H 0.166 0.834 45 H 0.144 0.856 46 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -7.078 -5.086 -1.437 8.833 hybrid contribution -0.403 -0.052 -0.780 0.880 sum -7.481 -5.138 -2.217 9.342 Atomic orbital electron populations 1.23410 0.78853 1.05494 1.01929 1.88074 1.21995 1.21628 1.93753 1.23962 0.99497 0.86772 0.89741 1.21465 0.74212 0.78687 0.87705 1.93170 1.69202 1.56925 1.96614 1.93192 1.94971 1.71249 1.57435 1.93186 1.36765 1.89517 1.96826 1.23634 0.92036 1.06560 0.95088 1.21875 1.00333 0.93996 0.95406 0.86240 1.31247 1.20196 1.08811 1.14672 1.06107 0.78334 0.73823 0.74169 1.93611 1.60639 1.79866 1.62875 1.93596 1.82973 1.65576 1.54012 1.85716 1.90331 1.33954 1.52097 1.17556 0.94292 0.91664 0.95490 1.22203 0.96316 1.02092 1.00811 1.85871 1.00752 1.37651 1.60923 1.24167 0.98721 1.06244 1.03335 1.21237 1.01153 0.92782 0.95754 1.19883 0.92588 0.96399 0.95851 1.24739 1.12423 0.96512 0.84879 1.86448 1.93096 1.38910 1.18392 0.94377 0.73975 0.82163 0.82598 1.21022 0.97694 0.97850 0.98287 1.21301 0.98519 0.93682 0.96612 1.23623 0.99307 1.01370 0.91999 0.90850 0.93733 0.86540 0.88824 0.84848 0.81147 0.80846 0.87779 0.87882 0.84408 0.80992 0.86919 0.74056 1.22497 1.21143 0.84530 0.83372 0.85608 0.86513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.01 10.32 113.37 1.17 1.18 16 2 O -0.34 0.47 8.36 -148.98 -1.25 -0.77 16 3 C 0.04 -0.04 0.85 -10.26 -0.01 -0.05 16 4 C 0.43 0.92 2.52 71.98 0.18 1.10 16 5 F -0.18 -0.49 15.81 44.97 0.71 0.22 16 6 F -0.19 -1.15 17.10 44.97 0.77 -0.38 16 7 F -0.18 -0.30 15.39 44.97 0.69 0.39 16 8 C -0.14 0.01 6.90 31.22 0.22 0.22 16 9 C -0.10 0.21 3.86 -10.17 -0.04 0.17 16 10 H 0.12 -0.50 8.13 -2.39 -0.02 -0.52 16 11 C -0.62 0.03 3.53 71.98 0.25 0.28 16 12 S 2.58 22.52 5.16 -56.49 -0.29 22.23 16 13 O -0.97 -12.51 16.26 -118.57 -1.93 -14.43 16 14 O -0.96 -14.38 18.09 -118.57 -2.15 -16.53 16 15 O -0.66 -6.14 9.53 -62.73 -0.60 -6.73 16 16 C 0.06 0.45 4.80 22.60 0.11 0.56 16 17 C -0.10 -0.24 5.47 22.68 0.12 -0.12 16 18 S -0.10 0.32 16.92 -56.49 -0.96 -0.64 16 19 C -0.16 1.78 8.65 113.37 0.98 2.76 16 20 C -0.09 0.04 9.00 22.40 0.20 0.24 16 21 C -0.04 -0.06 5.38 -19.87 -0.11 -0.17 16 22 C -0.08 0.38 2.79 71.24 0.20 0.58 16 23 O -0.56 2.84 12.81 -148.98 -1.91 0.94 16 24 Si 0.76 -3.36 29.84 68.60 2.05 -1.31 16 25 C -0.13 -0.65 8.66 22.29 0.19 -0.46 16 26 C -0.08 -0.63 9.04 22.34 0.20 -0.42 16 27 C -0.12 0.69 6.50 31.12 0.20 0.89 16 28 H 0.07 -0.72 6.58 -2.39 -0.02 -0.74 16 29 H 0.04 -0.19 6.64 -2.39 -0.02 -0.20 16 30 H 0.12 -1.27 6.22 -2.39 -0.01 -1.28 16 31 H 0.09 0.27 8.10 -2.39 -0.02 0.25 16 32 H 0.13 -0.34 7.01 -2.39 -0.02 -0.36 16 33 H 0.17 -0.80 7.11 -2.39 -0.02 -0.81 16 34 H 0.17 -0.12 3.46 -9.94 -0.03 -0.16 16 35 H 0.10 -1.31 6.42 -2.39 -0.02 -1.32 16 36 H 0.10 -1.31 7.76 -2.39 -0.02 -1.33 16 37 H 0.14 -2.09 8.14 -2.39 -0.02 -2.11 16 38 H 0.17 -1.15 5.88 -2.92 -0.02 -1.17 16 39 H 0.11 -1.25 7.96 -2.39 -0.02 -1.26 16 40 H 0.41 -6.24 8.74 -74.06 -0.65 -6.89 16 41 H -0.30 -1.24 7.05 99.48 0.70 -0.54 16 42 H -0.28 -0.29 7.11 99.48 0.71 0.41 16 43 H 0.14 0.49 4.85 -2.91 -0.01 0.48 16 44 H 0.15 0.95 8.06 -2.91 -0.02 0.93 16 45 H 0.13 -0.99 8.05 -2.39 -0.02 -1.01 16 46 H 0.12 -1.06 6.64 -2.39 -0.02 -1.07 16 Total: 0.00 -28.44 393.43 -0.53 -28.97 By element: Atomic # 1 Polarization: -19.16 SS G_CDS: 0.44 Total: -18.71 kcal Atomic # 6 Polarization: 2.88 SS G_CDS: 3.88 Total: 6.76 kcal Atomic # 8 Polarization: -29.71 SS G_CDS: -7.82 Total: -37.53 kcal Atomic # 9 Polarization: -1.94 SS G_CDS: 2.17 Total: 0.23 kcal Atomic # 14 Polarization: -3.36 SS G_CDS: 2.05 Total: -1.31 kcal Atomic # 16 Polarization: 22.84 SS G_CDS: -1.25 Total: 21.59 kcal Total: -28.44 -0.53 -28.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_13446746_17541816.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -217.341 kcal (2) G-P(sol) polarization free energy of solvation -28.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -245.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -246.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds