Wall clock time and date at job start Sat Mar 6 2021 01:30:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.36003 * 116.99787 * 2 1 4 4 C 1.38523 * 120.07181 * 0.29975 * 3 2 1 5 5 C 1.38286 * 119.99596 * 180.27601 * 4 3 2 6 6 C 1.50697 * 119.92370 * 179.69915 * 5 4 3 7 7 C 1.38213 * 120.14614 * 359.72011 * 5 4 3 8 8 C 1.50703 * 119.92260 * 180.02562 * 7 5 4 9 9 O 1.42907 * 109.46764 * 284.97231 * 8 7 5 10 10 Si 1.86298 * 109.46824 * 164.97731 * 8 7 5 11 11 C 1.38279 * 120.14529 * 359.97438 * 7 5 4 12 12 C 1.38519 * 120.00516 * 0.02562 * 11 7 5 13 13 O 1.35991 * 120.07736 * 180.02562 * 12 11 7 14 14 S 1.52195 * 114.00120 * 90.00486 * 13 12 11 15 15 O 1.42104 * 104.27748 * 318.93245 * 14 13 12 16 16 O 1.42098 * 104.28177 * 191.07315 * 14 13 12 17 17 C 1.81406 * 104.44878 * 75.00260 * 14 13 12 18 18 H 1.08998 * 112.85108 * 53.80436 * 17 14 13 19 19 C 1.53784 * 113.61313 * 185.00422 * 17 14 13 20 20 C 1.53783 * 87.08027 * 89.19948 * 19 17 14 21 21 H 1.09004 * 113.61403 * 270.79501 * 20 19 17 22 22 C 1.50702 * 113.61300 * 139.98547 * 20 19 17 23 23 C 1.38234 * 120.00257 * 121.52818 * 22 20 19 24 24 C 1.38238 * 119.99675 * 180.25732 * 23 22 20 25 25 C 1.38228 * 120.00114 * 359.50218 * 24 23 22 26 26 C 1.38234 * 120.00051 * 0.47390 * 25 24 23 27 27 C 1.38235 * 119.99522 * 301.49830 * 22 20 19 28 28 C 1.53772 * 87.17556 * 25.39083 * 20 19 17 29 29 H 1.09006 * 109.47244 * 60.00559 * 1 2 3 30 30 H 1.09008 * 109.46830 * 179.97438 * 1 2 3 31 31 H 1.08990 * 109.47365 * 299.99768 * 1 2 3 32 32 H 1.08002 * 120.00256 * 359.97438 * 4 3 2 33 33 H 1.08994 * 109.47175 * 270.01709 * 6 5 4 34 34 H 1.09004 * 109.47450 * 30.02263 * 6 5 4 35 35 H 1.09011 * 109.46653 * 150.01839 * 6 5 4 36 36 H 1.08999 * 109.47558 * 44.97491 * 8 7 5 37 37 H 0.96695 * 113.99883 * 300.00548 * 9 8 7 38 38 H 1.48507 * 110.00035 * 58.67818 * 10 8 7 39 39 H 1.48495 * 110.00037 * 179.97438 * 10 8 7 40 40 H 1.08008 * 119.99616 * 180.02562 * 11 7 5 41 41 H 1.09001 * 113.61160 * 334.64851 * 19 17 14 42 42 H 1.08996 * 113.61216 * 203.74611 * 19 17 14 43 43 H 1.08002 * 119.99744 * 359.97115 * 23 22 20 44 44 H 1.08004 * 119.99577 * 179.72816 * 24 23 22 45 45 H 1.07999 * 119.99925 * 180.25942 * 25 24 23 46 46 H 1.08001 * 120.00294 * 179.78842 * 26 25 24 47 47 H 1.07996 * 120.00471 * 0.02562 * 27 22 20 48 48 H 1.08995 * 113.61713 * 89.15923 * 28 20 19 49 49 H 1.09002 * 113.61377 * 220.06212 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2933 2.3745 0.0063 5 6 1.9227 3.6058 0.0005 6 6 1.1018 4.8696 0.0005 7 6 3.3028 3.6799 -0.0057 8 6 3.9834 5.0245 -0.0114 9 8 3.8823 5.6040 -1.3138 10 14 5.7794 4.8132 0.4364 11 6 4.0604 2.5231 -0.0056 12 6 3.4363 1.2864 0.0002 13 8 4.1799 0.1478 0.0008 14 16 4.5233 -0.3666 1.3914 15 8 4.8426 0.8050 2.1295 16 8 5.4969 -1.3757 1.1614 17 6 2.9782 -1.0991 1.9973 18 1 2.5638 -1.8392 1.3128 19 6 3.0562 -1.5834 3.4548 20 6 2.6074 -0.1710 3.8654 21 1 3.4341 0.5238 4.0140 22 6 1.6206 -0.1584 5.0043 23 6 1.9183 0.5234 6.1694 24 6 1.0152 0.5305 7.2160 25 6 -0.1898 -0.1356 7.0937 26 6 -0.4877 -0.8171 5.9285 27 6 0.4174 -0.8282 4.8836 28 6 1.9503 -0.0594 2.4797 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3633 0.5137 0.8899 32 1 0.2147 2.3193 0.0108 33 1 0.8995 5.1714 -1.0271 34 1 0.1598 4.6911 0.5189 35 1 1.6526 5.6605 0.5098 36 1 3.5022 5.6785 0.7157 37 1 4.2902 5.0746 -2.0126 38 1 6.4394 3.8981 -0.5292 39 1 6.4621 6.1319 0.4338 40 1 5.1387 2.5838 -0.0100 41 1 4.0668 -1.8320 3.7788 42 1 2.3301 -2.3597 3.6963 43 1 2.8583 1.0467 6.2636 44 1 1.2497 1.0595 8.1279 45 1 -0.8970 -0.1266 7.9098 46 1 -1.4277 -1.3404 5.8341 47 1 0.1847 -1.3608 3.9734 48 1 0.9215 -0.4182 2.4541 49 1 2.0695 0.9207 2.0176 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_40_14060150_17781816.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 01:30:27 Heat of formation + Delta-G solvation = -68.697661 kcal Electronic energy + Delta-G solvation = -36886.840236 eV Core-core repulsion = 32261.758252 eV Total energy + Delta-G solvation = -4625.081984 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 391.127 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -42.72694 -41.11036 -40.34842 -39.57079 -38.85738 -38.29671 -37.32356 -37.26403 -33.40114 -32.26648 -32.13801 -31.72129 -28.89454 -28.09267 -27.09195 -26.86878 -26.11111 -23.87990 -23.76445 -23.12309 -22.65866 -21.48462 -20.94034 -19.66264 -18.96773 -18.64641 -18.40224 -18.24401 -17.91419 -17.27116 -16.75623 -16.66254 -16.29422 -16.20646 -15.94263 -15.85120 -15.73589 -15.32798 -15.18642 -14.89646 -14.57535 -14.39501 -14.32898 -14.15465 -14.10436 -14.03252 -13.72500 -13.62383 -13.49956 -13.33861 -13.23514 -13.15867 -13.12187 -12.91597 -12.82348 -12.43334 -12.32274 -12.17797 -11.91443 -11.90235 -11.78708 -11.72138 -11.40659 -11.24857 -10.65237 -10.05921 -9.77230 -9.54557 -9.38419 -4.96082 -1.09764 -0.09396 -0.03197 0.45577 0.54719 0.95200 1.22361 1.47674 1.82239 1.97347 2.20118 2.43340 2.68029 2.86546 3.13882 3.29074 3.36130 3.42721 3.53041 3.55879 3.66225 3.77260 3.84865 3.94028 4.05081 4.19640 4.21139 4.27405 4.31338 4.34694 4.41836 4.46017 4.52378 4.54209 4.55968 4.64375 4.65957 4.67873 4.69941 4.70816 4.74652 4.84054 4.85565 4.86430 4.94289 5.14131 5.17603 5.18306 5.23993 5.38943 5.48384 5.62516 5.69202 5.76668 6.08431 6.16309 6.44356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.003 3.997 2 O -0.316 6.316 3 C 0.150 3.850 4 C -0.194 4.194 5 C 0.011 3.989 6 C -0.123 4.123 7 C -0.145 4.145 8 C -0.053 4.053 9 O -0.535 6.535 10 Si 0.714 3.286 11 C -0.067 4.067 12 C -0.005 4.005 13 O -0.661 6.661 14 S 2.595 3.405 15 O -0.959 6.959 16 O -0.977 6.977 17 C -0.624 4.624 18 H 0.171 0.829 19 C -0.092 4.092 20 C -0.098 4.098 21 H 0.110 0.890 22 C -0.074 4.074 23 C -0.130 4.130 24 C -0.129 4.129 25 C -0.135 4.135 26 C -0.126 4.126 27 C -0.122 4.122 28 C -0.078 4.078 29 H 0.072 0.928 30 H 0.124 0.876 31 H 0.083 0.917 32 H 0.180 0.820 33 H 0.085 0.915 34 H 0.091 0.909 35 H 0.081 0.919 36 H 0.145 0.855 37 H 0.386 0.614 38 H -0.291 1.291 39 H -0.283 1.283 40 H 0.138 0.862 41 H 0.076 0.924 42 H 0.125 0.875 43 H 0.127 0.873 44 H 0.131 0.869 45 H 0.132 0.868 46 H 0.138 0.862 47 H 0.141 0.859 48 H 0.127 0.873 49 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.699 1.284 2.137 10.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 O -0.229 6.229 3 C 0.102 3.898 4 C -0.213 4.213 5 C 0.010 3.990 6 C -0.179 4.179 7 C -0.146 4.146 8 C -0.164 4.164 9 O -0.343 6.343 10 Si 0.621 3.379 11 C -0.087 4.087 12 C -0.047 4.047 13 O -0.620 6.620 14 S 2.694 3.306 15 O -0.957 6.957 16 O -0.975 6.975 17 C -0.735 4.735 18 H 0.189 0.811 19 C -0.130 4.130 20 C -0.117 4.117 21 H 0.128 0.872 22 C -0.074 4.074 23 C -0.148 4.148 24 C -0.147 4.147 25 C -0.153 4.153 26 C -0.143 4.143 27 C -0.139 4.139 28 C -0.116 4.116 29 H 0.091 0.909 30 H 0.143 0.857 31 H 0.102 0.898 32 H 0.197 0.803 33 H 0.104 0.896 34 H 0.110 0.890 35 H 0.100 0.900 36 H 0.163 0.837 37 H 0.235 0.765 38 H -0.218 1.218 39 H -0.210 1.210 40 H 0.155 0.845 41 H 0.095 0.905 42 H 0.144 0.856 43 H 0.145 0.855 44 H 0.149 0.851 45 H 0.150 0.850 46 H 0.156 0.844 47 H 0.159 0.841 48 H 0.145 0.855 49 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -9.309 1.718 2.008 9.677 hybrid contribution 0.044 -0.756 -1.218 1.434 sum -9.265 0.962 0.790 9.349 Atomic orbital electron populations 1.23661 0.75177 1.06659 1.03587 1.86232 1.24462 1.24819 1.87426 1.18951 0.89372 0.87184 0.94337 1.21439 1.02097 0.89516 1.08205 1.20048 0.92441 0.96259 0.90239 1.21031 0.99746 0.93104 1.03983 1.19910 0.94173 0.94237 1.06315 1.24733 1.09729 0.93200 0.88779 1.86581 1.80591 1.50546 1.16570 0.94168 0.74877 0.78116 0.90758 1.21184 1.01059 0.90559 0.95902 1.17403 0.86682 0.82239 1.18377 1.85695 1.73017 1.46378 1.56955 1.05352 0.77243 0.74724 0.73277 1.93590 1.83593 1.46197 1.72330 1.93581 1.58468 1.61981 1.83482 1.32174 1.18727 1.13331 1.09234 0.81140 1.22812 1.04032 0.98152 0.88030 1.21997 0.98440 0.97913 0.93302 0.87201 1.19618 0.95153 0.98035 0.94593 1.21330 1.00177 0.99756 0.93545 1.21402 0.94397 0.99665 0.99215 1.21459 0.97343 0.97856 0.98660 1.21432 1.00194 0.99243 0.93480 1.21217 0.93333 0.99584 0.99786 1.23042 0.98986 0.96439 0.93125 0.90903 0.85749 0.89844 0.80317 0.89604 0.89015 0.89989 0.83725 0.76529 1.21807 1.21002 0.84483 0.90521 0.85641 0.85529 0.85074 0.84972 0.84408 0.84119 0.85457 0.90235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.03 8.95 113.37 1.01 0.98 16 2 O -0.32 1.28 6.80 -79.74 -0.54 0.74 16 3 C 0.15 -0.13 3.82 22.57 0.09 -0.05 16 4 C -0.19 1.05 8.54 22.35 0.19 1.24 16 5 C 0.01 -0.04 5.88 -19.86 -0.12 -0.16 16 6 C -0.12 0.95 9.53 71.24 0.68 1.63 16 7 C -0.15 0.04 5.26 -19.86 -0.10 -0.07 16 8 C -0.05 0.08 2.04 71.24 0.15 0.22 16 9 O -0.54 0.06 12.80 -148.98 -1.91 -1.84 16 10 Si 0.71 1.45 30.24 68.60 2.07 3.53 16 11 C -0.07 -0.30 7.65 22.35 0.17 -0.13 16 12 C 0.00 -0.03 4.33 22.57 0.10 0.07 16 13 O -0.66 -5.98 9.84 -60.47 -0.60 -6.58 16 14 S 2.59 21.57 5.07 -56.49 -0.29 21.29 16 15 O -0.96 -9.07 14.54 -118.57 -1.72 -10.80 16 16 O -0.98 -16.13 18.09 -118.57 -2.15 -18.28 16 17 C -0.62 0.49 3.39 31.18 0.11 0.60 16 18 H 0.17 -0.76 7.85 -2.39 -0.02 -0.78 16 19 C -0.09 0.17 7.15 31.12 0.22 0.40 16 20 C -0.10 0.11 3.58 -11.02 -0.04 0.07 16 21 H 0.11 0.13 6.84 -2.38 -0.02 0.11 16 22 C -0.07 0.05 5.29 -19.87 -0.11 -0.05 16 23 C -0.13 -0.10 9.71 22.27 0.22 0.12 16 24 C -0.13 0.00 10.05 22.27 0.22 0.22 16 25 C -0.14 0.15 10.05 22.27 0.22 0.37 16 26 C -0.13 0.32 10.05 22.27 0.22 0.55 16 27 C -0.12 0.38 8.54 22.27 0.19 0.57 16 28 C -0.08 0.30 4.33 31.18 0.13 0.44 16 29 H 0.07 -0.97 7.68 -2.38 -0.02 -0.99 16 30 H 0.12 -1.87 8.14 -2.38 -0.02 -1.89 16 31 H 0.08 -1.30 7.21 -2.39 -0.02 -1.32 16 32 H 0.18 -2.18 6.30 -2.91 -0.02 -2.20 16 33 H 0.09 -0.62 8.14 -2.39 -0.02 -0.64 16 34 H 0.09 -1.03 8.08 -2.39 -0.02 -1.05 16 35 H 0.08 -0.63 6.22 -2.38 -0.01 -0.64 16 36 H 0.15 -0.78 6.48 -2.39 -0.02 -0.80 16 37 H 0.39 -1.65 8.70 -74.06 -0.64 -2.29 16 38 H -0.29 -2.12 6.68 99.48 0.66 -1.45 16 39 H -0.28 -2.12 7.11 99.48 0.71 -1.41 16 40 H 0.14 0.78 4.85 -2.91 -0.01 0.76 16 41 H 0.08 -0.08 8.10 -2.39 -0.02 -0.10 16 42 H 0.13 -0.70 7.64 -2.39 -0.02 -0.72 16 43 H 0.13 -0.09 8.05 -2.91 -0.02 -0.12 16 44 H 0.13 -0.36 8.06 -2.91 -0.02 -0.39 16 45 H 0.13 -0.55 8.06 -2.91 -0.02 -0.57 16 46 H 0.14 -0.89 8.06 -2.91 -0.02 -0.91 16 47 H 0.14 -1.13 6.73 -2.91 -0.02 -1.15 16 48 H 0.13 -1.16 5.30 -2.39 -0.01 -1.17 16 49 H 0.08 -0.24 4.57 -2.39 -0.01 -0.25 16 Total: 0.00 -23.67 390.38 -1.20 -24.87 By element: Atomic # 1 Polarization: -20.32 SS G_CDS: 0.36 Total: -19.96 kcal Atomic # 6 Polarization: 3.47 SS G_CDS: 3.56 Total: 7.03 kcal Atomic # 8 Polarization: -29.84 SS G_CDS: -6.91 Total: -36.75 kcal Atomic # 14 Polarization: 1.45 SS G_CDS: 2.07 Total: 3.53 kcal Atomic # 16 Polarization: 21.57 SS G_CDS: -0.29 Total: 21.29 kcal Total: -23.67 -1.20 -24.87 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_14060150_17781816.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.825 kcal (2) G-P(sol) polarization free energy of solvation -23.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds