Wall clock time and date at job start Fri Mar 5 2021 23:27:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35991 * 117.00364 * 2 1 4 4 C 1.39151 * 120.07619 * 179.72796 * 3 2 1 5 5 O 1.36002 * 120.06937 * 0.02562 * 4 3 2 6 6 S 1.52196 * 113.99814 * 90.00157 * 5 4 3 7 7 O 1.42106 * 104.27274 * 191.07041 * 6 5 4 8 8 O 1.42099 * 104.28159 * 318.92483 * 6 5 4 9 9 C 1.81397 * 104.45314 * 75.00110 * 6 5 4 10 10 C 1.52993 * 109.47539 * 179.97438 * 9 6 5 11 11 C 1.52997 * 109.47848 * 179.97438 * 10 9 6 12 12 Si 1.86295 * 109.47708 * 179.97438 * 11 10 9 13 13 C 1.86304 * 109.47011 * 60.00006 * 12 11 10 14 14 C 1.86301 * 109.47072 * 179.97438 * 12 11 10 15 15 C 1.86295 * 109.47084 * 300.00251 * 12 11 10 16 16 C 1.38559 * 119.85592 * 179.72039 * 4 3 2 17 17 C 1.38247 * 119.99995 * 0.55606 * 16 4 3 18 18 C 1.50697 * 119.92893 * 179.74231 * 17 16 4 19 19 O 1.42904 * 109.46807 * 104.97894 * 18 17 16 20 20 Si 1.86296 * 109.47037 * 344.97555 * 18 17 16 21 21 H 1.48492 * 109.47416 * 299.99809 * 20 18 17 22 22 H 1.48504 * 109.47138 * 60.00299 * 20 18 17 23 23 H 1.48505 * 109.46897 * 179.97438 * 20 18 17 24 24 C 1.38254 * 120.14265 * 359.71512 * 17 16 4 25 25 C 1.50700 * 119.92546 * 179.97438 * 24 17 16 26 26 C 1.38239 * 120.14652 * 0.02562 * 24 17 16 27 27 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46938 * 59.99845 * 1 2 3 29 29 H 1.09004 * 109.46926 * 299.99967 * 1 2 3 30 30 H 1.09007 * 109.46508 * 299.99513 * 9 6 5 31 31 H 1.09001 * 109.47456 * 59.99194 * 9 6 5 32 32 H 1.08998 * 109.46959 * 299.99964 * 10 9 6 33 33 H 1.09001 * 109.47353 * 59.99194 * 10 9 6 34 34 H 1.09004 * 109.46670 * 300.00366 * 11 10 9 35 35 H 1.09001 * 109.47022 * 59.99333 * 11 10 9 36 36 H 1.08998 * 109.46844 * 60.00144 * 13 12 11 37 37 H 1.09002 * 109.46986 * 179.97438 * 13 12 11 38 38 H 1.09004 * 109.46917 * 300.00150 * 13 12 11 39 39 H 1.08999 * 109.46890 * 60.00076 * 14 12 11 40 40 H 1.09004 * 109.46725 * 179.97438 * 14 12 11 41 41 H 1.08994 * 109.47092 * 299.99608 * 14 12 11 42 42 H 1.08998 * 109.47731 * 59.99698 * 15 12 11 43 43 H 1.08996 * 109.47272 * 180.02562 * 15 12 11 44 44 H 1.09003 * 109.47317 * 299.99591 * 15 12 11 45 45 H 1.08001 * 120.00429 * 180.27535 * 16 4 3 46 46 H 1.08996 * 109.46996 * 224.97511 * 18 17 16 47 47 H 0.96702 * 113.99362 * 179.97438 * 19 18 17 48 48 H 1.09003 * 109.47268 * 270.02205 * 25 24 17 49 49 H 1.08999 * 109.47143 * 30.02542 * 25 24 17 50 50 H 1.09002 * 109.47287 * 150.02618 * 25 24 17 51 51 H 1.08008 * 120.00118 * 180.02562 * 26 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 3.4360 1.2862 0.0057 5 8 4.1795 0.1475 0.0108 6 16 4.5238 -0.3732 -1.3773 7 8 5.0544 -1.6705 -1.1432 8 8 3.3288 -0.1944 -2.1251 9 6 5.8206 0.7470 -1.9722 10 6 6.2569 0.3225 -3.3758 11 6 7.3503 1.2676 -3.8779 12 14 7.8821 0.7502 -5.5867 13 6 6.4209 0.8225 -6.7403 14 6 9.2128 1.9016 -6.1983 15 6 8.5435 -0.9905 -5.5308 16 6 4.0604 2.5232 -0.0002 17 6 3.3031 3.6798 -0.0001 18 6 3.9839 5.0242 -0.0006 19 8 3.8878 5.6062 -1.3022 20 14 5.7780 4.8119 0.4540 21 1 5.8778 4.2072 1.8065 22 1 6.4376 3.9227 -0.5357 23 1 6.4490 6.1367 0.4529 24 6 1.9225 3.6057 -0.0001 25 6 1.1018 4.8696 0.0006 26 6 1.2934 2.3748 0.0004 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 0.5139 0.8900 30 1 5.4342 1.7658 -2.0041 31 1 6.6758 0.7038 -1.2976 32 1 6.6434 -0.6962 -3.3436 33 1 5.4020 0.3654 -4.0506 34 1 6.9633 2.2862 -3.9102 35 1 8.2053 1.2251 -3.2032 36 1 6.0339 1.8409 -6.7730 37 1 6.7321 0.5201 -7.7402 38 1 5.6420 0.1491 -6.3826 39 1 10.0678 1.8597 -5.5234 40 1 9.5243 1.5985 -7.1979 41 1 8.8254 2.9198 -6.2311 42 1 7.7647 -1.6639 -5.1732 43 1 8.8551 -1.2931 -6.5305 44 1 9.3984 -1.0328 -4.8559 45 1 5.1387 2.5838 -0.0002 46 1 3.4997 5.6769 0.7258 47 1 4.3053 6.4753 -1.3762 48 1 0.9043 5.1740 1.0285 49 1 1.6502 5.6591 -0.5132 50 1 0.1573 4.6898 -0.5129 51 1 0.2147 2.3196 0.0000 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV m_40_14060150_14927650.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 5 2021 23:27:45 Heat of formation + Delta-G solvation = -197.110415 kcal Electronic energy + Delta-G solvation = -32223.187632 eV Core-core repulsion = 27953.461233 eV Total energy + Delta-G solvation = -4269.726399 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 376.143 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.46581 -40.23046 -39.45281 -38.04742 -37.34869 -36.93996 -35.91581 -33.45357 -32.32263 -29.72113 -28.99479 -28.52188 -28.40984 -28.38403 -28.09532 -26.08774 -23.99305 -23.00961 -22.72296 -21.13412 -19.45005 -18.92086 -18.77477 -18.57813 -18.19160 -17.40696 -16.82241 -16.70961 -16.39821 -16.12762 -15.70796 -15.34205 -15.25618 -14.87969 -14.81268 -14.76171 -14.38217 -14.25473 -14.14201 -14.06698 -13.83212 -13.65484 -13.59628 -13.46121 -13.31398 -13.24751 -13.15686 -13.09346 -13.08586 -13.07157 -13.02162 -12.99526 -12.86946 -12.49177 -12.33929 -12.19860 -12.03520 -11.94711 -11.87557 -11.73564 -10.83525 -10.79829 -10.53233 -10.52018 -10.09463 -9.34572 -0.93180 -0.10003 0.01750 0.93703 1.15579 1.24601 1.31578 1.72471 1.73637 1.84886 1.86355 2.02817 2.18419 2.58948 2.73866 3.05460 3.14393 3.39733 3.45913 3.57383 3.66920 3.70839 3.82533 3.87615 4.06137 4.09084 4.13293 4.19058 4.21948 4.29616 4.50344 4.55008 4.56723 4.57356 4.64056 4.67110 4.70687 4.71341 4.73878 4.76181 4.77099 4.78160 4.80412 4.90233 4.94658 5.06659 5.26980 5.28577 5.38529 5.46344 5.55127 5.57406 6.13257 6.40677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.297 6.297 3 C 0.176 3.824 4 C 0.028 3.972 5 O -0.650 6.650 6 S 2.581 3.419 7 O -0.926 6.926 8 O -0.941 6.941 9 C -0.655 4.655 10 C -0.099 4.099 11 C -0.407 4.407 12 Si 1.001 2.999 13 C -0.453 4.453 14 C -0.448 4.448 15 C -0.453 4.453 16 C -0.093 4.093 17 C -0.101 4.101 18 C -0.073 4.073 19 O -0.541 6.541 20 Si 0.922 3.078 21 H -0.242 1.242 22 H -0.244 1.244 23 H -0.247 1.247 24 C 0.007 3.993 25 C -0.127 4.127 26 C -0.198 4.198 27 H 0.108 0.892 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.135 0.865 31 H 0.138 0.862 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.069 0.931 41 H 0.068 0.932 42 H 0.070 0.930 43 H 0.070 0.930 44 H 0.069 0.931 45 H 0.144 0.856 46 H 0.083 0.917 47 H 0.382 0.618 48 H 0.080 0.920 49 H 0.087 0.913 50 H 0.074 0.926 51 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.152 7.392 0.665 7.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.209 6.209 3 C 0.126 3.874 4 C -0.015 4.015 5 O -0.609 6.609 6 S 2.677 3.323 7 O -0.924 6.924 8 O -0.939 6.939 9 C -0.782 4.782 10 C -0.138 4.138 11 C -0.493 4.493 12 Si 1.198 2.802 13 C -0.560 4.560 14 C -0.556 4.556 15 C -0.560 4.560 16 C -0.112 4.112 17 C -0.101 4.101 18 C -0.183 4.183 19 O -0.347 6.347 20 Si 0.744 3.256 21 H -0.165 1.165 22 H -0.167 1.167 23 H -0.170 1.170 24 C 0.006 3.994 25 C -0.184 4.184 26 C -0.217 4.217 27 H 0.126 0.874 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.153 0.847 31 H 0.156 0.844 32 H 0.101 0.899 33 H 0.101 0.899 34 H 0.100 0.900 35 H 0.099 0.901 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.088 0.912 45 H 0.161 0.839 46 H 0.101 0.899 47 H 0.230 0.770 48 H 0.099 0.901 49 H 0.106 0.894 50 H 0.093 0.907 51 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -0.916 5.854 1.002 6.010 hybrid contribution 0.251 0.941 -0.006 0.974 sum -0.666 6.795 0.996 6.900 Atomic orbital electron populations 1.23271 0.76994 1.05119 1.01877 1.86195 1.22545 1.25308 1.86822 1.18993 0.90242 0.85950 0.92165 1.16967 0.86336 0.82035 1.16151 1.85756 1.71765 1.45933 1.57409 1.06009 0.76458 0.76179 0.73692 1.93644 1.81356 1.34858 1.82515 1.93647 1.42318 1.86214 1.71716 1.31010 1.19803 1.18062 1.09316 1.20947 1.00501 1.00756 0.91564 1.26185 1.01861 1.03250 1.17968 0.79347 0.67312 0.67349 0.66242 1.26165 1.14458 1.04631 1.10743 1.26093 1.12645 1.10596 1.06242 1.26170 1.06647 1.18633 1.04597 1.21052 1.00756 0.90157 0.99271 1.18765 0.92974 0.92589 1.05791 1.24543 1.10652 0.93786 0.89344 1.86531 1.81648 1.37989 1.28520 0.86093 0.75521 0.82302 0.81702 1.16475 1.16723 1.17048 1.19761 0.92787 0.95235 0.91621 1.21015 0.99676 0.94494 1.03170 1.21161 1.00911 0.90536 1.09063 0.87351 0.91703 0.91984 0.84688 0.84414 0.89949 0.89883 0.90000 0.90085 0.91137 0.91136 0.91086 0.91279 0.91151 0.91245 0.91068 0.91120 0.91163 0.83870 0.89900 0.77040 0.90111 0.89401 0.90707 0.83331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.01 9.81 101.05 0.99 0.98 16 2 O -0.30 -1.23 9.73 -41.49 -0.40 -1.63 16 3 C 0.18 0.63 5.93 -39.12 -0.23 0.40 16 4 C 0.03 0.11 4.81 -39.12 -0.19 -0.08 16 5 O -0.65 -3.08 9.84 -54.24 -0.53 -3.61 16 6 S 2.58 11.66 5.17 -107.50 -0.56 11.11 16 7 O -0.93 -6.94 18.09 -67.04 -1.21 -8.15 16 8 O -0.94 -5.94 15.82 -68.53 -1.08 -7.03 16 9 C -0.66 -0.42 5.45 37.15 0.20 -0.21 16 10 C -0.10 -0.02 4.59 -26.74 -0.12 -0.14 16 11 C -0.41 0.52 4.45 37.16 0.17 0.69 16 12 Si 1.00 -2.12 12.19 -169.99 -2.07 -4.19 16 13 C -0.45 0.38 8.65 101.05 0.87 1.26 16 14 C -0.45 0.58 8.65 101.05 0.87 1.46 16 15 C -0.45 0.37 8.65 101.05 0.87 1.24 16 16 C -0.09 -0.15 7.06 -39.46 -0.28 -0.43 16 17 C -0.10 -0.05 5.29 -104.61 -0.55 -0.60 16 18 C -0.07 0.15 1.87 36.00 0.07 0.22 16 19 O -0.54 1.14 11.90 -35.23 -0.42 0.72 16 20 Si 0.92 -1.61 25.49 -169.99 -4.33 -5.95 16 21 H -0.24 0.20 7.11 56.52 0.40 0.60 16 22 H -0.24 0.31 6.73 56.52 0.38 0.69 16 23 H -0.25 0.46 7.11 56.52 0.40 0.86 16 24 C 0.01 0.00 5.88 -104.62 -0.62 -0.61 16 25 C -0.13 0.31 9.32 36.01 0.34 0.65 16 26 C -0.20 -0.15 8.69 -39.46 -0.34 -0.49 16 27 H 0.11 -0.20 8.14 -51.93 -0.42 -0.63 16 28 H 0.06 -0.10 7.66 -51.93 -0.40 -0.50 16 29 H 0.06 -0.16 7.66 -51.93 -0.40 -0.56 16 30 H 0.13 -0.09 6.58 -51.92 -0.34 -0.44 16 31 H 0.14 -0.20 8.14 -51.92 -0.42 -0.63 16 32 H 0.08 -0.05 7.79 -51.93 -0.40 -0.46 16 33 H 0.08 -0.05 7.79 -51.93 -0.40 -0.46 16 34 H 0.08 -0.14 7.96 -51.93 -0.41 -0.55 16 35 H 0.08 -0.15 7.96 -51.93 -0.41 -0.57 16 36 H 0.07 -0.06 7.96 -51.93 -0.41 -0.48 16 37 H 0.07 -0.06 7.96 -51.93 -0.41 -0.47 16 38 H 0.07 -0.04 7.79 -51.93 -0.40 -0.45 16 39 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 40 H 0.07 -0.08 7.96 -51.93 -0.41 -0.49 16 41 H 0.07 -0.09 7.96 -51.93 -0.41 -0.51 16 42 H 0.07 -0.04 7.79 -51.93 -0.40 -0.45 16 43 H 0.07 -0.06 7.96 -51.93 -0.41 -0.47 16 44 H 0.07 -0.06 7.96 -51.93 -0.41 -0.48 16 45 H 0.14 -0.06 4.28 -52.49 -0.22 -0.29 16 46 H 0.08 -0.35 7.38 -51.93 -0.38 -0.73 16 47 H 0.38 -2.43 8.74 45.56 0.40 -2.03 16 48 H 0.08 -0.30 8.14 -51.93 -0.42 -0.72 16 49 H 0.09 -0.22 6.19 -51.93 -0.32 -0.54 16 50 H 0.07 -0.23 8.08 -51.93 -0.42 -0.65 16 51 H 0.15 -0.29 6.30 -52.48 -0.33 -0.62 16 LS Contribution 418.42 15.07 6.31 6.31 Total: 0.00 -10.51 418.42 -10.10 -20.61 By element: Atomic # 1 Polarization: -4.66 SS G_CDS: -7.84 Total: -12.50 kcal Atomic # 6 Polarization: 2.26 SS G_CDS: 2.05 Total: 4.31 kcal Atomic # 8 Polarization: -16.04 SS G_CDS: -3.65 Total: -19.70 kcal Atomic # 14 Polarization: -3.73 SS G_CDS: -6.41 Total: -10.14 kcal Atomic # 16 Polarization: 11.66 SS G_CDS: -0.56 Total: 11.11 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -10.51 -10.10 -20.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_14060150_14927650.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -176.498 kcal (2) G-P(sol) polarization free energy of solvation -10.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds