Wall clock time and date at job start Fri Mar 5 2021 23:52:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 C 1.76191 * 103.00213 * 2 1 4 4 C 1.39369 * 120.10004 * 179.97438 * 3 2 1 5 5 O 1.36016 * 120.07492 * 359.97438 * 4 3 2 6 6 S 1.52204 * 113.99908 * 270.38813 * 5 4 3 7 7 O 1.42096 * 104.27467 * 168.29146 * 6 5 4 8 8 O 1.42101 * 104.27387 * 40.43712 * 6 5 4 9 9 C 1.81402 * 104.45165 * 284.36290 * 6 5 4 10 10 H 1.09004 * 112.90676 * 315.68217 * 9 6 5 11 11 C 1.54051 * 113.61250 * 87.04444 * 9 6 5 12 12 C 1.53786 * 87.07512 * 89.07359 * 11 9 6 13 13 H 1.08996 * 113.68907 * 270.87212 * 12 11 9 14 14 C 1.50696 * 113.61619 * 139.97622 * 12 11 9 15 15 C 1.38236 * 119.99694 * 322.23292 * 14 12 11 16 16 C 1.38238 * 119.99624 * 179.78513 * 15 14 12 17 17 C 1.38235 * 120.00333 * 0.46587 * 16 15 14 18 18 C 1.38241 * 119.99674 * 359.76531 * 17 16 15 19 19 C 1.38229 * 120.00055 * 142.50533 * 14 12 11 20 20 C 1.53776 * 113.61291 * 184.43073 * 9 6 5 21 21 C 1.38478 * 119.84030 * 179.72321 * 4 3 2 22 22 C 1.38298 * 120.02529 * 0.25250 * 21 4 3 23 23 C 1.38274 * 120.19016 * 0.02562 * 22 21 4 24 24 C 1.50696 * 119.92082 * 179.97438 * 23 22 21 25 25 O 1.42899 * 109.47605 * 245.00478 * 24 23 22 26 26 Si 1.86307 * 109.46992 * 5.00172 * 24 23 22 27 27 C 1.38204 * 120.16351 * 0.02562 * 23 22 21 28 28 H 1.08996 * 109.46969 * 300.00336 * 1 2 3 29 29 H 1.08999 * 109.46792 * 60.00102 * 1 2 3 30 30 H 1.08992 * 109.47079 * 179.97438 * 1 2 3 31 31 H 1.09000 * 113.62102 * 334.52901 * 11 9 6 32 32 H 1.08997 * 113.69320 * 203.62795 * 11 9 6 33 33 H 1.07998 * 120.00237 * 359.97438 * 15 14 12 34 34 H 1.08009 * 119.99683 * 180.25142 * 16 15 14 35 35 H 1.07996 * 120.00037 * 179.79062 * 17 16 15 36 36 H 1.07991 * 119.99961 * 180.02562 * 18 17 16 37 37 H 1.07996 * 120.00369 * 359.97438 * 19 14 12 38 38 H 1.08997 * 113.61005 * 156.33925 * 20 9 6 39 39 H 1.08995 * 113.61539 * 25.51684 * 20 9 6 40 40 H 1.08008 * 119.99052 * 180.28181 * 21 4 3 41 41 H 1.07999 * 119.91158 * 180.02562 * 22 21 4 42 42 H 1.08993 * 109.47155 * 124.99924 * 24 23 22 43 43 H 0.96696 * 114.00370 * 179.97438 * 25 24 23 44 44 H 1.48494 * 109.99909 * 300.00001 * 26 24 23 45 45 H 1.48505 * 109.99793 * 61.31748 * 26 24 23 46 46 H 1.08001 * 120.01240 * 179.97438 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2105 1.7167 0.0000 4 6 3.5426 2.1265 0.0005 5 8 4.5401 1.2019 0.0016 6 16 4.9869 0.7749 1.3925 7 8 5.8061 -0.3633 1.1633 8 8 3.7781 0.6705 2.1322 9 6 5.9837 2.1657 1.9947 10 1 6.6758 2.5479 1.2443 11 6 5.1555 3.2634 2.6891 12 6 5.3598 2.4802 3.9967 13 1 4.5912 1.7301 4.1825 14 6 5.6208 3.3594 5.1925 15 6 6.3953 4.4965 5.0584 16 6 6.6311 5.3054 6.1544 17 6 6.1003 4.9720 7.3865 18 6 5.3298 3.8322 7.5215 19 6 5.0904 3.0257 6.4246 20 6 6.6384 1.9079 3.3620 21 6 3.8480 3.4771 -0.0053 22 6 2.8327 4.4162 -0.0063 23 6 1.5107 4.0110 -0.0010 24 6 0.4093 5.0395 -0.0016 25 8 -0.3239 4.9530 1.2219 26 14 1.1492 6.7417 -0.1631 27 6 1.1970 2.6651 0.0059 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 4.1170 3.3008 2.3603 32 1 5.6357 4.2419 2.6867 33 1 6.8137 4.7546 4.0968 34 1 7.2329 6.1960 6.0487 35 1 6.2873 5.6021 8.2434 36 1 4.9148 3.5719 8.4840 37 1 4.4887 2.1352 6.5303 38 1 7.5251 2.5153 3.5429 39 1 6.7977 0.8515 3.5776 40 1 4.8795 3.7974 -0.0095 41 1 3.0730 5.4691 -0.0113 42 1 -0.2609 4.8536 -0.8408 43 1 -1.0501 5.5878 1.2910 44 1 2.0651 7.0074 0.9751 45 1 1.8878 6.8547 -1.4465 46 1 0.1636 2.3513 0.0104 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV m_40_13446746_17781816.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 5 2021 23:52:00 Heat of formation + Delta-G solvation = -32.052380 kcal Electronic energy + Delta-G solvation = -33313.313061 eV Core-core repulsion = 28969.428433 eV Total energy + Delta-G solvation = -4343.884628 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 393.083 amu Computer time = 2.06 seconds Orbital eigenvalues (eV) -42.27442 -41.17503 -39.87367 -38.95518 -38.11567 -37.55434 -37.05454 -32.93580 -32.51239 -32.22208 -31.80790 -30.00242 -27.18933 -27.02094 -26.94245 -24.69514 -23.84600 -23.51650 -22.88542 -21.70282 -20.97784 -19.44999 -18.81195 -18.64775 -18.39490 -18.25432 -18.01625 -17.31188 -16.91733 -16.49986 -16.27372 -15.99232 -15.62264 -15.49514 -15.43483 -15.18683 -15.00416 -14.85798 -14.55629 -14.38454 -14.27372 -14.22923 -14.15227 -14.01431 -13.83377 -13.63453 -13.41824 -13.25088 -13.19690 -13.13014 -13.02328 -12.63893 -12.53267 -12.41898 -12.10940 -12.00187 -11.90986 -11.55287 -11.43965 -11.35153 -11.02181 -10.55627 -10.12734 -9.83931 -9.61488 -8.50909 -5.13567 -1.08220 -0.24486 -0.15067 0.28546 0.38784 0.48157 1.04349 1.06631 1.26015 1.48469 1.78610 2.05219 2.47878 2.68314 2.80161 3.03249 3.06652 3.27033 3.33414 3.49384 3.55411 3.63184 3.64789 3.81148 3.92237 3.94985 4.00518 4.04263 4.04771 4.08500 4.10265 4.21570 4.29357 4.34731 4.38128 4.43669 4.54907 4.55831 4.57657 4.60403 4.63955 4.68590 4.74113 4.82748 5.00743 5.01765 5.06799 5.13905 5.37708 5.54603 5.61721 5.68498 6.07291 6.42342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 S -0.065 6.065 3 C -0.057 4.057 4 C 0.080 3.920 5 O -0.655 6.655 6 S 2.600 3.400 7 O -0.920 6.920 8 O -0.926 6.926 9 C -0.663 4.663 10 H 0.149 0.851 11 C -0.094 4.094 12 C -0.089 4.089 13 H 0.118 0.882 14 C -0.070 4.070 15 C -0.119 4.119 16 C -0.118 4.118 17 C -0.122 4.122 18 C -0.116 4.116 19 C -0.112 4.112 20 C -0.086 4.086 21 C -0.092 4.092 22 C -0.120 4.120 23 C -0.032 4.032 24 C -0.077 4.077 25 O -0.542 6.542 26 Si 0.684 3.316 27 C -0.094 4.094 28 H 0.092 0.908 29 H 0.088 0.912 30 H 0.116 0.884 31 H 0.087 0.913 32 H 0.105 0.895 33 H 0.121 0.879 34 H 0.122 0.878 35 H 0.122 0.878 36 H 0.124 0.876 37 H 0.125 0.875 38 H 0.108 0.892 39 H 0.083 0.917 40 H 0.149 0.851 41 H 0.136 0.864 42 H 0.081 0.919 43 H 0.386 0.614 44 H -0.246 1.246 45 H -0.251 1.251 46 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.556 7.299 -0.477 8.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.323 4.323 2 S 0.182 5.818 3 C -0.173 4.173 4 C 0.031 3.969 5 O -0.613 6.613 6 S 2.693 3.307 7 O -0.918 6.918 8 O -0.925 6.925 9 C -0.769 4.769 10 H 0.167 0.833 11 C -0.132 4.132 12 C -0.108 4.108 13 H 0.136 0.864 14 C -0.070 4.070 15 C -0.136 4.136 16 C -0.136 4.136 17 C -0.140 4.140 18 C -0.134 4.134 19 C -0.130 4.130 20 C -0.124 4.124 21 C -0.114 4.114 22 C -0.141 4.141 23 C -0.035 4.035 24 C -0.188 4.188 25 O -0.349 6.349 26 Si 0.584 3.416 27 C -0.119 4.119 28 H 0.111 0.889 29 H 0.107 0.893 30 H 0.135 0.865 31 H 0.105 0.895 32 H 0.123 0.877 33 H 0.139 0.861 34 H 0.140 0.860 35 H 0.140 0.860 36 H 0.142 0.858 37 H 0.143 0.857 38 H 0.126 0.874 39 H 0.101 0.899 40 H 0.167 0.833 41 H 0.153 0.847 42 H 0.099 0.901 43 H 0.234 0.766 44 H -0.170 1.170 45 H -0.175 1.175 46 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -2.954 5.434 -0.647 6.218 hybrid contribution -0.110 0.991 -0.079 1.001 sum -3.063 6.425 -0.726 7.155 Atomic orbital electron populations 1.23856 0.94101 1.08073 1.06253 1.85910 1.07019 0.99578 1.89311 1.22051 0.94369 0.99465 1.01429 1.17253 0.83345 0.85980 1.10313 1.85754 1.56134 1.61966 1.57490 1.05647 0.75734 0.75918 0.73429 1.93655 1.70986 1.44681 1.82491 1.93706 1.41235 1.85481 1.72029 1.32680 1.15482 1.19547 1.09210 0.83322 1.22884 0.99749 0.96732 0.93788 1.21894 0.98475 0.98173 0.92221 0.86371 1.19509 0.97963 0.95495 0.94064 1.20994 0.98946 0.94824 0.98876 1.21159 0.99912 0.99607 0.92911 1.21218 0.97857 0.97273 0.97625 1.21206 0.98467 0.94966 0.98794 1.21131 0.99743 0.99887 0.92253 1.22645 0.98305 1.02943 0.88536 1.21107 1.01229 0.89916 0.99122 1.20752 0.91699 0.99087 1.02515 1.19436 0.93278 0.93657 0.97171 1.24742 0.96362 1.07326 0.90337 1.86502 1.49346 1.62871 1.36169 0.95038 0.85234 0.80404 0.80900 1.20972 0.98677 0.91388 1.00820 0.88864 0.89260 0.86511 0.89470 0.87679 0.86119 0.85978 0.85971 0.85821 0.85748 0.87376 0.89864 0.83344 0.84654 0.90129 0.76615 1.17003 1.17522 0.83734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.14 9.15 101.05 0.92 1.06 16 2 S -0.06 -0.23 20.60 -107.50 -2.21 -2.44 16 3 C -0.06 -0.19 5.48 -38.95 -0.21 -0.40 16 4 C 0.08 0.25 4.43 -39.07 -0.17 0.08 16 5 O -0.65 -2.66 9.45 -52.11 -0.49 -3.16 16 6 S 2.60 10.28 4.96 -107.50 -0.53 9.75 16 7 O -0.92 -6.76 18.09 -67.04 -1.21 -7.98 16 8 O -0.93 -4.69 13.33 -67.04 -0.89 -5.58 16 9 C -0.66 -0.09 3.87 -25.78 -0.10 -0.19 16 10 H 0.15 -0.35 8.14 -51.93 -0.42 -0.77 16 11 C -0.09 0.02 5.59 -25.77 -0.14 -0.13 16 12 C -0.09 -0.07 3.60 -90.96 -0.33 -0.40 16 13 H 0.12 0.15 7.11 -51.93 -0.37 -0.22 16 14 C -0.07 -0.09 5.29 -104.63 -0.55 -0.65 16 15 C -0.12 -0.08 8.60 -39.58 -0.34 -0.42 16 16 C -0.12 -0.08 10.05 -39.58 -0.40 -0.47 16 17 C -0.12 -0.10 10.05 -39.58 -0.40 -0.50 16 18 C -0.12 -0.12 10.05 -39.58 -0.40 -0.52 16 19 C -0.11 -0.17 9.71 -39.58 -0.38 -0.55 16 20 C -0.09 -0.01 7.14 -25.92 -0.19 -0.19 16 21 C -0.09 -0.07 6.85 -39.47 -0.27 -0.34 16 22 C -0.12 -0.06 8.66 -39.55 -0.34 -0.40 16 23 C -0.03 -0.02 5.38 -104.62 -0.56 -0.59 16 24 C -0.08 0.15 2.79 36.00 0.10 0.25 16 25 O -0.54 0.86 12.81 -35.23 -0.45 0.41 16 26 Si 0.68 -1.95 29.84 -169.99 -5.07 -7.02 16 27 C -0.09 -0.14 8.99 -39.39 -0.35 -0.49 16 28 H 0.09 -0.13 7.74 -51.93 -0.40 -0.53 16 29 H 0.09 -0.21 7.76 -51.92 -0.40 -0.61 16 30 H 0.12 -0.25 8.14 -51.93 -0.42 -0.68 16 31 H 0.09 0.04 5.97 -51.93 -0.31 -0.27 16 32 H 0.10 -0.20 6.32 -51.93 -0.33 -0.53 16 33 H 0.12 -0.14 6.68 -52.49 -0.35 -0.49 16 34 H 0.12 -0.13 8.06 -52.48 -0.42 -0.56 16 35 H 0.12 -0.11 8.06 -52.49 -0.42 -0.53 16 36 H 0.12 -0.08 8.06 -52.49 -0.42 -0.50 16 37 H 0.12 0.04 8.05 -52.49 -0.42 -0.38 16 38 H 0.11 -0.13 7.71 -51.93 -0.40 -0.53 16 39 H 0.08 0.00 8.10 -51.93 -0.42 -0.43 16 40 H 0.15 -0.34 7.58 -52.48 -0.40 -0.74 16 41 H 0.14 -0.13 4.85 -52.49 -0.25 -0.38 16 42 H 0.08 -0.30 7.96 -51.93 -0.41 -0.72 16 43 H 0.39 -2.51 8.74 45.56 0.40 -2.11 16 44 H -0.25 0.02 7.05 56.52 0.40 0.42 16 45 H -0.25 0.14 7.11 56.52 0.40 0.54 16 46 H 0.15 -0.06 5.88 -52.49 -0.31 -0.37 16 LS Contribution 389.84 15.07 5.87 5.87 Total: 0.00 -10.56 389.84 -14.81 -25.37 By element: Atomic # 1 Polarization: -4.68 SS G_CDS: -5.70 Total: -10.38 kcal Atomic # 6 Polarization: -0.72 SS G_CDS: -4.12 Total: -4.84 kcal Atomic # 8 Polarization: -13.26 SS G_CDS: -3.05 Total: -16.31 kcal Atomic # 14 Polarization: -1.95 SS G_CDS: -5.07 Total: -7.02 kcal Atomic # 16 Polarization: 10.06 SS G_CDS: -2.75 Total: 7.31 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -10.56 -14.81 -25.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_13446746_17781816.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.683 kcal (2) G-P(sol) polarization free energy of solvation -10.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -14.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.06 seconds