Wall clock time and date at job start Fri Mar 5 2021 22:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47070 * 2 1 4 4 C 1.52998 * 109.47377 * 239.99800 * 2 1 3 5 5 O 1.45204 * 109.46739 * 119.99728 * 2 1 3 6 6 C 1.34637 * 117.00259 * 60.00224 * 5 2 1 7 7 O 1.21512 * 119.99734 * 359.97438 * 6 5 2 8 8 N 1.34772 * 119.99984 * 179.97438 * 6 5 2 9 9 C 1.46506 * 119.99652 * 179.97438 * 8 6 5 10 10 C 1.53003 * 109.46548 * 180.02562 * 9 8 6 11 11 H 1.08994 * 112.85499 * 43.80687 * 10 9 8 12 12 C 1.53781 * 113.60905 * 175.00242 * 10 9 8 13 13 C 1.53782 * 87.08286 * 89.11362 * 12 10 9 14 14 F 1.39895 * 113.61516 * 270.79982 * 13 12 10 15 15 C 1.53007 * 113.61202 * 139.97863 * 13 12 10 16 16 N 1.46499 * 109.46714 * 180.02562 * 15 13 12 17 17 S 1.65603 * 120.00058 * 165.00078 * 16 15 13 18 18 O 1.42109 * 106.40029 * 311.46172 * 17 16 15 19 19 O 1.42102 * 106.40321 * 178.54271 * 17 16 15 20 20 C 1.76194 * 107.21738 * 64.99856 * 17 16 15 21 21 C 1.33395 * 125.20488 * 180.34126 * 20 17 16 22 22 C 1.50697 * 122.53872 * 359.97000 * 21 20 17 23 23 O 1.42904 * 109.47323 * 285.28255 * 22 21 20 24 24 Si 1.86297 * 109.47058 * 165.28211 * 22 21 20 25 25 C 1.38421 * 114.92147 * 180.21225 * 21 20 17 26 26 C 1.33388 * 114.92066 * 359.48238 * 25 21 20 27 27 S 1.75885 * 109.59458 * 0.27968 * 26 25 21 28 28 C 1.53779 * 87.08089 * 25.43245 * 13 12 10 29 29 H 1.08999 * 109.47566 * 300.00068 * 1 2 3 30 30 H 1.09004 * 109.46902 * 60.00475 * 1 2 3 31 31 H 1.08999 * 109.47143 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46950 * 179.97438 * 3 2 1 33 33 H 1.09004 * 109.46869 * 299.99545 * 3 2 1 34 34 H 1.08999 * 109.46981 * 59.99574 * 3 2 1 35 35 H 1.08999 * 109.47073 * 300.00152 * 4 2 1 36 36 H 1.08998 * 109.46893 * 59.99976 * 4 2 1 37 37 H 1.08996 * 109.46925 * 180.02562 * 4 2 1 38 38 H 0.96998 * 120.00496 * 0.02562 * 8 6 5 39 39 H 1.09000 * 109.47158 * 60.00606 * 9 8 6 40 40 H 1.09003 * 109.47006 * 300.00103 * 9 8 6 41 41 H 1.09004 * 113.61673 * 334.56409 * 12 10 9 42 42 H 1.09004 * 113.61601 * 203.66100 * 12 10 9 43 43 H 1.08993 * 109.47059 * 60.00629 * 15 13 12 44 44 H 1.09001 * 109.47189 * 299.99964 * 15 13 12 45 45 H 0.97006 * 120.00299 * 345.00206 * 16 15 13 46 46 H 1.09001 * 109.47054 * 45.28452 * 22 21 20 47 47 H 0.96695 * 113.99936 * 300.00410 * 23 22 21 48 48 H 1.48509 * 109.99987 * 180.02562 * 24 22 21 49 49 H 1.48494 * 109.99892 * 301.31633 * 24 22 21 50 50 H 1.08002 * 122.54201 * 179.76212 * 25 21 20 51 51 H 1.08005 * 125.20509 * 180.28882 * 26 25 21 52 52 H 1.08999 * 113.61771 * 89.11041 * 28 13 12 53 53 H 1.08993 * 113.61535 * 220.01923 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 8 2.0139 -0.6845 1.1856 6 6 1.6522 -1.9723 1.3385 7 8 0.9509 -2.5094 0.5041 8 7 2.0679 -2.6656 2.4168 9 6 1.6738 -4.0668 2.5834 10 6 2.2740 -4.6146 3.8798 11 1 2.1798 -3.9217 4.7158 12 6 1.8202 -6.0459 4.2118 13 6 3.0221 -6.5344 3.3863 14 9 2.7354 -6.7088 2.0281 15 6 3.7397 -7.7377 4.0013 16 7 4.8641 -8.1253 3.1459 17 16 6.0355 -9.1411 3.7278 18 8 6.4201 -8.6257 4.9950 19 8 6.9524 -9.3483 2.6622 20 6 5.2700 -10.6979 4.0354 21 6 5.8883 -11.7770 4.5177 22 6 7.3553 -11.7842 4.8627 23 8 8.1272 -11.8257 3.6608 24 14 7.7417 -13.2820 5.9009 25 6 5.0817 -12.8912 4.6722 26 6 3.8059 -12.7139 4.3257 27 16 3.5718 -11.0647 3.7608 28 6 3.6908 -5.1877 3.7087 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8901 34 1 1.6766 1.9563 0.8899 35 1 1.6767 -1.7489 -1.2492 36 1 1.6767 -0.2075 -2.1391 37 1 3.1300 -0.7216 -1.2489 38 1 2.6275 -2.2367 3.0831 39 1 2.0396 -4.6500 1.7383 40 1 0.5869 -4.1355 2.6290 41 1 0.8559 -6.3101 3.7776 42 1 1.8898 -6.2913 5.2716 43 1 3.0431 -8.5717 4.0863 44 1 4.1112 -7.4723 4.9911 45 1 4.9225 -7.7870 2.2387 46 1 7.6014 -10.8813 5.4217 47 1 7.9593 -12.6040 3.1122 48 1 9.1854 -13.3004 6.2484 49 1 6.9220 -13.2669 7.1390 50 1 5.4559 -13.8316 5.0493 51 1 3.0345 -13.4677 4.3832 52 1 4.2717 -5.1982 4.6309 53 1 4.2366 -4.7589 2.8683 There are 76 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 76 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_40_16498496_13652106.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 5 2021 22:55:37 Heat of formation + Delta-G solvation = -170.298745 kcal Electronic energy + Delta-G solvation = -39378.118368 eV Core-core repulsion = 34000.005024 eV Total energy + Delta-G solvation = -5378.113344 eV No. of doubly occupied orbitals = 76 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 437.127 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -48.88604 -41.84904 -40.07910 -39.99493 -38.47805 -38.28407 -37.20794 -37.06613 -36.49096 -35.56082 -34.68505 -31.45455 -29.90568 -28.40100 -28.32984 -28.10703 -27.20738 -26.84274 -24.33943 -23.52019 -22.91702 -21.76306 -21.26217 -20.36923 -19.97601 -19.74143 -19.03507 -18.80138 -18.32806 -17.83492 -17.62924 -17.39262 -17.03250 -16.90582 -16.72408 -16.37435 -16.16089 -16.09897 -15.87456 -15.72212 -15.54656 -15.34148 -15.14779 -14.89612 -14.69859 -14.52080 -14.25049 -14.16540 -13.97791 -13.80386 -13.71171 -13.55111 -13.41948 -13.37206 -13.32039 -13.23426 -13.02410 -12.94622 -12.89612 -12.78095 -12.57701 -12.53537 -12.40043 -12.32246 -12.25214 -12.09189 -11.80023 -11.43814 -11.42522 -11.29884 -11.14827 -10.77304 -10.63035 -10.41707 -10.24826 -9.63422 -5.09255 -0.89068 -0.68157 0.19154 0.65173 1.12257 1.14215 1.27680 1.62056 1.71544 1.75700 1.92625 2.43036 3.01804 3.08141 3.17959 3.19087 3.31746 3.40982 3.42503 3.50382 3.58406 3.71410 3.76491 3.89933 3.91571 3.98809 4.10275 4.19249 4.26482 4.27731 4.40317 4.47165 4.54774 4.57326 4.58260 4.67140 4.70082 4.71238 4.73280 4.77104 4.82109 4.84729 4.88559 4.90489 4.95620 5.00277 5.09589 5.10221 5.22308 5.23937 5.28948 5.33199 5.55617 5.71851 6.35147 6.63058 7.29987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.127 3.873 3 C -0.137 4.137 4 C -0.180 4.180 5 O -0.369 6.369 6 C 0.641 3.359 7 O -0.596 6.596 8 N -0.698 5.698 9 C 0.147 3.853 10 C -0.117 4.117 11 H 0.122 0.878 12 C -0.130 4.130 13 C 0.077 3.923 14 F -0.195 7.195 15 C 0.096 3.904 16 N -1.110 6.110 17 S 2.727 3.273 18 O -0.979 6.979 19 O -0.966 6.966 20 C -0.798 4.798 21 C -0.001 4.001 22 C -0.127 4.127 23 O -0.543 6.543 24 Si 0.820 3.180 25 C -0.168 4.168 26 C -0.148 4.148 27 S 0.222 5.778 28 C -0.154 4.154 29 H 0.063 0.937 30 H 0.087 0.913 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.099 0.901 34 H 0.070 0.930 35 H 0.062 0.938 36 H 0.087 0.913 37 H 0.060 0.940 38 H 0.418 0.582 39 H 0.064 0.936 40 H 0.071 0.929 41 H 0.093 0.907 42 H 0.139 0.861 43 H 0.091 0.909 44 H 0.116 0.884 45 H 0.429 0.571 46 H 0.097 0.903 47 H 0.399 0.601 48 H -0.292 1.292 49 H -0.270 1.270 50 H 0.189 0.811 51 H 0.215 0.785 52 H 0.125 0.875 53 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.740 -3.421 3.953 7.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.090 3.910 3 C -0.194 4.194 4 C -0.238 4.238 5 O -0.284 6.284 6 C 0.394 3.606 7 O -0.487 6.487 8 N -0.358 5.358 9 C 0.025 3.975 10 C -0.136 4.136 11 H 0.140 0.860 12 C -0.168 4.168 13 C 0.057 3.943 14 F -0.176 7.176 15 C -0.030 4.030 16 N -0.874 5.874 17 S 2.814 3.186 18 O -0.969 6.969 19 O -0.956 6.956 20 C -1.001 5.001 21 C -0.020 4.020 22 C -0.236 4.236 23 O -0.351 6.351 24 Si 0.721 3.279 25 C -0.197 4.197 26 C -0.285 4.285 27 S 0.488 5.512 28 C -0.191 4.191 29 H 0.082 0.918 30 H 0.106 0.894 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.117 0.883 34 H 0.089 0.911 35 H 0.081 0.919 36 H 0.106 0.894 37 H 0.079 0.921 38 H 0.255 0.745 39 H 0.082 0.918 40 H 0.089 0.911 41 H 0.112 0.888 42 H 0.157 0.843 43 H 0.109 0.891 44 H 0.134 0.866 45 H 0.267 0.733 46 H 0.115 0.885 47 H 0.250 0.750 48 H -0.219 1.219 49 H -0.196 1.196 50 H 0.206 0.794 51 H 0.232 0.768 52 H 0.143 0.857 53 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -6.030 -2.390 4.198 7.726 hybrid contribution 0.887 -0.165 -0.198 0.924 sum -5.143 -2.555 4.000 6.998 Atomic orbital electron populations 1.22469 0.93938 1.03667 1.03590 1.22362 0.94554 0.92596 0.81444 1.21891 1.02421 0.90803 1.04317 1.22475 1.01576 1.02211 0.97508 1.86307 1.71571 1.23244 1.47264 1.18362 0.78841 0.80827 0.82524 1.90913 1.42346 1.71051 1.44356 1.44667 1.55282 1.12668 1.23219 1.21302 0.99927 0.78372 0.97929 1.22487 0.95592 0.98210 0.97290 0.86026 1.23649 0.97295 0.93029 1.02839 1.22269 0.99132 0.95288 0.77635 1.92843 1.94382 1.96307 1.34025 1.22204 0.87757 0.97974 0.95069 1.55254 1.41537 1.63896 1.26734 1.00769 0.72197 0.72536 0.73071 1.93566 1.80694 1.78504 1.44119 1.93616 1.59985 1.85921 1.56099 1.35427 1.11861 1.26059 1.26769 1.19283 0.97190 0.92278 0.93223 1.25841 0.87577 1.14535 0.95693 1.86640 1.63476 1.51040 1.33984 0.93582 0.77405 0.79738 0.77194 1.20454 0.93253 0.99958 1.06015 1.26682 1.01284 1.00434 1.00101 1.84031 0.99485 1.06844 1.60846 1.23829 0.97241 0.93352 1.04690 0.91795 0.89431 0.91868 0.91254 0.88277 0.91054 0.91944 0.89382 0.92059 0.74534 0.91778 0.91095 0.88803 0.84270 0.89094 0.86562 0.73349 0.88507 0.75027 1.21932 1.19557 0.79439 0.76797 0.85689 0.90615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.69 8.37 71.98 0.60 -0.09 16 2 C 0.13 0.49 1.13 -10.79 -0.01 0.47 16 3 C -0.14 0.20 8.85 71.98 0.64 0.83 16 4 C -0.18 -0.82 8.37 71.98 0.60 -0.22 16 5 O -0.37 -2.34 9.94 -55.46 -0.55 -2.89 16 6 C 0.64 4.97 8.06 129.79 1.05 6.01 16 7 O -0.60 -8.07 11.88 19.80 0.24 -7.84 16 8 N -0.70 -0.49 5.56 -590.84 -3.29 -3.78 16 9 C 0.15 -0.14 5.28 86.38 0.46 0.31 16 10 C -0.12 0.91 3.94 -10.27 -0.04 0.87 16 11 H 0.12 -1.40 8.14 -2.39 -0.02 -1.42 16 12 C -0.13 1.23 7.13 31.12 0.22 1.45 16 13 C 0.08 -0.37 1.72 -10.27 -0.02 -0.39 16 14 F -0.20 -0.20 14.86 44.97 0.67 0.47 16 15 C 0.10 -0.43 5.66 86.38 0.49 0.06 16 16 N -1.11 -0.35 5.77 -187.49 -1.08 -1.44 16 17 S 2.73 20.04 5.08 -56.49 -0.29 19.76 16 18 O -0.98 -11.73 16.95 -128.00 -2.17 -13.90 16 19 O -0.97 -13.90 17.44 -125.70 -2.19 -16.09 16 20 C -0.80 -2.62 6.46 66.72 0.43 -2.19 16 21 C 0.00 0.00 5.13 -20.92 -0.11 -0.11 16 22 C -0.13 -0.51 2.33 71.23 0.17 -0.34 16 23 O -0.54 -3.10 12.30 -148.12 -1.82 -4.92 16 24 Si 0.82 -1.94 30.25 68.60 2.07 0.14 16 25 C -0.17 0.86 8.74 21.22 0.19 1.05 16 26 C -0.15 1.08 11.23 66.72 0.75 1.83 16 27 S 0.22 -0.80 21.09 -56.49 -1.19 -1.99 16 28 C -0.15 0.95 7.07 31.12 0.22 1.17 16 29 H 0.06 0.18 8.14 -2.39 -0.02 0.16 16 30 H 0.09 0.03 8.14 -2.39 -0.02 0.01 16 31 H 0.06 0.59 5.88 -2.39 -0.01 0.57 16 32 H 0.07 -0.10 8.14 -2.39 -0.02 -0.12 16 33 H 0.10 -0.47 8.14 -2.39 -0.02 -0.49 16 34 H 0.07 -0.14 8.14 -2.39 -0.02 -0.16 16 35 H 0.06 0.63 5.88 -2.39 -0.01 0.62 16 36 H 0.09 0.08 8.14 -2.39 -0.02 0.06 16 37 H 0.06 0.25 8.14 -2.39 -0.02 0.23 16 38 H 0.42 -1.80 8.58 -92.71 -0.80 -2.60 16 39 H 0.06 0.23 6.32 -2.39 -0.02 0.21 16 40 H 0.07 0.02 8.14 -2.39 -0.02 0.00 16 41 H 0.09 -0.84 8.10 -2.38 -0.02 -0.86 16 42 H 0.14 -2.02 8.10 -2.38 -0.02 -2.04 16 43 H 0.09 -0.68 6.25 -2.39 -0.01 -0.70 16 44 H 0.12 -0.78 7.55 -2.39 -0.02 -0.80 16 45 H 0.43 -0.28 8.19 -96.74 -0.79 -1.07 16 46 H 0.10 0.80 7.24 -2.39 -0.02 0.79 16 47 H 0.40 -1.70 8.70 -74.06 -0.64 -2.34 16 48 H -0.29 -1.46 7.11 99.48 0.71 -0.75 16 49 H -0.27 -0.19 7.11 99.48 0.71 0.52 16 50 H 0.19 -2.24 5.73 -2.91 -0.02 -2.26 16 51 H 0.22 -3.14 8.06 -2.91 -0.02 -3.16 16 52 H 0.12 -1.13 7.96 -2.39 -0.02 -1.15 16 53 H 0.08 -0.25 8.10 -2.39 -0.02 -0.26 16 Total: 0.00 -33.60 448.71 -5.18 -38.78 By element: Atomic # 1 Polarization: -15.81 SS G_CDS: -1.20 Total: -17.01 kcal Atomic # 6 Polarization: 5.10 SS G_CDS: 5.63 Total: 10.73 kcal Atomic # 7 Polarization: -0.85 SS G_CDS: -4.37 Total: -5.21 kcal Atomic # 8 Polarization: -39.15 SS G_CDS: -6.50 Total: -45.65 kcal Atomic # 9 Polarization: -0.20 SS G_CDS: 0.67 Total: 0.47 kcal Atomic # 14 Polarization: -1.94 SS G_CDS: 2.07 Total: 0.14 kcal Atomic # 16 Polarization: 19.24 SS G_CDS: -1.48 Total: 17.76 kcal Total: -33.60 -5.18 -38.78 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_16498496_13652106.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.520 kcal (2) G-P(sol) polarization free energy of solvation -33.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds