Wall clock time and date at job start Fri Mar 5 2021 23:51:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 C 1.76191 * 103.00213 * 2 1 4 4 C 1.39369 * 120.10004 * 179.97438 * 3 2 1 5 5 O 1.36016 * 120.07492 * 359.97438 * 4 3 2 6 6 S 1.52204 * 113.99908 * 270.38813 * 5 4 3 7 7 O 1.42096 * 104.27467 * 168.29146 * 6 5 4 8 8 O 1.42101 * 104.27387 * 40.43712 * 6 5 4 9 9 C 1.81402 * 104.45165 * 284.36290 * 6 5 4 10 10 H 1.09004 * 112.90676 * 315.68217 * 9 6 5 11 11 C 1.54051 * 113.61250 * 87.04444 * 9 6 5 12 12 C 1.53786 * 87.07512 * 89.07359 * 11 9 6 13 13 H 1.08996 * 113.68907 * 270.87212 * 12 11 9 14 14 C 1.50696 * 113.61619 * 139.97622 * 12 11 9 15 15 C 1.38236 * 119.99694 * 322.23292 * 14 12 11 16 16 C 1.38238 * 119.99624 * 179.78513 * 15 14 12 17 17 C 1.38235 * 120.00333 * 0.46587 * 16 15 14 18 18 C 1.38241 * 119.99674 * 359.76531 * 17 16 15 19 19 C 1.38229 * 120.00055 * 142.50533 * 14 12 11 20 20 C 1.53776 * 113.61291 * 184.43073 * 9 6 5 21 21 C 1.38478 * 119.84030 * 179.72321 * 4 3 2 22 22 C 1.38298 * 120.02529 * 0.25250 * 21 4 3 23 23 C 1.38274 * 120.19016 * 0.02562 * 22 21 4 24 24 C 1.50696 * 119.92082 * 179.97438 * 23 22 21 25 25 O 1.42899 * 109.47605 * 245.00478 * 24 23 22 26 26 Si 1.86307 * 109.46992 * 5.00172 * 24 23 22 27 27 C 1.38204 * 120.16351 * 0.02562 * 23 22 21 28 28 H 1.08996 * 109.46969 * 300.00336 * 1 2 3 29 29 H 1.08999 * 109.46792 * 60.00102 * 1 2 3 30 30 H 1.08992 * 109.47079 * 179.97438 * 1 2 3 31 31 H 1.09000 * 113.62102 * 334.52901 * 11 9 6 32 32 H 1.08997 * 113.69320 * 203.62795 * 11 9 6 33 33 H 1.07998 * 120.00237 * 359.97438 * 15 14 12 34 34 H 1.08009 * 119.99683 * 180.25142 * 16 15 14 35 35 H 1.07996 * 120.00037 * 179.79062 * 17 16 15 36 36 H 1.07991 * 119.99961 * 180.02562 * 18 17 16 37 37 H 1.07996 * 120.00369 * 359.97438 * 19 14 12 38 38 H 1.08997 * 113.61005 * 156.33925 * 20 9 6 39 39 H 1.08995 * 113.61539 * 25.51684 * 20 9 6 40 40 H 1.08008 * 119.99052 * 180.28181 * 21 4 3 41 41 H 1.07999 * 119.91158 * 180.02562 * 22 21 4 42 42 H 1.08993 * 109.47155 * 124.99924 * 24 23 22 43 43 H 0.96696 * 114.00370 * 179.97438 * 25 24 23 44 44 H 1.48494 * 109.99909 * 300.00001 * 26 24 23 45 45 H 1.48505 * 109.99793 * 61.31748 * 26 24 23 46 46 H 1.08001 * 120.01240 * 179.97438 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2105 1.7167 0.0000 4 6 3.5426 2.1265 0.0005 5 8 4.5401 1.2019 0.0016 6 16 4.9869 0.7749 1.3925 7 8 5.8061 -0.3633 1.1633 8 8 3.7781 0.6705 2.1322 9 6 5.9837 2.1657 1.9947 10 1 6.6758 2.5479 1.2443 11 6 5.1555 3.2634 2.6891 12 6 5.3598 2.4802 3.9967 13 1 4.5912 1.7301 4.1825 14 6 5.6208 3.3594 5.1925 15 6 6.3953 4.4965 5.0584 16 6 6.6311 5.3054 6.1544 17 6 6.1003 4.9720 7.3865 18 6 5.3298 3.8322 7.5215 19 6 5.0904 3.0257 6.4246 20 6 6.6384 1.9079 3.3620 21 6 3.8480 3.4771 -0.0053 22 6 2.8327 4.4162 -0.0063 23 6 1.5107 4.0110 -0.0010 24 6 0.4093 5.0395 -0.0016 25 8 -0.3239 4.9530 1.2219 26 14 1.1492 6.7417 -0.1631 27 6 1.1970 2.6651 0.0059 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 4.1170 3.3008 2.3603 32 1 5.6357 4.2419 2.6867 33 1 6.8137 4.7546 4.0968 34 1 7.2329 6.1960 6.0487 35 1 6.2873 5.6021 8.2434 36 1 4.9148 3.5719 8.4840 37 1 4.4887 2.1352 6.5303 38 1 7.5251 2.5153 3.5429 39 1 6.7977 0.8515 3.5776 40 1 4.8795 3.7974 -0.0095 41 1 3.0730 5.4691 -0.0113 42 1 -0.2609 4.8536 -0.8408 43 1 -1.0501 5.5878 1.2910 44 1 2.0651 7.0074 0.9751 45 1 1.8878 6.8547 -1.4465 46 1 0.1636 2.3513 0.0104 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_40_13446746_17781816.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 5 2021 23:51:59 Heat of formation + Delta-G solvation = -30.717035 kcal Electronic energy + Delta-G solvation = -33313.255156 eV Core-core repulsion = 28969.428433 eV Total energy + Delta-G solvation = -4343.826723 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 393.083 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.41463 -41.19875 -39.91784 -38.99498 -38.43040 -37.44561 -37.35157 -32.97820 -32.52525 -32.23846 -31.81115 -29.95858 -27.21333 -27.01460 -26.93685 -24.74584 -23.88402 -23.54808 -22.91728 -21.82995 -21.05478 -19.62530 -19.01206 -18.55122 -18.40757 -18.34615 -18.04496 -17.36813 -16.99458 -16.51617 -16.32087 -16.11366 -15.59700 -15.55186 -15.40452 -15.21058 -15.01413 -14.88648 -14.60738 -14.45708 -14.34277 -14.25640 -14.09334 -14.00249 -13.82878 -13.66625 -13.53262 -13.41915 -13.35812 -13.26614 -13.25011 -12.60542 -12.54633 -12.42158 -12.02469 -12.00127 -11.92719 -11.57139 -11.51166 -11.42250 -11.09093 -10.41990 -10.11675 -9.86037 -9.63748 -8.71173 -4.89827 -1.27775 -0.34619 -0.20606 0.17742 0.36573 0.45911 0.87005 1.16684 1.32116 1.69572 1.97526 2.01577 2.31274 2.54776 2.77140 2.98907 3.12017 3.22246 3.31632 3.48483 3.54227 3.63055 3.67729 3.84417 3.94102 4.00039 4.06112 4.11326 4.12606 4.14039 4.16618 4.25429 4.31054 4.39911 4.43097 4.47524 4.56312 4.57332 4.58332 4.59809 4.66330 4.72458 4.73510 4.76538 4.98087 5.02594 5.07794 5.13605 5.34794 5.53767 5.60468 5.65981 6.07614 6.89073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 S -0.142 6.142 3 C -0.068 4.068 4 C 0.054 3.946 5 O -0.663 6.663 6 S 2.592 3.408 7 O -0.969 6.969 8 O -0.948 6.948 9 C -0.642 4.642 10 H 0.183 0.817 11 C -0.089 4.089 12 C -0.097 4.097 13 H 0.102 0.898 14 C -0.078 4.078 15 C -0.123 4.123 16 C -0.125 4.125 17 C -0.133 4.133 18 C -0.128 4.128 19 C -0.133 4.133 20 C -0.089 4.089 21 C -0.089 4.089 22 C -0.126 4.126 23 C -0.041 4.041 24 C -0.086 4.086 25 O -0.561 6.561 26 Si 0.768 3.232 27 C -0.100 4.100 28 H 0.098 0.902 29 H 0.106 0.894 30 H 0.129 0.871 31 H 0.080 0.920 32 H 0.133 0.867 33 H 0.143 0.857 34 H 0.141 0.859 35 H 0.136 0.864 36 H 0.134 0.866 37 H 0.124 0.876 38 H 0.131 0.869 39 H 0.078 0.922 40 H 0.178 0.822 41 H 0.151 0.849 42 H 0.103 0.897 43 H 0.406 0.594 44 H -0.282 1.282 45 H -0.280 1.280 46 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.710 10.131 -0.733 11.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.305 4.305 2 S 0.104 5.896 3 C -0.184 4.184 4 C 0.006 3.994 5 O -0.622 6.622 6 S 2.690 3.310 7 O -0.967 6.967 8 O -0.947 6.947 9 C -0.751 4.751 10 H 0.200 0.800 11 C -0.127 4.127 12 C -0.115 4.115 13 H 0.121 0.879 14 C -0.078 4.078 15 C -0.141 4.141 16 C -0.143 4.143 17 C -0.151 4.151 18 C -0.146 4.146 19 C -0.151 4.151 20 C -0.127 4.127 21 C -0.110 4.110 22 C -0.146 4.146 23 C -0.044 4.044 24 C -0.195 4.195 25 O -0.372 6.372 26 Si 0.671 3.329 27 C -0.124 4.124 28 H 0.117 0.883 29 H 0.125 0.875 30 H 0.147 0.853 31 H 0.099 0.901 32 H 0.151 0.849 33 H 0.160 0.840 34 H 0.158 0.842 35 H 0.154 0.846 36 H 0.151 0.849 37 H 0.142 0.858 38 H 0.149 0.851 39 H 0.096 0.904 40 H 0.196 0.804 41 H 0.168 0.832 42 H 0.121 0.879 43 H 0.258 0.742 44 H -0.209 1.209 45 H -0.207 1.207 46 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -3.169 8.232 -0.913 8.868 hybrid contribution -0.106 0.204 0.049 0.236 sum -3.275 8.436 -0.864 9.091 Atomic orbital electron populations 1.23919 0.89959 1.09249 1.07352 1.86088 1.11781 1.01805 1.89946 1.22163 0.95137 0.98774 1.02336 1.17631 0.83227 0.86723 1.11807 1.85714 1.56542 1.62656 1.57273 1.05616 0.75527 0.76598 0.73220 1.93586 1.71728 1.48058 1.83332 1.93667 1.42435 1.86263 1.72314 1.32378 1.15247 1.17387 1.10135 0.79996 1.22994 0.99645 0.97486 0.92558 1.21895 0.98574 0.98219 0.92823 0.87937 1.19610 0.98294 0.95970 0.93914 1.21251 0.98589 0.94312 0.99931 1.21465 0.99855 1.00210 0.92783 1.21491 0.97744 0.97344 0.98500 1.21417 0.98778 0.95234 0.99177 1.21319 1.00458 1.00369 0.92942 1.22796 0.98779 1.03194 0.87931 1.21442 1.02923 0.88770 0.97824 1.21038 0.91728 0.99793 1.02043 1.19896 0.94449 0.94048 0.96026 1.24940 0.96388 1.07094 0.91093 1.86454 1.50379 1.64105 1.36228 0.94039 0.83387 0.78290 0.77135 1.21204 0.99001 0.91545 1.00691 0.88290 0.87494 0.85270 0.90148 0.84948 0.83970 0.84166 0.84580 0.84852 0.85804 0.85135 0.90354 0.80430 0.83230 0.87891 0.74179 1.20940 1.20667 0.82347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.15 9.15 113.37 1.04 1.19 16 2 S -0.14 -1.33 20.60 -56.49 -1.16 -2.50 16 3 C -0.07 -0.55 5.48 22.68 0.12 -0.43 16 4 C 0.05 0.40 4.43 22.60 0.10 0.50 16 5 O -0.66 -6.66 9.45 -62.82 -0.59 -7.25 16 6 S 2.59 25.80 4.96 -56.49 -0.28 25.52 16 7 O -0.97 -17.21 18.09 -118.57 -2.15 -19.36 16 8 O -0.95 -12.37 13.33 -118.57 -1.58 -13.95 16 9 C -0.64 0.14 3.87 31.21 0.12 0.26 16 10 H 0.18 -1.26 8.14 -2.39 -0.02 -1.28 16 11 C -0.09 0.12 5.59 31.21 0.17 0.29 16 12 C -0.10 -0.19 3.60 -11.01 -0.04 -0.23 16 13 H 0.10 0.49 7.11 -2.39 -0.02 0.48 16 14 C -0.08 -0.20 5.29 -19.87 -0.11 -0.30 16 15 C -0.12 0.02 8.60 22.27 0.19 0.21 16 16 C -0.13 0.00 10.05 22.27 0.22 0.23 16 17 C -0.13 -0.15 10.05 22.27 0.22 0.08 16 18 C -0.13 -0.32 10.05 22.27 0.22 -0.09 16 19 C -0.13 -0.52 9.71 22.27 0.22 -0.30 16 20 C -0.09 0.02 7.14 31.12 0.22 0.24 16 21 C -0.09 -0.09 6.85 22.34 0.15 0.07 16 22 C -0.13 -0.03 8.66 22.29 0.19 0.16 16 23 C -0.04 -0.04 5.38 -19.87 -0.11 -0.15 16 24 C -0.09 0.45 2.79 71.23 0.20 0.65 16 25 O -0.56 2.55 12.81 -148.98 -1.91 0.64 16 26 Si 0.77 -5.46 29.84 68.60 2.05 -3.41 16 27 C -0.10 -0.33 8.99 22.40 0.20 -0.12 16 28 H 0.10 -0.23 7.74 -2.39 -0.02 -0.25 16 29 H 0.11 -0.52 7.76 -2.39 -0.02 -0.54 16 30 H 0.13 -0.50 8.14 -2.39 -0.02 -0.52 16 31 H 0.08 0.06 5.97 -2.39 -0.01 0.04 16 32 H 0.13 -0.88 6.32 -2.39 -0.02 -0.89 16 33 H 0.14 -0.74 6.68 -2.91 -0.02 -0.76 16 34 H 0.14 -0.59 8.06 -2.91 -0.02 -0.62 16 35 H 0.14 -0.35 8.06 -2.91 -0.02 -0.37 16 36 H 0.13 -0.09 8.06 -2.91 -0.02 -0.11 16 37 H 0.12 0.33 8.05 -2.91 -0.02 0.31 16 38 H 0.13 -0.58 7.71 -2.39 -0.02 -0.59 16 39 H 0.08 0.08 8.10 -2.39 -0.02 0.06 16 40 H 0.18 -1.11 7.58 -2.91 -0.02 -1.14 16 41 H 0.15 -0.48 4.85 -2.91 -0.01 -0.49 16 42 H 0.10 -1.00 7.96 -2.39 -0.02 -1.02 16 43 H 0.41 -6.02 8.74 -74.06 -0.65 -6.67 16 44 H -0.28 0.28 7.05 99.48 0.70 0.98 16 45 H -0.28 0.62 7.11 99.48 0.71 1.33 16 46 H 0.16 -0.14 5.88 -2.91 -0.02 -0.16 16 Total: 0.00 -28.40 389.84 -1.86 -30.25 By element: Atomic # 1 Polarization: -12.62 SS G_CDS: 0.41 Total: -12.20 kcal Atomic # 6 Polarization: -1.09 SS G_CDS: 3.35 Total: 2.26 kcal Atomic # 8 Polarization: -33.69 SS G_CDS: -6.23 Total: -39.92 kcal Atomic # 14 Polarization: -5.46 SS G_CDS: 2.05 Total: -3.41 kcal Atomic # 16 Polarization: 24.46 SS G_CDS: -1.44 Total: 23.02 kcal Total: -28.40 -1.86 -30.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_13446746_17781816.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.464 kcal (2) G-P(sol) polarization free energy of solvation -28.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds