Wall clock time and date at job start Fri Mar 5 2021 23:51:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.76193 * 103.00366 * 2 1 4 4 C 1.39375 * 120.09884 * 179.97438 * 3 2 1 5 5 O 1.36011 * 120.07978 * 359.97438 * 4 3 2 6 6 S 1.52197 * 113.99536 * 90.00077 * 5 4 3 7 7 O 1.42102 * 104.27649 * 191.07125 * 6 5 4 8 8 O 1.42092 * 104.28230 * 318.93120 * 6 5 4 9 9 C 1.81407 * 104.44854 * 75.00267 * 6 5 4 10 10 H 1.08998 * 112.84608 * 53.80054 * 9 6 5 11 11 C 1.53781 * 113.61511 * 184.99904 * 9 6 5 12 12 C 1.53772 * 87.08166 * 139.97903 * 11 9 6 13 13 H 1.09005 * 113.61617 * 220.01737 * 12 11 9 14 14 N 1.46496 * 113.61738 * 89.19940 * 12 11 9 15 15 C 1.34773 * 120.00518 * 154.99539 * 14 12 11 16 16 O 1.21512 * 119.99820 * 0.02562 * 15 14 12 17 17 O 1.34640 * 120.00328 * 180.02562 * 15 14 12 18 18 C 1.45196 * 117.00067 * 180.02562 * 17 15 14 19 19 C 1.53001 * 109.47240 * 59.99892 * 18 17 15 20 20 C 1.52999 * 109.47409 * 180.02562 * 18 17 15 21 21 C 1.53003 * 109.47047 * 299.99758 * 18 17 15 22 22 C 1.53783 * 87.08472 * 334.56722 * 12 11 9 23 23 C 1.38477 * 119.83602 * 180.02562 * 4 3 2 24 24 C 1.38306 * 120.02674 * 359.72183 * 23 4 3 25 25 C 1.38274 * 120.18799 * 0.55335 * 24 23 4 26 26 C 1.50699 * 119.91756 * 179.72434 * 25 24 23 27 27 O 1.42901 * 109.46830 * 119.72417 * 26 25 24 28 28 Si 1.86298 * 109.46950 * 359.72855 * 26 25 24 29 29 C 1.38202 * 120.16279 * 359.44527 * 25 24 23 30 30 H 1.08994 * 109.47066 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46619 * 300.00078 * 1 2 3 32 32 H 1.09000 * 109.47062 * 59.99270 * 1 2 3 33 33 H 1.09007 * 113.61283 * 254.52995 * 11 9 6 34 34 H 1.09007 * 113.61289 * 25.42667 * 11 9 6 35 35 H 0.97000 * 119.99648 * 334.99950 * 14 12 11 36 36 H 1.08995 * 109.47161 * 60.00208 * 19 18 17 37 37 H 1.09007 * 109.46713 * 180.02562 * 19 18 17 38 38 H 1.09006 * 109.46883 * 299.99700 * 19 18 17 39 39 H 1.08996 * 109.47262 * 59.99200 * 20 18 17 40 40 H 1.08999 * 109.47662 * 179.97438 * 20 18 17 41 41 H 1.09008 * 109.46761 * 299.99891 * 20 18 17 42 42 H 1.08998 * 109.47061 * 60.00134 * 21 18 17 43 43 H 1.08999 * 109.47415 * 180.02562 * 21 18 17 44 44 H 1.08997 * 109.47189 * 300.00496 * 21 18 17 45 45 H 1.09002 * 113.61327 * 270.88846 * 22 12 11 46 46 H 1.08992 * 113.61666 * 139.97971 * 22 12 11 47 47 H 1.07998 * 119.98875 * 179.97438 * 23 4 3 48 48 H 1.07997 * 119.90850 * 180.27303 * 24 23 4 49 49 H 1.08991 * 109.47351 * 239.72565 * 26 25 24 50 50 H 0.96708 * 114.00246 * 299.99864 * 27 26 25 51 51 H 1.48506 * 109.99834 * 180.02562 * 28 26 25 52 52 H 1.48502 * 110.00011 * 301.31529 * 28 26 25 53 53 H 1.08000 * 120.00926 * 180.25594 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2105 1.7167 0.0000 4 6 3.5426 2.1265 0.0005 5 8 4.5402 1.2019 0.0016 6 16 4.9949 0.7805 -1.3884 7 8 5.8251 -0.3496 -1.1578 8 8 3.7893 0.6644 -2.1314 9 6 5.9791 2.1819 -1.9869 10 1 6.7756 2.4643 -1.2985 11 6 6.4492 2.0273 -3.4429 12 6 6.1404 3.5234 -3.6187 13 1 5.6792 3.7645 -4.5766 14 7 7.2704 4.3979 -3.2954 15 6 7.3540 5.6237 -3.8494 16 8 6.4918 6.0037 -4.6167 17 8 8.3928 6.4272 -3.5526 18 6 8.4175 7.7337 -4.1855 19 6 7.1650 8.5170 -3.7873 20 6 9.6631 8.4971 -3.7311 21 6 8.4507 7.5634 -5.7057 22 6 5.1298 3.3694 -2.4698 23 6 3.8480 3.4771 0.0011 24 6 2.8327 4.4163 -0.0047 25 6 1.5107 4.0110 0.0004 26 6 0.4093 5.0395 0.0003 27 8 -0.3982 4.8726 -1.1668 28 14 1.1542 6.7471 0.0010 29 6 1.1970 2.6651 -0.0001 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 7.5081 1.7860 -3.5366 34 1 5.8112 1.3765 -4.0410 35 1 7.9584 4.0946 -2.6827 36 1 7.1414 8.6384 -2.7044 37 1 7.1834 9.4977 -4.2629 38 1 6.2778 7.9730 -4.1115 39 1 10.5551 7.9389 -4.0150 40 1 9.6819 9.4778 -4.2066 41 1 9.6399 8.6184 -2.6480 42 1 7.5635 7.0194 -6.0298 43 1 8.4697 8.5442 -6.1809 44 1 9.3429 7.0053 -5.9893 45 1 4.1311 3.0856 -2.8019 46 1 5.1235 4.2116 -1.7781 47 1 4.8794 3.7974 0.0019 48 1 3.0731 5.4691 -0.0088 49 1 -0.2072 4.9118 0.8900 50 1 0.0861 4.9730 -1.9978 51 1 0.0782 7.7706 0.0015 52 1 2.0217 6.9223 1.1934 53 1 0.1636 2.3513 -0.0002 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_40_13446746_17701012.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 5 2021 23:51:11 Heat of formation + Delta-G solvation = -140.034089 kcal Electronic energy + Delta-G solvation = -40294.144948 eV Core-core repulsion = 35160.853151 eV Total energy + Delta-G solvation = -5133.291797 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 432.125 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -42.29849 -41.88330 -40.36486 -39.86765 -38.38761 -37.81034 -37.39597 -37.23631 -35.29241 -33.96170 -32.81133 -32.25764 -29.92657 -28.29418 -28.24583 -27.30093 -27.04381 -26.91646 -24.53412 -23.86585 -23.48292 -21.86987 -21.21078 -20.76251 -19.80090 -19.27688 -19.02525 -18.64796 -18.50751 -17.74906 -17.54024 -17.22001 -17.06601 -16.91542 -16.47277 -16.21290 -15.84481 -15.67390 -15.43456 -15.32233 -15.28613 -15.06917 -14.84997 -14.73364 -14.54609 -14.38525 -14.26901 -14.15482 -13.99150 -13.83756 -13.68129 -13.57901 -13.38488 -13.34726 -13.29246 -13.18610 -13.07755 -12.85711 -12.80468 -12.61761 -12.46854 -12.28880 -12.19379 -12.07677 -11.94434 -11.85031 -11.50505 -11.33662 -11.27963 -11.05736 -10.97642 -10.52646 -10.26760 -10.00782 -8.62996 -4.98616 -1.11763 -0.19952 -0.06585 0.27082 0.98888 1.14374 1.20700 1.33426 1.63943 1.77138 1.99407 2.16712 2.43756 2.72604 2.98515 3.13987 3.22781 3.38215 3.44562 3.51849 3.54470 3.71878 3.80156 3.83933 3.86105 3.97211 4.00628 4.04390 4.13829 4.16890 4.34924 4.41708 4.46628 4.46990 4.53646 4.56705 4.64834 4.66818 4.68921 4.71451 4.77029 4.80130 4.82745 4.83438 4.88353 4.93787 4.94206 4.97071 5.11612 5.17785 5.31843 5.35064 5.44094 5.50723 5.63322 6.40882 6.74455 7.37289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 S -0.147 6.147 3 C -0.072 4.072 4 C 0.059 3.941 5 O -0.667 6.667 6 S 2.582 3.418 7 O -0.976 6.976 8 O -0.951 6.951 9 C -0.629 4.629 10 H 0.187 0.813 11 C -0.117 4.117 12 C 0.156 3.844 13 H 0.114 0.886 14 N -0.684 5.684 15 C 0.649 3.351 16 O -0.585 6.585 17 O -0.369 6.369 18 C 0.129 3.871 19 C -0.180 4.180 20 C -0.140 4.140 21 C -0.182 4.182 22 C -0.129 4.129 23 C -0.090 4.090 24 C -0.106 4.106 25 C -0.075 4.075 26 C -0.076 4.076 27 O -0.552 6.552 28 Si 0.774 3.226 29 C -0.103 4.103 30 H 0.125 0.875 31 H 0.100 0.900 32 H 0.099 0.901 33 H 0.114 0.886 34 H 0.117 0.883 35 H 0.418 0.582 36 H 0.066 0.934 37 H 0.083 0.917 38 H 0.071 0.929 39 H 0.066 0.934 40 H 0.096 0.904 41 H 0.070 0.930 42 H 0.068 0.932 43 H 0.084 0.916 44 H 0.058 0.942 45 H 0.120 0.880 46 H 0.120 0.880 47 H 0.182 0.818 48 H 0.172 0.828 49 H 0.116 0.884 50 H 0.398 0.602 51 H -0.301 1.301 52 H -0.273 1.273 53 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.858 7.425 -0.925 7.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.305 4.305 2 S 0.098 5.902 3 C -0.188 4.188 4 C 0.011 3.989 5 O -0.626 6.626 6 S 2.682 3.318 7 O -0.974 6.974 8 O -0.949 6.949 9 C -0.740 4.740 10 H 0.205 0.795 11 C -0.156 4.156 12 C 0.050 3.950 13 H 0.132 0.868 14 N -0.343 5.343 15 C 0.403 3.597 16 O -0.475 6.475 17 O -0.284 6.284 18 C 0.093 3.907 19 C -0.237 4.237 20 C -0.197 4.197 21 C -0.239 4.239 22 C -0.169 4.169 23 C -0.111 4.111 24 C -0.127 4.127 25 C -0.078 4.078 26 C -0.186 4.186 27 O -0.360 6.360 28 Si 0.679 3.321 29 C -0.127 4.127 30 H 0.144 0.856 31 H 0.118 0.882 32 H 0.118 0.882 33 H 0.133 0.867 34 H 0.135 0.865 35 H 0.256 0.744 36 H 0.085 0.915 37 H 0.101 0.899 38 H 0.090 0.910 39 H 0.085 0.915 40 H 0.114 0.886 41 H 0.089 0.911 42 H 0.087 0.913 43 H 0.103 0.897 44 H 0.077 0.923 45 H 0.138 0.862 46 H 0.138 0.862 47 H 0.199 0.801 48 H 0.189 0.811 49 H 0.133 0.867 50 H 0.248 0.752 51 H -0.230 1.230 52 H -0.199 1.199 53 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 1.501 6.439 -0.240 6.616 hybrid contribution -0.371 0.140 0.663 0.773 sum 1.131 6.579 0.423 6.689 Atomic orbital electron populations 1.23872 0.90570 1.08941 1.07095 1.86102 1.11108 1.02758 1.90200 1.22096 0.95392 0.98096 1.03168 1.17677 0.82930 0.86953 1.11329 1.85710 1.56466 1.62829 1.57551 1.05992 0.75605 0.76979 0.73191 1.93581 1.71111 1.49478 1.83238 1.93673 1.42604 1.86283 1.72329 1.32244 1.15459 1.16750 1.09551 0.79531 1.23179 1.05712 0.97322 0.89375 1.21558 0.85904 0.87991 0.99591 0.86790 1.44268 1.27787 1.12631 1.49625 1.18234 0.80427 0.81840 0.79247 1.90926 1.42384 1.74981 1.39177 1.86315 1.45089 1.28947 1.68002 1.22321 0.98041 0.77875 0.92466 1.22483 0.97688 1.01191 1.02384 1.21899 0.94785 1.00081 1.02919 1.22494 1.03059 1.03987 0.94382 1.23665 0.98553 0.95612 0.99030 1.21586 1.03219 0.88515 0.97756 1.21209 0.90672 1.00625 1.00166 1.20597 0.95605 0.94218 0.97366 1.25290 0.94656 1.06883 0.91768 1.86498 1.38269 1.94959 1.16280 0.93772 0.79726 0.71968 0.86656 1.21097 0.98548 0.91977 1.01094 0.85643 0.88167 0.88200 0.86717 0.86472 0.74439 0.91537 0.89863 0.90972 0.91519 0.88566 0.91065 0.91336 0.89726 0.92286 0.86197 0.86205 0.80098 0.81145 0.86691 0.75194 1.22951 1.19886 0.83493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.20 9.15 113.37 1.04 1.23 16 2 S -0.15 -1.11 20.62 -56.49 -1.17 -2.27 16 3 C -0.07 -0.31 5.49 22.68 0.12 -0.19 16 4 C 0.06 0.14 4.63 22.60 0.10 0.25 16 5 O -0.67 -3.68 9.45 -62.77 -0.59 -4.28 16 6 S 2.58 11.72 5.10 -56.49 -0.29 11.43 16 7 O -0.98 -13.25 18.09 -118.57 -2.15 -15.40 16 8 O -0.95 -7.48 14.36 -118.57 -1.70 -9.19 16 9 C -0.63 4.31 3.85 31.12 0.12 4.43 16 10 H 0.19 -2.39 8.14 -2.39 -0.02 -2.41 16 11 C -0.12 0.89 7.42 31.12 0.23 1.12 16 12 C 0.16 -1.07 4.32 45.52 0.20 -0.87 16 13 H 0.11 -0.51 7.46 -2.38 -0.02 -0.53 16 14 N -0.68 4.15 5.27 -567.62 -2.99 1.15 16 15 C 0.65 0.23 8.06 129.79 1.05 1.27 16 16 O -0.58 -3.02 11.48 19.80 0.23 -2.79 16 17 O -0.37 -0.11 9.94 -55.50 -0.55 -0.67 16 18 C 0.13 -0.16 1.13 -10.79 -0.01 -0.17 16 19 C -0.18 0.35 8.37 71.98 0.60 0.96 16 20 C -0.14 0.70 8.85 71.98 0.64 1.34 16 21 C -0.18 0.03 8.37 71.98 0.60 0.64 16 22 C -0.13 1.12 5.12 31.12 0.16 1.28 16 23 C -0.09 0.50 6.70 22.34 0.15 0.64 16 24 C -0.11 0.78 8.66 22.29 0.19 0.98 16 25 C -0.07 0.32 5.39 -19.86 -0.11 0.21 16 26 C -0.08 0.40 2.82 71.24 0.20 0.60 16 27 O -0.55 2.22 12.76 -148.98 -1.90 0.32 16 28 Si 0.77 -5.25 29.78 68.60 2.04 -3.20 16 29 C -0.10 0.02 8.92 22.39 0.20 0.22 16 30 H 0.13 -0.47 8.14 -2.39 -0.02 -0.49 16 31 H 0.10 -0.41 7.75 -2.39 -0.02 -0.43 16 32 H 0.10 -0.30 7.75 -2.39 -0.02 -0.32 16 33 H 0.11 -1.16 8.14 -2.38 -0.02 -1.18 16 34 H 0.12 -0.94 8.10 -2.38 -0.02 -0.96 16 35 H 0.42 -4.32 8.81 -92.71 -0.82 -5.13 16 36 H 0.07 -0.21 8.14 -2.39 -0.02 -0.23 16 37 H 0.08 -0.36 8.14 -2.38 -0.02 -0.38 16 38 H 0.07 0.15 5.88 -2.38 -0.01 0.13 16 39 H 0.07 -0.30 8.14 -2.39 -0.02 -0.32 16 40 H 0.10 -0.74 8.14 -2.39 -0.02 -0.76 16 41 H 0.07 -0.39 8.14 -2.38 -0.02 -0.41 16 42 H 0.07 0.30 5.88 -2.39 -0.01 0.28 16 43 H 0.08 -0.25 8.14 -2.39 -0.02 -0.27 16 44 H 0.06 -0.01 8.14 -2.39 -0.02 -0.03 16 45 H 0.12 -0.97 7.53 -2.39 -0.02 -0.99 16 46 H 0.12 -1.52 5.96 -2.39 -0.01 -1.54 16 47 H 0.18 -2.29 6.56 -2.91 -0.02 -2.30 16 48 H 0.17 -2.24 4.86 -2.91 -0.01 -2.26 16 49 H 0.12 -0.51 7.96 -2.39 -0.02 -0.53 16 50 H 0.40 -4.64 8.70 -74.05 -0.64 -5.28 16 51 H -0.30 -0.58 7.11 99.48 0.71 0.13 16 52 H -0.27 0.94 7.11 99.48 0.71 1.64 16 53 H 0.15 -0.29 5.88 -2.91 -0.02 -0.30 16 Total: 0.00 -31.78 438.83 -4.03 -35.80 By element: Atomic # 1 Polarization: -24.42 SS G_CDS: -0.45 Total: -24.86 kcal Atomic # 6 Polarization: 8.46 SS G_CDS: 5.49 Total: 13.95 kcal Atomic # 7 Polarization: 4.15 SS G_CDS: -2.99 Total: 1.15 kcal Atomic # 8 Polarization: -25.33 SS G_CDS: -6.67 Total: -32.00 kcal Atomic # 14 Polarization: -5.25 SS G_CDS: 2.04 Total: -3.20 kcal Atomic # 16 Polarization: 10.61 SS G_CDS: -1.45 Total: 9.16 kcal Total: -31.78 -4.03 -35.80 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_13446746_17701012.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.230 kcal (2) G-P(sol) polarization free energy of solvation -31.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds