Wall clock time and date at job start Fri Mar 5 2021 23:27:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35991 * 117.00364 * 2 1 4 4 C 1.39151 * 120.07619 * 179.72796 * 3 2 1 5 5 O 1.36002 * 120.06937 * 0.02562 * 4 3 2 6 6 S 1.52196 * 113.99814 * 90.00157 * 5 4 3 7 7 O 1.42106 * 104.27274 * 191.07041 * 6 5 4 8 8 O 1.42099 * 104.28159 * 318.92483 * 6 5 4 9 9 C 1.81397 * 104.45314 * 75.00110 * 6 5 4 10 10 C 1.52993 * 109.47539 * 179.97438 * 9 6 5 11 11 C 1.52997 * 109.47848 * 179.97438 * 10 9 6 12 12 Si 1.86295 * 109.47708 * 179.97438 * 11 10 9 13 13 C 1.86304 * 109.47011 * 60.00006 * 12 11 10 14 14 C 1.86301 * 109.47072 * 179.97438 * 12 11 10 15 15 C 1.86295 * 109.47084 * 300.00251 * 12 11 10 16 16 C 1.38559 * 119.85592 * 179.72039 * 4 3 2 17 17 C 1.38247 * 119.99995 * 0.55606 * 16 4 3 18 18 C 1.50697 * 119.92893 * 179.74231 * 17 16 4 19 19 O 1.42904 * 109.46807 * 104.97894 * 18 17 16 20 20 Si 1.86296 * 109.47037 * 344.97555 * 18 17 16 21 21 H 1.48492 * 109.47416 * 299.99809 * 20 18 17 22 22 H 1.48504 * 109.47138 * 60.00299 * 20 18 17 23 23 H 1.48505 * 109.46897 * 179.97438 * 20 18 17 24 24 C 1.38254 * 120.14265 * 359.71512 * 17 16 4 25 25 C 1.50700 * 119.92546 * 179.97438 * 24 17 16 26 26 C 1.38239 * 120.14652 * 0.02562 * 24 17 16 27 27 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46938 * 59.99845 * 1 2 3 29 29 H 1.09004 * 109.46926 * 299.99967 * 1 2 3 30 30 H 1.09007 * 109.46508 * 299.99513 * 9 6 5 31 31 H 1.09001 * 109.47456 * 59.99194 * 9 6 5 32 32 H 1.08998 * 109.46959 * 299.99964 * 10 9 6 33 33 H 1.09001 * 109.47353 * 59.99194 * 10 9 6 34 34 H 1.09004 * 109.46670 * 300.00366 * 11 10 9 35 35 H 1.09001 * 109.47022 * 59.99333 * 11 10 9 36 36 H 1.08998 * 109.46844 * 60.00144 * 13 12 11 37 37 H 1.09002 * 109.46986 * 179.97438 * 13 12 11 38 38 H 1.09004 * 109.46917 * 300.00150 * 13 12 11 39 39 H 1.08999 * 109.46890 * 60.00076 * 14 12 11 40 40 H 1.09004 * 109.46725 * 179.97438 * 14 12 11 41 41 H 1.08994 * 109.47092 * 299.99608 * 14 12 11 42 42 H 1.08998 * 109.47731 * 59.99698 * 15 12 11 43 43 H 1.08996 * 109.47272 * 180.02562 * 15 12 11 44 44 H 1.09003 * 109.47317 * 299.99591 * 15 12 11 45 45 H 1.08001 * 120.00429 * 180.27535 * 16 4 3 46 46 H 1.08996 * 109.46996 * 224.97511 * 18 17 16 47 47 H 0.96702 * 113.99362 * 179.97438 * 19 18 17 48 48 H 1.09003 * 109.47268 * 270.02205 * 25 24 17 49 49 H 1.08999 * 109.47143 * 30.02542 * 25 24 17 50 50 H 1.09002 * 109.47287 * 150.02618 * 25 24 17 51 51 H 1.08008 * 120.00118 * 180.02562 * 26 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 3.4360 1.2862 0.0057 5 8 4.1795 0.1475 0.0108 6 16 4.5238 -0.3732 -1.3773 7 8 5.0544 -1.6705 -1.1432 8 8 3.3288 -0.1944 -2.1251 9 6 5.8206 0.7470 -1.9722 10 6 6.2569 0.3225 -3.3758 11 6 7.3503 1.2676 -3.8779 12 14 7.8821 0.7502 -5.5867 13 6 6.4209 0.8225 -6.7403 14 6 9.2128 1.9016 -6.1983 15 6 8.5435 -0.9905 -5.5308 16 6 4.0604 2.5232 -0.0002 17 6 3.3031 3.6798 -0.0001 18 6 3.9839 5.0242 -0.0006 19 8 3.8878 5.6062 -1.3022 20 14 5.7780 4.8119 0.4540 21 1 5.8778 4.2072 1.8065 22 1 6.4376 3.9227 -0.5357 23 1 6.4490 6.1367 0.4529 24 6 1.9225 3.6057 -0.0001 25 6 1.1018 4.8696 0.0006 26 6 1.2934 2.3748 0.0004 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 0.5139 0.8900 30 1 5.4342 1.7658 -2.0041 31 1 6.6758 0.7038 -1.2976 32 1 6.6434 -0.6962 -3.3436 33 1 5.4020 0.3654 -4.0506 34 1 6.9633 2.2862 -3.9102 35 1 8.2053 1.2251 -3.2032 36 1 6.0339 1.8409 -6.7730 37 1 6.7321 0.5201 -7.7402 38 1 5.6420 0.1491 -6.3826 39 1 10.0678 1.8597 -5.5234 40 1 9.5243 1.5985 -7.1979 41 1 8.8254 2.9198 -6.2311 42 1 7.7647 -1.6639 -5.1732 43 1 8.8551 -1.2931 -6.5305 44 1 9.3984 -1.0328 -4.8559 45 1 5.1387 2.5838 -0.0002 46 1 3.4997 5.6769 0.7258 47 1 4.3053 6.4753 -1.3762 48 1 0.9043 5.1740 1.0285 49 1 1.6502 5.6591 -0.5132 50 1 0.1573 4.6898 -0.5129 51 1 0.2147 2.3196 0.0000 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_40_14060150_14927650.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 5 2021 23:27:43 Heat of formation + Delta-G solvation = -195.839747 kcal Electronic energy + Delta-G solvation = -32223.132531 eV Core-core repulsion = 27953.461233 eV Total energy + Delta-G solvation = -4269.671299 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 376.143 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.58321 -40.36308 -39.44630 -38.43938 -37.34451 -37.17130 -35.92336 -33.42584 -32.30697 -29.64158 -28.93988 -28.44903 -28.32100 -28.29025 -28.05602 -26.01590 -24.00913 -23.07700 -22.70661 -21.25257 -19.66855 -19.09518 -18.88333 -18.45798 -18.26796 -17.55767 -16.90728 -16.76379 -16.33671 -16.10412 -15.74734 -15.41187 -15.28430 -14.79471 -14.77487 -14.64474 -14.26388 -14.18099 -14.06506 -14.04372 -13.99625 -13.61396 -13.56686 -13.48317 -13.41671 -13.34608 -13.23450 -13.15413 -13.07548 -13.02441 -12.99642 -12.99223 -12.84185 -12.42083 -12.26646 -12.08828 -11.97027 -11.89212 -11.86423 -11.71326 -10.72534 -10.70031 -10.46458 -10.29493 -10.10662 -9.41391 -1.15335 -0.17337 -0.03325 0.92865 1.12534 1.41694 1.46967 1.87874 1.89042 1.99431 2.00705 2.02073 2.16650 2.46900 2.71518 2.82526 3.25337 3.37988 3.49082 3.58333 3.66058 3.77748 3.87062 3.94469 4.11018 4.14798 4.21993 4.31164 4.34097 4.45132 4.55622 4.60177 4.64661 4.65723 4.71191 4.74659 4.80659 4.82605 4.85402 4.85689 4.86594 4.86718 4.87155 4.94195 5.04333 5.18124 5.34404 5.41641 5.47637 5.58261 5.65366 5.65911 6.09602 6.87110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.330 6.330 3 C 0.150 3.850 4 C -0.005 4.005 5 O -0.660 6.660 6 S 2.572 3.428 7 O -0.970 6.970 8 O -0.969 6.969 9 C -0.635 4.635 10 C -0.117 4.117 11 C -0.415 4.415 12 Si 1.067 2.933 13 C -0.472 4.472 14 C -0.459 4.459 15 C -0.473 4.473 16 C -0.100 4.100 17 C -0.106 4.106 18 C -0.066 4.066 19 O -0.553 6.553 20 Si 0.932 3.068 21 H -0.261 1.261 22 H -0.251 1.251 23 H -0.241 1.241 24 C 0.007 3.993 25 C -0.126 4.126 26 C -0.199 4.199 27 H 0.115 0.885 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.152 0.848 31 H 0.162 0.838 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.072 0.928 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.070 0.930 40 H 0.067 0.933 41 H 0.071 0.929 42 H 0.065 0.935 43 H 0.068 0.932 44 H 0.071 0.929 45 H 0.157 0.843 46 H 0.110 0.890 47 H 0.401 0.599 48 H 0.098 0.902 49 H 0.092 0.908 50 H 0.082 0.918 51 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.101 10.175 0.639 10.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.243 6.243 3 C 0.101 3.899 4 C -0.048 4.048 5 O -0.619 6.619 6 S 2.673 3.327 7 O -0.969 6.969 8 O -0.967 6.967 9 C -0.765 4.765 10 C -0.156 4.156 11 C -0.500 4.500 12 Si 1.260 2.740 13 C -0.578 4.578 14 C -0.566 4.566 15 C -0.579 4.579 16 C -0.120 4.120 17 C -0.107 4.107 18 C -0.177 4.177 19 O -0.363 6.363 20 Si 0.756 3.244 21 H -0.185 1.185 22 H -0.175 1.175 23 H -0.165 1.165 24 C 0.006 3.994 25 C -0.182 4.182 26 C -0.217 4.217 27 H 0.133 0.867 28 H 0.092 0.908 29 H 0.101 0.899 30 H 0.170 0.830 31 H 0.180 0.820 32 H 0.104 0.896 33 H 0.105 0.895 34 H 0.110 0.890 35 H 0.110 0.890 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.089 0.911 40 H 0.086 0.914 41 H 0.091 0.909 42 H 0.084 0.916 43 H 0.087 0.913 44 H 0.090 0.910 45 H 0.174 0.826 46 H 0.128 0.872 47 H 0.252 0.748 48 H 0.116 0.884 49 H 0.111 0.889 50 H 0.101 0.899 51 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -0.894 8.621 0.978 8.722 hybrid contribution 0.236 0.153 -0.006 0.281 sum -0.658 8.773 0.972 8.851 Atomic orbital electron populations 1.23548 0.75242 1.06162 1.03316 1.86144 1.24647 1.26318 1.87213 1.19361 0.90611 0.86623 0.93279 1.17437 0.86864 0.82281 1.18181 1.85705 1.72206 1.46837 1.57189 1.06088 0.76898 0.76260 0.73451 1.93575 1.81924 1.38116 1.83257 1.93592 1.44334 1.86599 1.72208 1.30868 1.18477 1.17141 1.10037 1.21205 1.01482 1.01672 0.91224 1.26319 1.01616 1.03387 1.18692 0.78324 0.65543 0.65405 0.64769 1.26401 1.15400 1.04622 1.11342 1.26215 1.13095 1.11040 1.06256 1.26421 1.06772 1.20196 1.04517 1.21295 1.01635 0.89795 0.99246 1.19165 0.93426 0.93391 1.04700 1.24468 1.09984 0.93052 0.90153 1.86484 1.82031 1.39489 1.28251 0.85958 0.76026 0.82104 0.80323 1.18486 1.17511 1.16469 1.20154 0.93056 0.95995 0.90199 1.21105 0.99592 0.93098 1.04442 1.21473 1.01999 0.89959 1.08291 0.86669 0.90785 0.89934 0.82978 0.82017 0.89551 0.89465 0.88999 0.88978 0.90928 0.91287 0.91597 0.91055 0.91380 0.90933 0.91590 0.91289 0.91013 0.82611 0.87217 0.74812 0.88352 0.88902 0.89887 0.81057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.00 9.81 113.37 1.11 1.11 16 2 O -0.33 -3.48 9.73 -72.63 -0.71 -4.18 16 3 C 0.15 1.31 5.93 22.57 0.13 1.44 16 4 C -0.01 -0.05 4.81 22.57 0.11 0.06 16 5 O -0.66 -7.97 9.84 -60.59 -0.60 -8.57 16 6 S 2.57 29.32 5.17 -56.49 -0.29 29.03 16 7 O -0.97 -17.63 18.09 -118.57 -2.15 -19.77 16 8 O -0.97 -14.96 15.82 -117.14 -1.85 -16.82 16 9 C -0.63 -0.96 5.45 71.98 0.39 -0.57 16 10 C -0.12 -0.05 4.59 30.59 0.14 0.09 16 11 C -0.42 1.54 4.45 71.98 0.32 1.86 16 12 Si 1.07 -5.05 12.19 68.60 0.84 -4.21 16 13 C -0.47 0.73 8.65 113.37 0.98 1.71 16 14 C -0.46 1.61 8.65 113.37 0.98 2.59 16 15 C -0.47 0.62 8.65 113.37 0.98 1.60 16 16 C -0.10 -0.36 7.06 22.35 0.16 -0.20 16 17 C -0.11 -0.01 5.29 -19.86 -0.11 -0.12 16 18 C -0.07 0.39 1.87 71.23 0.13 0.52 16 19 O -0.55 3.55 11.90 -148.98 -1.77 1.78 16 20 Si 0.93 -4.26 25.49 68.60 1.75 -2.51 16 21 H -0.26 0.40 7.11 99.48 0.71 1.10 16 22 H -0.25 0.87 6.73 99.48 0.67 1.54 16 23 H -0.24 1.31 7.11 99.48 0.71 2.02 16 24 C 0.01 -0.01 5.88 -19.86 -0.12 -0.12 16 25 C -0.13 0.91 9.32 71.24 0.66 1.57 16 26 C -0.20 -0.30 8.69 22.35 0.19 -0.11 16 27 H 0.12 -0.27 8.14 -2.39 -0.02 -0.29 16 28 H 0.07 -0.18 7.66 -2.39 -0.02 -0.20 16 29 H 0.08 -0.40 7.66 -2.38 -0.02 -0.42 16 30 H 0.15 -0.27 6.58 -2.39 -0.02 -0.29 16 31 H 0.16 -0.56 8.14 -2.39 -0.02 -0.58 16 32 H 0.09 -0.05 7.79 -2.39 -0.02 -0.07 16 33 H 0.09 -0.06 7.79 -2.39 -0.02 -0.07 16 34 H 0.09 -0.49 7.96 -2.38 -0.02 -0.51 16 35 H 0.09 -0.51 7.96 -2.39 -0.02 -0.53 16 36 H 0.07 -0.15 7.96 -2.39 -0.02 -0.16 16 37 H 0.07 -0.09 7.96 -2.39 -0.02 -0.11 16 38 H 0.06 -0.03 7.79 -2.39 -0.02 -0.05 16 39 H 0.07 -0.26 7.96 -2.39 -0.02 -0.28 16 40 H 0.07 -0.19 7.96 -2.39 -0.02 -0.21 16 41 H 0.07 -0.28 7.96 -2.39 -0.02 -0.30 16 42 H 0.06 -0.02 7.79 -2.39 -0.02 -0.04 16 43 H 0.07 -0.08 7.96 -2.39 -0.02 -0.10 16 44 H 0.07 -0.12 7.96 -2.39 -0.02 -0.14 16 45 H 0.16 -0.10 4.28 -2.91 -0.01 -0.11 16 46 H 0.11 -1.23 7.38 -2.39 -0.02 -1.25 16 47 H 0.40 -6.09 8.74 -74.06 -0.65 -6.74 16 48 H 0.10 -1.01 8.14 -2.39 -0.02 -1.03 16 49 H 0.09 -0.71 6.19 -2.39 -0.01 -0.72 16 50 H 0.08 -0.69 8.08 -2.39 -0.02 -0.71 16 51 H 0.17 -0.78 6.30 -2.91 -0.02 -0.80 16 Total: 0.00 -27.16 418.42 2.29 -24.87 By element: Atomic # 1 Polarization: -12.04 SS G_CDS: 1.00 Total: -11.04 kcal Atomic # 6 Polarization: 5.35 SS G_CDS: 6.08 Total: 11.43 kcal Atomic # 8 Polarization: -40.49 SS G_CDS: -7.07 Total: -47.56 kcal Atomic # 14 Polarization: -9.31 SS G_CDS: 2.58 Total: -6.72 kcal Atomic # 16 Polarization: 29.32 SS G_CDS: -0.29 Total: 29.03 kcal Total: -27.16 2.29 -24.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_14060150_14927650.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -170.972 kcal (2) G-P(sol) polarization free energy of solvation -27.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds