Wall clock time and date at job start Sat Mar 6 2021 01:18:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35998 * 116.99760 * 2 1 4 4 C 1.38526 * 120.07370 * 0.29534 * 3 2 1 5 5 C 1.38285 * 119.99953 * 180.27241 * 4 3 2 6 6 C 1.50695 * 119.92784 * 179.70521 * 5 4 3 7 7 C 1.38213 * 120.14404 * 359.72670 * 5 4 3 8 8 C 1.50698 * 119.92368 * 180.02562 * 7 5 4 9 9 O 1.42905 * 109.46941 * 284.97546 * 8 7 5 10 10 Si 1.86301 * 109.47341 * 164.97835 * 8 7 5 11 11 C 1.38281 * 120.14747 * 359.97438 * 7 5 4 12 12 C 1.38522 * 120.00000 * 0.02562 * 11 7 5 13 13 O 1.35990 * 120.07172 * 179.97438 * 12 11 7 14 14 S 1.52209 * 113.99761 * 90.00596 * 13 12 11 15 15 O 1.42097 * 104.27630 * 318.92705 * 14 13 12 16 16 O 1.42100 * 104.27632 * 191.06833 * 14 13 12 17 17 C 1.81397 * 104.44912 * 74.99825 * 14 13 12 18 18 C 1.52997 * 109.47087 * 179.97438 * 17 14 13 19 19 H 1.08998 * 112.90941 * 43.75015 * 18 17 14 20 20 C 1.53781 * 113.61493 * 174.99784 * 18 17 14 21 21 C 1.53782 * 87.07841 * 89.11993 * 20 18 17 22 22 O 1.42910 * 113.61342 * 270.88247 * 21 20 18 23 23 C 1.42901 * 113.99934 * 294.69800 * 22 21 20 24 24 C 1.53001 * 113.61731 * 140.06861 * 21 20 18 25 25 F 1.39908 * 109.47053 * 54.76863 * 24 21 20 26 26 F 1.39896 * 109.47786 * 174.77047 * 24 21 20 27 27 F 1.39901 * 109.46876 * 294.77206 * 24 21 20 28 28 C 1.53774 * 113.61626 * 272.49819 * 18 17 14 29 29 H 1.09000 * 109.46856 * 60.00452 * 1 2 3 30 30 H 1.09000 * 109.46687 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47680 * 300.00080 * 1 2 3 32 32 H 1.08000 * 120.00307 * 0.02562 * 4 3 2 33 33 H 1.09000 * 109.47022 * 270.01968 * 6 5 4 34 34 H 1.09002 * 109.47379 * 30.02062 * 6 5 4 35 35 H 1.09000 * 109.47657 * 150.02372 * 6 5 4 36 36 H 1.08998 * 109.47436 * 44.97457 * 8 7 5 37 37 H 0.96700 * 114.00122 * 300.00103 * 9 8 7 38 38 H 1.48505 * 109.99774 * 58.67626 * 10 8 7 39 39 H 1.48489 * 110.00386 * 179.97438 * 10 8 7 40 40 H 1.07997 * 119.99975 * 180.02562 * 11 7 5 41 41 H 1.09001 * 109.47331 * 59.99889 * 17 14 13 42 42 H 1.09000 * 109.47082 * 299.99967 * 17 14 13 43 43 H 1.09003 * 113.61411 * 334.57293 * 20 18 17 44 44 H 1.09002 * 113.61791 * 203.66537 * 20 18 17 45 45 H 1.08998 * 109.47350 * 56.99249 * 23 22 21 46 46 H 1.09000 * 109.46492 * 176.99255 * 23 22 21 47 47 H 1.08996 * 109.47054 * 296.99158 * 23 22 21 48 48 H 1.09001 * 113.61705 * 156.33755 * 28 18 17 49 49 H 1.09001 * 113.69115 * 25.44221 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2934 2.3745 0.0062 5 6 1.9227 3.6058 0.0005 6 6 1.1019 4.8696 0.0005 7 6 3.3028 3.6799 -0.0057 8 6 3.9834 5.0244 -0.0113 9 8 3.8823 5.6041 -1.3136 10 14 5.7794 4.8132 0.4365 11 6 4.0604 2.5231 -0.0056 12 6 3.4363 1.2865 0.0001 13 8 4.1799 0.1479 -0.0004 14 16 4.5243 -0.3671 1.3899 15 8 4.8443 0.8041 2.1281 16 8 5.4978 -1.3761 1.1586 17 6 2.9798 -1.0998 1.9966 18 6 3.1993 -1.6603 3.4032 19 1 3.7687 -0.9871 4.0441 20 6 1.9164 -2.1973 4.0595 21 6 2.2456 -3.5521 3.4106 22 8 1.6987 -3.7068 2.0994 23 6 0.2703 -3.7342 2.0649 24 6 1.9620 -4.7511 4.3177 25 9 0.6332 -4.7030 4.7527 26 9 2.1769 -5.9359 3.6056 27 9 2.8167 -4.7108 5.4246 28 6 3.7178 -3.1079 3.4156 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 0.2148 2.3194 0.0114 33 1 0.8996 5.1715 -1.0272 34 1 0.1598 4.6911 0.5189 35 1 1.6525 5.6606 0.5097 36 1 3.5021 5.6784 0.7158 37 1 4.2903 5.0748 -2.0125 38 1 6.4394 3.8982 -0.5291 39 1 6.4621 6.1319 0.4339 40 1 5.1387 2.5838 -0.0100 41 1 2.6727 -1.9049 1.3290 42 1 2.2026 -0.3362 2.0265 43 1 1.0049 -1.7392 3.6755 44 1 1.9569 -2.2135 5.1486 45 1 -0.1216 -2.8233 2.5173 46 1 -0.0668 -3.8004 1.0305 47 1 -0.0899 -4.5999 2.6206 48 1 4.2507 -3.3731 4.3287 49 1 4.2609 -3.3864 2.5124 There are 76 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 76 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_40_14060150_17541816.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 01:18:43 Heat of formation + Delta-G solvation = -292.960587 kcal Electronic energy + Delta-G solvation = -43507.004160 eV Core-core repulsion = 37502.520230 eV Total energy + Delta-G solvation = -6004.483931 eV No. of doubly occupied orbitals = 76 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 427.113 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -51.24925 -48.78075 -48.72181 -42.58337 -41.44085 -40.34593 -39.54242 -38.37910 -37.35687 -37.26389 -37.21814 -33.39145 -32.20979 -31.73225 -28.90704 -28.33390 -28.06287 -27.80373 -26.78199 -26.13689 -23.90721 -23.71542 -22.87013 -21.53483 -20.68540 -20.00597 -19.61931 -19.54587 -19.28718 -18.97183 -18.72316 -18.44092 -17.93225 -17.25827 -17.17927 -16.81714 -16.50177 -16.45705 -16.25042 -16.03989 -15.79333 -15.72122 -15.64849 -15.58402 -15.30990 -15.26530 -15.13004 -14.89780 -14.86423 -14.62947 -14.54931 -14.36997 -14.28563 -14.08285 -13.98049 -13.61634 -13.43261 -13.30867 -13.24128 -13.14868 -13.09569 -12.98760 -12.90074 -12.82473 -12.35098 -12.29867 -12.19122 -12.15436 -12.04248 -11.89575 -11.78010 -11.38728 -10.79153 -10.64767 -10.05166 -9.44287 -4.95015 -1.07292 -0.09696 -0.03573 0.97472 1.23295 1.49054 1.53141 1.83583 1.95941 2.10717 2.20352 2.46590 2.55999 2.62558 2.85540 2.87893 3.16767 3.31613 3.34090 3.36561 3.43395 3.52032 3.54742 3.56392 3.85030 3.92202 4.04153 4.22568 4.28600 4.31553 4.32707 4.36664 4.42556 4.47338 4.53339 4.54239 4.58680 4.64514 4.67164 4.68651 4.71296 4.76841 4.81972 4.86026 4.86842 4.93045 4.99124 5.18847 5.39207 5.48655 5.75018 6.07608 6.44809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.004 3.996 2 O -0.319 6.319 3 C 0.137 3.863 4 C -0.188 4.188 5 C 0.008 3.992 6 C -0.122 4.122 7 C -0.143 4.143 8 C -0.054 4.054 9 O -0.535 6.535 10 Si 0.714 3.286 11 C -0.070 4.070 12 C -0.001 4.001 13 O -0.663 6.663 14 S 2.578 3.422 15 O -0.965 6.965 16 O -0.968 6.968 17 C -0.605 4.605 18 C -0.097 4.097 19 H 0.125 0.875 20 C -0.123 4.123 21 C 0.039 3.961 22 O -0.345 6.345 23 C 0.002 3.998 24 C 0.432 3.568 25 F -0.181 7.181 26 F -0.189 7.189 27 F -0.177 7.177 28 C -0.141 4.141 29 H 0.072 0.928 30 H 0.123 0.877 31 H 0.086 0.914 32 H 0.181 0.819 33 H 0.085 0.915 34 H 0.092 0.908 35 H 0.082 0.918 36 H 0.146 0.854 37 H 0.386 0.614 38 H -0.291 1.291 39 H -0.283 1.283 40 H 0.138 0.862 41 H 0.160 0.840 42 H 0.165 0.835 43 H 0.118 0.882 44 H 0.126 0.874 45 H 0.078 0.922 46 H 0.115 0.885 47 H 0.041 0.959 48 H 0.134 0.866 49 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.612 4.533 2.083 11.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 O -0.232 6.232 3 C 0.089 3.911 4 C -0.206 4.206 5 C 0.007 3.993 6 C -0.178 4.178 7 C -0.144 4.144 8 C -0.165 4.165 9 O -0.343 6.343 10 Si 0.621 3.379 11 C -0.090 4.090 12 C -0.044 4.044 13 O -0.622 6.622 14 S 2.678 3.322 15 O -0.964 6.964 16 O -0.967 6.967 17 C -0.735 4.735 18 C -0.116 4.116 19 H 0.143 0.857 20 C -0.161 4.161 21 C -0.003 4.003 22 O -0.263 6.263 23 C -0.093 4.093 24 C 0.378 3.622 25 F -0.163 7.163 26 F -0.170 7.170 27 F -0.158 7.158 28 C -0.177 4.177 29 H 0.090 0.910 30 H 0.141 0.859 31 H 0.104 0.896 32 H 0.198 0.802 33 H 0.103 0.897 34 H 0.111 0.889 35 H 0.100 0.900 36 H 0.164 0.836 37 H 0.235 0.765 38 H -0.219 1.219 39 H -0.210 1.210 40 H 0.155 0.845 41 H 0.178 0.822 42 H 0.183 0.817 43 H 0.136 0.864 44 H 0.145 0.855 45 H 0.096 0.904 46 H 0.133 0.867 47 H 0.060 0.940 48 H 0.152 0.848 49 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -9.126 4.931 1.787 10.526 hybrid contribution -0.427 -1.304 -1.032 1.717 sum -9.553 3.627 0.755 10.246 Atomic orbital electron populations 1.23651 0.74953 1.06612 1.03705 1.86212 1.24707 1.24815 1.87470 1.19112 0.89336 0.87168 0.95516 1.21447 1.02118 0.89460 1.07589 1.20067 0.92429 0.96334 0.90455 1.21030 0.99778 0.93068 1.03970 1.19941 0.94229 0.94261 1.05942 1.24747 1.09755 0.93203 0.88805 1.86583 1.80587 1.50554 1.16580 0.94174 0.74849 0.78100 0.90733 1.21203 1.01092 0.90626 0.96079 1.17419 0.86678 0.82340 1.17928 1.85724 1.73015 1.46252 1.57203 1.05918 0.78063 0.74818 0.73392 1.93607 1.83804 1.46535 1.72438 1.93591 1.58532 1.61405 1.83141 1.30565 1.21142 1.15033 1.06729 1.21854 1.00015 0.96459 0.93312 0.85731 1.23626 0.99319 0.90572 1.02566 1.24051 1.00144 0.90832 0.85293 1.88073 1.22912 1.93168 1.22142 1.23342 0.78597 1.02122 1.05286 1.21509 0.74232 0.85842 0.80629 1.93185 1.35816 1.96603 1.90681 1.93188 1.94501 1.51103 1.78255 1.93173 1.70591 1.96529 1.55509 1.23632 0.92084 0.95219 1.06813 0.90972 0.85877 0.89581 0.80193 0.89696 0.88884 0.89967 0.83614 0.76513 1.21858 1.21012 0.84486 0.82185 0.81683 0.86402 0.85549 0.90358 0.86685 0.93984 0.84790 0.88886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.06 9.81 113.37 1.11 1.06 16 2 O -0.32 1.62 7.54 -79.69 -0.60 1.02 16 3 C 0.14 -0.27 5.83 22.57 0.13 -0.14 16 4 C -0.19 1.24 8.69 22.35 0.19 1.44 16 5 C 0.01 -0.04 5.88 -19.86 -0.12 -0.16 16 6 C -0.12 1.08 9.53 71.23 0.68 1.76 16 7 C -0.14 0.15 5.26 -19.86 -0.10 0.05 16 8 C -0.05 0.12 2.04 71.24 0.15 0.27 16 9 O -0.54 0.42 12.80 -148.98 -1.91 -1.49 16 10 Si 0.71 0.95 30.24 68.60 2.07 3.02 16 11 C -0.07 -0.26 7.65 22.35 0.17 -0.09 16 12 C 0.00 -0.01 4.80 22.57 0.11 0.10 16 13 O -0.66 -5.24 9.84 -60.46 -0.60 -5.84 16 14 S 2.58 16.77 5.16 -56.49 -0.29 16.48 16 15 O -0.97 -8.00 16.26 -118.57 -1.93 -9.92 16 16 O -0.97 -13.65 18.09 -118.57 -2.15 -15.80 16 17 C -0.60 1.56 4.11 71.98 0.30 1.86 16 18 C -0.10 0.42 3.84 -10.27 -0.04 0.38 16 19 H 0.12 -0.89 8.13 -2.39 -0.02 -0.91 16 20 C -0.12 0.91 6.51 31.12 0.20 1.11 16 21 C 0.04 -0.06 0.85 -10.27 -0.01 -0.07 16 22 O -0.34 0.30 8.35 -148.98 -1.24 -0.94 16 23 C 0.00 -0.01 10.34 113.37 1.17 1.16 16 24 C 0.43 0.81 2.51 71.98 0.18 0.99 16 25 F -0.18 -0.22 15.37 44.97 0.69 0.47 16 26 F -0.19 -1.23 17.09 44.97 0.77 -0.46 16 27 F -0.18 -0.38 15.83 44.97 0.71 0.33 16 28 C -0.14 0.13 6.89 31.12 0.21 0.34 16 29 H 0.07 -1.04 7.68 -2.39 -0.02 -1.06 16 30 H 0.12 -2.01 8.14 -2.39 -0.02 -2.03 16 31 H 0.09 -1.51 7.65 -2.39 -0.02 -1.53 16 32 H 0.18 -2.47 6.30 -2.91 -0.02 -2.49 16 33 H 0.08 -0.69 8.14 -2.39 -0.02 -0.70 16 34 H 0.09 -1.18 8.08 -2.39 -0.02 -1.20 16 35 H 0.08 -0.72 6.22 -2.39 -0.01 -0.73 16 36 H 0.15 -0.93 6.48 -2.39 -0.02 -0.94 16 37 H 0.39 -1.89 8.70 -74.06 -0.64 -2.53 16 38 H -0.29 -1.95 6.68 99.48 0.66 -1.28 16 39 H -0.28 -1.93 7.11 99.48 0.71 -1.23 16 40 H 0.14 0.69 4.85 -2.91 -0.01 0.67 16 41 H 0.16 -0.39 6.08 -2.39 -0.01 -0.40 16 42 H 0.17 -1.29 6.04 -2.39 -0.01 -1.30 16 43 H 0.12 -1.37 6.64 -2.39 -0.02 -1.39 16 44 H 0.13 -1.24 8.06 -2.39 -0.02 -1.26 16 45 H 0.08 -0.89 6.60 -2.39 -0.02 -0.91 16 46 H 0.11 -1.11 8.14 -2.39 -0.02 -1.12 16 47 H 0.04 -0.16 6.59 -2.39 -0.02 -0.18 16 48 H 0.13 -0.48 7.01 -2.39 -0.02 -0.49 16 49 H 0.09 0.22 8.10 -2.39 -0.02 0.20 16 Total: 0.00 -26.15 408.57 0.27 -25.88 By element: Atomic # 1 Polarization: -23.21 SS G_CDS: 0.40 Total: -22.81 kcal Atomic # 6 Polarization: 5.73 SS G_CDS: 4.34 Total: 10.07 kcal Atomic # 8 Polarization: -24.55 SS G_CDS: -8.42 Total: -32.97 kcal Atomic # 9 Polarization: -1.83 SS G_CDS: 2.17 Total: 0.34 kcal Atomic # 14 Polarization: 0.95 SS G_CDS: 2.07 Total: 3.02 kcal Atomic # 16 Polarization: 16.77 SS G_CDS: -0.29 Total: 16.48 kcal Total: -26.15 0.27 -25.88 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_14060150_17541816.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -267.082 kcal (2) G-P(sol) polarization free energy of solvation -26.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -293.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -292.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds