Wall clock time and date at job start Sat Mar 6 2021 00:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45195 * 109.47124 * 2 1 4 4 C 1.34232 * 116.99927 * 180.02562 * 3 2 1 5 5 O 1.20820 * 119.99791 * 359.97438 * 4 3 2 6 6 C 1.50701 * 119.99882 * 179.97438 * 4 3 2 7 7 H 1.09002 * 112.85178 * 309.66385 * 6 4 3 8 8 C 1.53785 * 113.69000 * 80.93543 * 6 4 3 9 9 C 1.53777 * 87.08241 * 89.12299 * 8 6 4 10 10 F 1.39895 * 113.61770 * 270.88672 * 9 8 6 11 11 C 1.52998 * 113.68937 * 139.98701 * 9 8 6 12 12 S 1.81398 * 109.46738 * 82.46796 * 11 9 8 13 13 O 1.42101 * 110.54518 * 291.62117 * 12 11 9 14 14 O 1.42100 * 110.54420 * 68.37349 * 12 11 9 15 15 O 1.52200 * 104.45332 * 179.97438 * 12 11 9 16 16 C 1.35999 * 113.99985 * 74.99757 * 15 12 11 17 17 C 1.39153 * 120.07278 * 90.00459 * 16 15 12 18 18 O 1.35994 * 120.07037 * 0.02562 * 17 16 15 19 19 C 1.42899 * 116.99646 * 180.02562 * 18 17 16 20 20 C 1.38563 * 119.85157 * 180.02562 * 17 16 15 21 21 C 1.38237 * 120.00236 * 359.97438 * 20 17 16 22 22 C 1.50709 * 119.92508 * 179.97438 * 21 20 17 23 23 C 1.38252 * 120.14745 * 0.02565 * 21 20 17 24 24 C 1.50697 * 119.92937 * 179.97438 * 23 21 20 25 25 O 1.42904 * 109.46887 * 74.99788 * 24 23 21 26 26 Si 1.86297 * 109.47514 * 194.99978 * 24 23 21 27 27 C 1.38244 * 120.14301 * 359.68056 * 23 21 20 28 28 C 1.53781 * 113.61206 * 178.47078 * 6 4 3 29 29 H 1.08998 * 109.47094 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46887 * 300.00022 * 1 2 3 31 31 H 1.08993 * 109.46867 * 59.99942 * 1 2 3 32 32 H 1.09001 * 109.46715 * 239.99284 * 2 1 3 33 33 H 1.09003 * 109.46911 * 120.00138 * 2 1 3 34 34 H 1.08999 * 113.61060 * 203.67722 * 8 6 4 35 35 H 1.08997 * 113.61198 * 334.57515 * 8 6 4 36 36 H 1.08995 * 109.47568 * 202.46290 * 11 9 8 37 37 H 1.08996 * 109.47622 * 322.47327 * 11 9 8 38 38 H 1.09001 * 109.47437 * 180.02562 * 19 18 17 39 39 H 1.08999 * 109.47307 * 300.00020 * 19 18 17 40 40 H 1.08996 * 109.47738 * 60.00536 * 19 18 17 41 41 H 1.08000 * 119.99732 * 179.97438 * 20 17 16 42 42 H 1.08993 * 109.46569 * 90.00560 * 22 21 20 43 43 H 1.09004 * 109.46765 * 209.99950 * 22 21 20 44 44 H 1.08998 * 109.47149 * 330.00563 * 22 21 20 45 45 H 1.09007 * 109.46911 * 315.00269 * 24 23 21 46 46 H 0.96698 * 113.99852 * 60.00488 * 25 24 23 47 47 H 1.48505 * 109.99736 * 58.68169 * 26 24 23 48 48 H 1.48498 * 110.00317 * 179.97438 * 26 24 23 49 49 H 1.08000 * 119.99771 * 180.32315 * 27 23 21 50 50 H 1.09000 * 113.61578 * 25.34539 * 28 6 4 51 51 H 1.09001 * 113.61682 * 156.17118 * 28 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9208 2.9374 -0.0012 7 1 3.4899 3.5733 -0.7744 8 6 3.9524 3.5935 1.3893 9 6 5.3426 2.9613 1.5695 10 9 5.3068 1.6770 2.1229 11 6 6.3503 3.8796 2.2638 12 16 6.1162 3.7854 4.0602 13 8 4.8762 4.3709 4.4329 14 8 6.4977 2.5058 4.5463 15 8 7.1644 4.7305 4.6299 16 6 6.8591 6.0478 4.4841 17 6 6.1370 6.7097 5.4725 18 8 5.7355 6.0409 6.5864 19 6 4.9976 6.7842 7.5586 20 6 5.8280 8.0517 5.3190 21 6 6.2374 8.7301 4.1862 22 6 5.8999 10.1896 4.0208 23 6 6.9548 8.0725 3.2043 24 6 7.3982 8.8167 1.9712 25 8 8.4997 9.6664 2.2979 26 14 7.9213 7.5968 0.6640 27 6 7.2717 6.7352 3.3540 28 6 5.4579 2.9682 0.0359 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8901 31 1 -0.3633 0.5138 -0.8899 32 1 1.8933 -0.5140 -0.8899 33 1 1.8934 -0.5139 0.8900 34 1 3.9689 4.6829 1.3577 35 1 3.2018 3.2003 2.0748 36 1 7.3628 3.5641 2.0124 37 1 6.1962 4.9060 1.9308 38 1 4.7402 6.1339 8.3946 39 1 5.6048 7.6148 7.9185 40 1 4.0854 7.1711 7.1046 41 1 5.2673 8.5677 6.0844 42 1 6.6956 10.7975 4.4512 43 1 5.7988 10.4212 2.9605 44 1 4.9612 10.4055 4.5311 45 1 6.5725 9.4208 1.5949 46 1 9.2719 9.1953 2.6399 47 1 6.7938 6.6868 0.3383 48 1 8.3602 8.3182 -0.5576 49 1 7.8367 6.2251 2.5879 50 1 5.9225 2.0701 -0.3711 51 1 5.8860 3.8861 -0.3670 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_40_14060150_15494190.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 00:10:43 Heat of formation + Delta-G solvation = -237.978150 kcal Electronic energy + Delta-G solvation = -41387.083461 eV Core-core repulsion = 35876.983367 eV Total energy + Delta-G solvation = -5510.100095 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 419.132 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -49.21428 -42.59018 -41.89106 -40.38019 -39.50517 -39.33830 -38.47355 -37.56875 -37.35909 -37.08841 -33.48134 -32.85840 -32.26468 -31.88480 -28.93388 -28.10926 -27.27095 -26.78669 -26.07140 -24.18171 -23.73377 -23.05724 -22.66126 -21.46263 -20.74802 -19.77690 -19.15324 -19.12214 -18.73407 -18.46824 -18.01182 -17.84572 -17.49873 -17.32389 -17.14063 -16.90227 -16.75123 -16.42370 -16.24286 -16.01766 -15.75755 -15.65988 -15.31443 -15.24801 -14.78456 -14.59897 -14.52304 -14.29846 -14.21412 -14.16168 -14.02978 -13.80198 -13.62369 -13.51772 -13.43642 -13.39123 -13.26103 -13.16764 -13.04158 -13.00893 -12.87217 -12.80895 -12.57474 -12.43539 -12.30096 -12.17708 -11.91605 -11.85594 -11.71495 -11.63160 -11.57994 -11.41374 -10.37930 -10.10083 -9.41666 -4.95643 -1.26840 -0.16835 -0.00782 0.89250 0.98047 1.33069 1.50471 1.64189 2.03309 2.04603 2.18673 2.36627 2.65470 2.73249 2.79518 2.91687 3.16581 3.32323 3.39213 3.45915 3.50859 3.61510 3.64282 3.81297 3.86674 3.90821 3.98150 3.98798 4.13306 4.18505 4.22079 4.25411 4.31085 4.33208 4.46171 4.50719 4.51715 4.58487 4.58879 4.61784 4.63898 4.72353 4.74304 4.78478 4.81878 4.83931 4.92764 4.97749 5.07745 5.15170 5.34934 5.36797 5.46446 6.10426 6.57768 6.81828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.053 3.947 3 O -0.359 6.359 4 C 0.464 3.536 5 O -0.526 6.526 6 C -0.113 4.113 7 H 0.168 0.832 8 C -0.145 4.145 9 C 0.068 3.932 10 F -0.199 7.199 11 C -0.659 4.659 12 S 2.576 3.424 13 O -0.958 6.958 14 O -0.969 6.969 15 O -0.651 6.651 16 C -0.007 4.007 17 C 0.152 3.848 18 O -0.331 6.331 19 C 0.011 3.989 20 C -0.199 4.199 21 C 0.007 3.993 22 C -0.122 4.122 23 C -0.140 4.140 24 C -0.065 4.065 25 O -0.550 6.550 26 Si 0.723 3.277 27 C -0.077 4.077 28 C -0.113 4.113 29 H 0.096 0.904 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.060 0.940 34 H 0.164 0.836 35 H 0.083 0.917 36 H 0.192 0.808 37 H 0.193 0.807 38 H 0.113 0.887 39 H 0.080 0.920 40 H 0.075 0.925 41 H 0.166 0.834 42 H 0.089 0.911 43 H 0.082 0.918 44 H 0.082 0.918 45 H 0.124 0.876 46 H 0.395 0.605 47 H -0.238 1.238 48 H -0.296 1.296 49 H 0.180 0.820 50 H 0.091 0.909 51 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.725 10.158 -3.963 10.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.021 4.021 3 O -0.276 6.276 4 C 0.308 3.692 5 O -0.415 6.415 6 C -0.131 4.131 7 H 0.185 0.815 8 C -0.182 4.182 9 C 0.049 3.951 10 F -0.180 7.180 11 C -0.787 4.787 12 S 2.675 3.325 13 O -0.956 6.956 14 O -0.967 6.967 15 O -0.611 6.611 16 C -0.050 4.050 17 C 0.103 3.897 18 O -0.244 6.244 19 C -0.082 4.082 20 C -0.218 4.218 21 C 0.006 3.994 22 C -0.178 4.178 23 C -0.141 4.141 24 C -0.175 4.175 25 O -0.358 6.358 26 Si 0.626 3.374 27 C -0.096 4.096 28 C -0.150 4.150 29 H 0.115 0.885 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.079 0.921 34 H 0.182 0.818 35 H 0.102 0.898 36 H 0.209 0.791 37 H 0.211 0.789 38 H 0.131 0.869 39 H 0.099 0.901 40 H 0.093 0.907 41 H 0.183 0.817 42 H 0.107 0.893 43 H 0.101 0.899 44 H 0.101 0.899 45 H 0.141 0.859 46 H 0.245 0.755 47 H -0.162 1.162 48 H -0.223 1.223 49 H 0.197 0.803 50 H 0.109 0.891 51 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -1.161 9.414 -4.104 10.335 hybrid contribution -0.266 -0.575 0.412 0.756 sum -1.427 8.839 -3.691 9.684 Atomic orbital electron populations 1.21826 0.90382 1.04351 1.03845 1.23274 0.97130 0.79287 1.02384 1.86485 1.23987 1.33511 1.83577 1.23752 0.80844 0.92904 0.71720 1.90696 1.61050 1.44084 1.45672 1.22166 0.98217 0.90280 1.02483 0.81499 1.23987 0.94109 1.04925 0.95196 1.21976 0.97335 0.78456 0.97351 1.92983 1.97313 1.40927 1.86770 1.31311 1.11888 1.11353 1.24185 1.05938 0.73843 0.73920 0.78771 1.93603 1.45461 1.75765 1.80821 1.93604 1.82470 1.41565 1.79071 1.85784 1.66595 1.25163 1.83511 1.17576 1.09655 0.79046 0.98719 1.19425 0.91879 0.91793 0.86639 1.86157 1.69206 1.40596 1.28421 1.23525 0.95871 0.98445 0.90396 1.21403 1.06880 0.91643 1.01845 1.20073 0.91166 0.97270 0.90921 1.21016 1.03105 0.89477 1.04230 1.20084 1.02256 0.92702 0.99060 1.25136 0.92602 1.00634 0.99149 1.86504 1.25515 1.36637 1.87095 0.94511 0.86173 0.80315 0.76379 1.21226 0.98190 0.94757 0.95413 1.23710 0.93300 1.07844 0.90196 0.88499 0.91429 0.90776 0.91000 0.92110 0.81800 0.89835 0.79087 0.78939 0.86892 0.90107 0.90684 0.81707 0.89291 0.89945 0.89913 0.85871 0.75510 1.16211 1.22289 0.80316 0.89076 0.81597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.21 10.29 71.98 0.74 0.95 16 2 C 0.05 0.21 6.19 71.98 0.45 0.66 16 3 O -0.36 -2.19 10.22 -51.44 -0.53 -2.72 16 4 C 0.46 3.24 6.90 71.24 0.49 3.73 16 5 O -0.53 -7.34 14.56 21.98 0.32 -7.02 16 6 C -0.11 0.28 4.45 -11.01 -0.05 0.23 16 7 H 0.17 -1.68 8.14 -2.39 -0.02 -1.70 16 8 C -0.14 0.31 7.11 31.12 0.22 0.53 16 9 C 0.07 0.11 1.61 -10.27 -0.02 0.10 16 10 F -0.20 -2.58 14.66 44.97 0.66 -1.92 16 11 C -0.66 2.21 5.19 71.98 0.37 2.58 16 12 S 2.58 22.94 4.89 -56.49 -0.28 22.67 16 13 O -0.96 -11.19 15.82 -117.15 -1.85 -13.04 16 14 O -0.97 -18.51 17.53 -118.57 -2.08 -20.59 16 15 O -0.65 -4.62 9.84 -60.56 -0.60 -5.22 16 16 C -0.01 -0.02 4.80 22.57 0.11 0.09 16 17 C 0.15 0.64 5.93 22.57 0.13 0.77 16 18 O -0.33 -2.51 9.73 -72.67 -0.71 -3.21 16 19 C 0.01 -0.02 9.81 113.37 1.11 1.09 16 20 C -0.20 0.43 8.69 22.35 0.19 0.63 16 21 C 0.01 -0.03 5.88 -19.86 -0.12 -0.15 16 22 C -0.12 0.98 9.54 71.24 0.68 1.66 16 23 C -0.14 0.90 5.26 -19.86 -0.10 0.79 16 24 C -0.07 0.56 2.04 71.24 0.15 0.71 16 25 O -0.55 3.91 12.80 -148.98 -1.91 2.00 16 26 Si 0.72 -7.60 29.91 68.60 2.05 -5.54 16 27 C -0.08 0.42 7.07 22.35 0.16 0.58 16 28 C -0.11 0.49 6.93 31.12 0.22 0.71 16 29 H 0.10 -0.42 8.14 -2.39 -0.02 -0.44 16 30 H 0.07 -0.07 8.14 -2.38 -0.02 -0.09 16 31 H 0.07 -0.18 8.14 -2.39 -0.02 -0.20 16 32 H 0.07 0.26 8.13 -2.39 -0.02 0.24 16 33 H 0.06 0.37 8.13 -2.39 -0.02 0.35 16 34 H 0.16 -1.71 7.97 -2.39 -0.02 -1.73 16 35 H 0.08 0.16 8.10 -2.39 -0.02 0.14 16 36 H 0.19 -1.91 8.14 -2.39 -0.02 -1.93 16 37 H 0.19 -2.37 6.44 -2.39 -0.02 -2.38 16 38 H 0.11 -0.41 8.14 -2.39 -0.02 -0.43 16 39 H 0.08 -0.51 7.66 -2.39 -0.02 -0.53 16 40 H 0.07 -0.34 7.66 -2.39 -0.02 -0.36 16 41 H 0.17 -1.12 6.30 -2.91 -0.02 -1.14 16 42 H 0.09 -0.69 8.14 -2.39 -0.02 -0.71 16 43 H 0.08 -0.72 6.22 -2.39 -0.01 -0.73 16 44 H 0.08 -0.81 8.08 -2.39 -0.02 -0.83 16 45 H 0.12 -1.14 6.48 -2.38 -0.02 -1.15 16 46 H 0.39 -5.52 8.70 -74.06 -0.64 -6.17 16 47 H -0.24 2.80 7.11 99.48 0.71 3.51 16 48 H -0.30 0.50 7.11 99.48 0.71 1.20 16 49 H 0.18 -2.39 4.60 -2.91 -0.01 -2.40 16 50 H 0.09 -0.01 7.42 -2.39 -0.02 -0.03 16 51 H 0.17 -2.32 8.10 -2.39 -0.02 -2.34 16 Total: 0.00 -39.00 428.86 0.21 -38.80 By element: Atomic # 1 Polarization: -20.23 SS G_CDS: 0.39 Total: -19.85 kcal Atomic # 6 Polarization: 10.91 SS G_CDS: 4.73 Total: 15.64 kcal Atomic # 8 Polarization: -42.44 SS G_CDS: -7.35 Total: -49.79 kcal Atomic # 9 Polarization: -2.58 SS G_CDS: 0.66 Total: -1.92 kcal Atomic # 14 Polarization: -7.60 SS G_CDS: 2.05 Total: -5.54 kcal Atomic # 16 Polarization: 22.94 SS G_CDS: -0.28 Total: 22.67 kcal Total: -39.00 0.21 -38.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_14060150_15494190.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -199.181 kcal (2) G-P(sol) polarization free energy of solvation -39.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -238.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -237.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds