Wall clock time and date at job start Sat Mar 6 2021 01:30:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.36003 * 116.99787 * 2 1 4 4 C 1.38523 * 120.07181 * 0.29975 * 3 2 1 5 5 C 1.38286 * 119.99596 * 180.27601 * 4 3 2 6 6 C 1.50697 * 119.92370 * 179.69915 * 5 4 3 7 7 C 1.38213 * 120.14614 * 359.72011 * 5 4 3 8 8 C 1.50703 * 119.92260 * 180.02562 * 7 5 4 9 9 O 1.42907 * 109.46764 * 284.97231 * 8 7 5 10 10 Si 1.86298 * 109.46824 * 164.97731 * 8 7 5 11 11 C 1.38279 * 120.14529 * 359.97438 * 7 5 4 12 12 C 1.38519 * 120.00516 * 0.02562 * 11 7 5 13 13 O 1.35991 * 120.07736 * 180.02562 * 12 11 7 14 14 S 1.52195 * 114.00120 * 90.00486 * 13 12 11 15 15 O 1.42104 * 104.27748 * 318.93245 * 14 13 12 16 16 O 1.42098 * 104.28177 * 191.07315 * 14 13 12 17 17 C 1.81406 * 104.44878 * 75.00260 * 14 13 12 18 18 H 1.08998 * 112.85108 * 53.80436 * 17 14 13 19 19 C 1.53784 * 113.61313 * 185.00422 * 17 14 13 20 20 C 1.53783 * 87.08027 * 89.19948 * 19 17 14 21 21 H 1.09004 * 113.61403 * 270.79501 * 20 19 17 22 22 C 1.50702 * 113.61300 * 139.98547 * 20 19 17 23 23 C 1.38234 * 120.00257 * 121.52818 * 22 20 19 24 24 C 1.38238 * 119.99675 * 180.25732 * 23 22 20 25 25 C 1.38228 * 120.00114 * 359.50218 * 24 23 22 26 26 C 1.38234 * 120.00051 * 0.47390 * 25 24 23 27 27 C 1.38235 * 119.99522 * 301.49830 * 22 20 19 28 28 C 1.53772 * 87.17556 * 25.39083 * 20 19 17 29 29 H 1.09006 * 109.47244 * 60.00559 * 1 2 3 30 30 H 1.09008 * 109.46830 * 179.97438 * 1 2 3 31 31 H 1.08990 * 109.47365 * 299.99768 * 1 2 3 32 32 H 1.08002 * 120.00256 * 359.97438 * 4 3 2 33 33 H 1.08994 * 109.47175 * 270.01709 * 6 5 4 34 34 H 1.09004 * 109.47450 * 30.02263 * 6 5 4 35 35 H 1.09011 * 109.46653 * 150.01839 * 6 5 4 36 36 H 1.08999 * 109.47558 * 44.97491 * 8 7 5 37 37 H 0.96695 * 113.99883 * 300.00548 * 9 8 7 38 38 H 1.48507 * 110.00035 * 58.67818 * 10 8 7 39 39 H 1.48495 * 110.00037 * 179.97438 * 10 8 7 40 40 H 1.08008 * 119.99616 * 180.02562 * 11 7 5 41 41 H 1.09001 * 113.61160 * 334.64851 * 19 17 14 42 42 H 1.08996 * 113.61216 * 203.74611 * 19 17 14 43 43 H 1.08002 * 119.99744 * 359.97115 * 23 22 20 44 44 H 1.08004 * 119.99577 * 179.72816 * 24 23 22 45 45 H 1.07999 * 119.99925 * 180.25942 * 25 24 23 46 46 H 1.08001 * 120.00294 * 179.78842 * 26 25 24 47 47 H 1.07996 * 120.00471 * 0.02562 * 27 22 20 48 48 H 1.08995 * 113.61713 * 89.15923 * 28 20 19 49 49 H 1.09002 * 113.61377 * 220.06212 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2933 2.3745 0.0063 5 6 1.9227 3.6058 0.0005 6 6 1.1018 4.8696 0.0005 7 6 3.3028 3.6799 -0.0057 8 6 3.9834 5.0245 -0.0114 9 8 3.8823 5.6040 -1.3138 10 14 5.7794 4.8132 0.4364 11 6 4.0604 2.5231 -0.0056 12 6 3.4363 1.2864 0.0002 13 8 4.1799 0.1478 0.0008 14 16 4.5233 -0.3666 1.3914 15 8 4.8426 0.8050 2.1295 16 8 5.4969 -1.3757 1.1614 17 6 2.9782 -1.0991 1.9973 18 1 2.5638 -1.8392 1.3128 19 6 3.0562 -1.5834 3.4548 20 6 2.6074 -0.1710 3.8654 21 1 3.4341 0.5238 4.0140 22 6 1.6206 -0.1584 5.0043 23 6 1.9183 0.5234 6.1694 24 6 1.0152 0.5305 7.2160 25 6 -0.1898 -0.1356 7.0937 26 6 -0.4877 -0.8171 5.9285 27 6 0.4174 -0.8282 4.8836 28 6 1.9503 -0.0594 2.4797 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3633 0.5137 0.8899 32 1 0.2147 2.3193 0.0108 33 1 0.8995 5.1714 -1.0271 34 1 0.1598 4.6911 0.5189 35 1 1.6526 5.6605 0.5098 36 1 3.5022 5.6785 0.7157 37 1 4.2902 5.0746 -2.0126 38 1 6.4394 3.8981 -0.5292 39 1 6.4621 6.1319 0.4338 40 1 5.1387 2.5838 -0.0100 41 1 4.0668 -1.8320 3.7788 42 1 2.3301 -2.3597 3.6963 43 1 2.8583 1.0467 6.2636 44 1 1.2497 1.0595 8.1279 45 1 -0.8970 -0.1266 7.9098 46 1 -1.4277 -1.3404 5.8341 47 1 0.1847 -1.3608 3.9734 48 1 0.9215 -0.4182 2.4541 49 1 2.0695 0.9207 2.0176 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV m_40_14060150_17781816.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 01:30:28 Heat of formation + Delta-G solvation = -71.485890 kcal Electronic energy + Delta-G solvation = -36886.961143 eV Core-core repulsion = 32261.758252 eV Total energy + Delta-G solvation = -4625.202891 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 391.127 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -42.74270 -41.16362 -40.35553 -39.68644 -38.88608 -38.06954 -37.31317 -37.06197 -33.49728 -32.35185 -32.21739 -31.81607 -29.21408 -28.21126 -27.18455 -26.90175 -26.20996 -23.92280 -23.83525 -23.17140 -22.72929 -21.46208 -20.95692 -19.59865 -18.90108 -18.73681 -18.38066 -18.29119 -17.97890 -17.29687 -16.85966 -16.63466 -16.35324 -16.25915 -16.04084 -15.86264 -15.77016 -15.43797 -15.21648 -14.96051 -14.60624 -14.52989 -14.39780 -14.25379 -14.05735 -13.93450 -13.82040 -13.73018 -13.39960 -13.30543 -13.23040 -13.15145 -13.10179 -12.98028 -12.97053 -12.54725 -12.44887 -12.23203 -12.04997 -11.99376 -11.79654 -11.71754 -11.47736 -11.27185 -10.65755 -10.14099 -9.85228 -9.61972 -9.45691 -4.90607 -0.97490 -0.10697 -0.09505 0.38160 0.46857 1.06590 1.23338 1.56610 1.76728 1.92367 2.13155 2.55007 2.73640 2.81864 3.11910 3.27291 3.31059 3.34306 3.40905 3.50662 3.59750 3.69549 3.76176 3.84421 3.90518 3.94018 3.95287 4.07387 4.11079 4.18818 4.22000 4.29670 4.36764 4.39536 4.42837 4.44096 4.46992 4.55391 4.59556 4.60426 4.62335 4.64863 4.66252 4.78370 4.81324 5.01999 5.04341 5.06515 5.15249 5.24655 5.32542 5.53675 5.60769 5.69129 5.89565 6.06395 6.32747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.306 6.306 3 C 0.146 3.854 4 C -0.201 4.201 5 C 0.008 3.992 6 C -0.122 4.122 7 C -0.143 4.143 8 C -0.065 4.065 9 O -0.526 6.526 10 Si 0.679 3.321 11 C -0.049 4.049 12 C 0.027 3.973 13 O -0.649 6.649 14 S 2.604 3.396 15 O -0.944 6.944 16 O -0.926 6.926 17 C -0.643 4.643 18 H 0.152 0.848 19 C -0.088 4.088 20 C -0.094 4.094 21 H 0.122 0.878 22 C -0.069 4.069 23 C -0.112 4.112 24 C -0.116 4.116 25 C -0.123 4.123 26 C -0.118 4.118 27 C -0.119 4.119 28 C -0.085 4.085 29 H 0.064 0.936 30 H 0.108 0.892 31 H 0.064 0.936 32 H 0.148 0.852 33 H 0.085 0.915 34 H 0.071 0.929 35 H 0.080 0.920 36 H 0.125 0.875 37 H 0.377 0.623 38 H -0.257 1.257 39 H -0.249 1.249 40 H 0.150 0.850 41 H 0.080 0.920 42 H 0.106 0.894 43 H 0.125 0.875 44 H 0.123 0.877 45 H 0.121 0.879 46 H 0.121 0.879 47 H 0.120 0.880 48 H 0.101 0.899 49 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.028 1.367 1.922 7.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.219 6.219 3 C 0.097 3.903 4 C -0.220 4.220 5 C 0.007 3.993 6 C -0.179 4.179 7 C -0.143 4.143 8 C -0.175 4.175 9 O -0.333 6.333 10 Si 0.580 3.420 11 C -0.069 4.069 12 C -0.015 4.015 13 O -0.608 6.608 14 S 2.698 3.302 15 O -0.943 6.943 16 O -0.925 6.925 17 C -0.749 4.749 18 H 0.170 0.830 19 C -0.126 4.126 20 C -0.113 4.113 21 H 0.140 0.860 22 C -0.069 4.069 23 C -0.130 4.130 24 C -0.134 4.134 25 C -0.141 4.141 26 C -0.136 4.136 27 C -0.137 4.137 28 C -0.123 4.123 29 H 0.083 0.917 30 H 0.127 0.873 31 H 0.083 0.917 32 H 0.166 0.834 33 H 0.103 0.897 34 H 0.090 0.910 35 H 0.098 0.902 36 H 0.143 0.857 37 H 0.225 0.775 38 H -0.182 1.182 39 H -0.174 1.174 40 H 0.167 0.833 41 H 0.098 0.902 42 H 0.124 0.876 43 H 0.143 0.857 44 H 0.141 0.859 45 H 0.139 0.861 46 H 0.139 0.861 47 H 0.138 0.862 48 H 0.119 0.881 49 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -5.675 1.797 1.797 6.218 hybrid contribution -1.062 -0.784 -1.136 1.741 sum -6.737 1.013 0.661 6.844 Atomic orbital electron populations 1.23296 0.77098 1.05061 1.02249 1.86234 1.22505 1.25368 1.87784 1.18928 0.90159 0.86105 0.95059 1.21101 1.00720 0.90515 1.09622 1.19791 0.92918 0.95143 0.91478 1.20962 0.99162 0.94065 1.03662 1.19907 0.93522 0.94909 1.06004 1.24861 1.11251 0.92848 0.88591 1.86608 1.80605 1.49930 1.16121 0.94599 0.74438 0.81496 0.91458 1.21136 1.01282 0.89722 0.94736 1.17045 0.85554 0.82676 1.16226 1.85730 1.72304 1.45607 1.57118 1.05281 0.76212 0.75284 0.73379 1.93625 1.82602 1.45843 1.72189 1.93652 1.55375 1.60853 1.82571 1.32453 1.21142 1.12689 1.08654 0.82985 1.22653 1.03539 0.97687 0.88759 1.22016 0.98552 0.97991 0.92702 0.86024 1.19548 0.94742 0.97809 0.94760 1.21146 0.99777 0.99128 0.92984 1.21208 0.94124 0.99277 0.98835 1.21207 0.97182 0.97790 0.97908 1.21151 0.99445 0.99399 0.93649 1.20982 0.93868 0.99869 0.98987 1.22927 0.98258 0.96751 0.94323 0.91735 0.87328 0.91711 0.83433 0.89699 0.90962 0.90156 0.85706 0.77534 1.18204 1.17381 0.83271 0.90158 0.87595 0.85677 0.85879 0.86066 0.86081 0.86207 0.88051 0.90155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.08 8.95 101.05 0.90 0.83 16 2 O -0.31 0.36 6.80 -34.23 -0.23 0.13 16 3 C 0.15 0.00 3.82 -39.12 -0.15 -0.15 16 4 C -0.20 0.33 8.54 -39.46 -0.34 0.00 16 5 C 0.01 -0.01 5.88 -104.61 -0.62 -0.62 16 6 C -0.12 0.33 9.53 36.00 0.34 0.67 16 7 C -0.14 0.03 5.26 -104.61 -0.55 -0.52 16 8 C -0.07 0.06 2.04 36.01 0.07 0.13 16 9 O -0.53 0.05 12.80 -35.23 -0.45 -0.40 16 10 Si 0.68 -0.10 30.24 -169.99 -5.14 -5.24 16 11 C -0.05 -0.07 7.65 -39.46 -0.30 -0.37 16 12 C 0.03 0.06 4.33 -39.12 -0.17 -0.11 16 13 O -0.65 -2.21 9.84 -54.21 -0.53 -2.75 16 14 S 2.60 8.00 5.07 -107.50 -0.55 7.46 16 15 O -0.94 -3.20 14.54 -67.04 -0.97 -4.18 16 16 O -0.93 -6.17 18.09 -67.04 -1.21 -7.38 16 17 C -0.64 0.17 3.39 -25.82 -0.09 0.08 16 18 H 0.15 -0.25 7.85 -51.93 -0.41 -0.66 16 19 C -0.09 0.07 7.15 -25.92 -0.19 -0.12 16 20 C -0.09 0.04 3.58 -90.96 -0.33 -0.29 16 21 H 0.12 0.00 6.84 -51.93 -0.36 -0.36 16 22 C -0.07 0.00 5.29 -104.62 -0.55 -0.56 16 23 C -0.11 -0.03 9.71 -39.58 -0.38 -0.42 16 24 C -0.12 -0.01 10.05 -39.59 -0.40 -0.40 16 25 C -0.12 0.01 10.05 -39.59 -0.40 -0.38 16 26 C -0.12 0.05 10.05 -39.58 -0.40 -0.35 16 27 C -0.12 0.07 8.54 -39.58 -0.34 -0.27 16 28 C -0.08 0.11 4.33 -25.83 -0.11 -0.01 16 29 H 0.06 -0.33 7.68 -51.93 -0.40 -0.73 16 30 H 0.11 -0.64 8.14 -51.92 -0.42 -1.06 16 31 H 0.06 -0.37 7.21 -51.93 -0.37 -0.75 16 32 H 0.15 -0.62 6.30 -52.49 -0.33 -0.95 16 33 H 0.08 -0.21 8.14 -51.93 -0.42 -0.63 16 34 H 0.07 -0.28 8.08 -51.93 -0.42 -0.70 16 35 H 0.08 -0.22 6.22 -51.92 -0.32 -0.55 16 36 H 0.13 -0.28 6.48 -51.93 -0.34 -0.62 16 37 H 0.38 -0.95 8.70 45.56 0.40 -0.55 16 38 H -0.26 -0.43 6.68 56.52 0.38 -0.06 16 39 H -0.25 -0.59 7.11 56.52 0.40 -0.19 16 40 H 0.15 0.16 4.85 -52.48 -0.25 -0.09 16 41 H 0.08 -0.08 8.10 -51.93 -0.42 -0.50 16 42 H 0.11 -0.20 7.64 -51.93 -0.40 -0.59 16 43 H 0.13 -0.12 8.05 -52.49 -0.42 -0.54 16 44 H 0.12 -0.18 8.06 -52.48 -0.42 -0.61 16 45 H 0.12 -0.20 8.06 -52.49 -0.42 -0.62 16 46 H 0.12 -0.25 8.06 -52.49 -0.42 -0.67 16 47 H 0.12 -0.28 6.73 -52.49 -0.35 -0.63 16 48 H 0.10 -0.29 5.30 -51.93 -0.28 -0.57 16 49 H 0.08 -0.08 4.57 -51.93 -0.24 -0.32 16 LS Contribution 390.38 15.07 5.88 5.88 Total: 0.00 -8.84 390.38 -13.43 -22.27 By element: Atomic # 1 Polarization: -6.68 SS G_CDS: -6.25 Total: -12.93 kcal Atomic # 6 Polarization: 1.12 SS G_CDS: -3.98 Total: -2.86 kcal Atomic # 8 Polarization: -11.17 SS G_CDS: -3.40 Total: -14.58 kcal Atomic # 14 Polarization: -0.10 SS G_CDS: -5.14 Total: -5.24 kcal Atomic # 16 Polarization: 8.00 SS G_CDS: -0.55 Total: 7.46 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -8.84 -13.43 -22.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_14060150_17781816.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.215 kcal (2) G-P(sol) polarization free energy of solvation -8.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds