Wall clock time and date at job start Fri Mar 5 2021 22:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47511 * 2 1 4 4 C 1.53008 * 109.47131 * 239.99774 * 2 1 3 5 5 O 1.45206 * 109.47038 * 120.00114 * 2 1 3 6 6 C 1.34638 * 117.00113 * 59.99541 * 5 2 1 7 7 O 1.21517 * 119.99718 * 0.02562 * 6 5 2 8 8 N 1.34769 * 119.99969 * 180.02562 * 6 5 2 9 9 C 1.46498 * 119.99849 * 180.02562 * 8 6 5 10 10 C 1.53009 * 109.47297 * 179.97438 * 9 8 6 11 11 H 1.09002 * 112.84682 * 45.32209 * 10 9 8 12 12 C 1.53777 * 113.61569 * 176.52550 * 10 9 8 13 13 C 1.53784 * 87.07995 * 139.97944 * 12 10 9 14 14 F 1.39898 * 113.61615 * 220.01803 * 13 12 10 15 15 C 1.52999 * 113.61437 * 89.19857 * 13 12 10 16 16 N 1.46501 * 109.47035 * 180.02562 * 15 13 12 17 17 S 1.65606 * 119.99931 * 162.47282 * 16 15 13 18 18 O 1.42095 * 106.39947 * 181.89097 * 17 16 15 19 19 O 1.42102 * 106.39732 * 314.81112 * 17 16 15 20 20 C 1.76198 * 107.21866 * 68.35036 * 17 16 15 21 21 C 1.33388 * 122.53923 * 166.00040 * 20 17 16 22 22 C 1.50701 * 125.20073 * 0.02562 * 21 20 17 23 23 O 1.42903 * 109.46858 * 39.23896 * 22 21 20 24 24 Si 1.86300 * 109.46873 * 159.23123 * 22 21 20 25 25 S 1.75882 * 109.59239 * 179.90768 * 21 20 17 26 26 C 1.75879 * 90.97274 * 0.29933 * 25 21 20 27 27 C 1.33392 * 109.59409 * 359.83014 * 26 25 21 28 28 C 1.53781 * 113.61144 * 274.13269 * 10 9 8 29 29 H 1.08997 * 109.47274 * 300.00464 * 1 2 3 30 30 H 1.09003 * 109.46586 * 59.99916 * 1 2 3 31 31 H 1.08999 * 109.47390 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47303 * 180.02562 * 3 2 1 33 33 H 1.09003 * 109.47264 * 299.99668 * 3 2 1 34 34 H 1.08997 * 109.47231 * 59.99509 * 3 2 1 35 35 H 1.09004 * 109.46885 * 300.00670 * 4 2 1 36 36 H 1.09002 * 109.46888 * 60.00157 * 4 2 1 37 37 H 1.09002 * 109.47026 * 180.02562 * 4 2 1 38 38 H 0.97001 * 120.00320 * 359.97438 * 8 6 5 39 39 H 1.09007 * 109.47214 * 299.99378 * 9 8 6 40 40 H 1.08992 * 109.47781 * 59.99588 * 9 8 6 41 41 H 1.09003 * 113.61368 * 254.52534 * 12 10 9 42 42 H 1.08999 * 113.61346 * 25.34708 * 12 10 9 43 43 H 1.08997 * 109.47276 * 299.99858 * 15 13 12 44 44 H 1.08997 * 109.46823 * 60.00184 * 15 13 12 45 45 H 0.97004 * 119.99991 * 342.47182 * 16 15 13 46 46 H 1.08993 * 109.47410 * 279.23344 * 22 21 20 47 47 H 0.96698 * 114.00109 * 66.04869 * 23 22 21 48 48 H 1.48510 * 109.99799 * 58.68432 * 24 22 21 49 49 H 1.48500 * 110.00072 * 180.02562 * 24 22 21 50 50 H 1.08001 * 125.20551 * 179.79503 * 26 25 21 51 51 H 1.07999 * 122.53933 * 179.97438 * 27 26 25 52 52 H 1.08996 * 113.61532 * 334.56977 * 28 10 9 53 53 H 1.09008 * 113.61126 * 105.46667 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 8 2.0140 -0.6845 1.1856 6 6 1.6522 -1.9723 1.3384 7 8 0.9515 -2.5097 0.5036 8 7 2.0671 -2.6654 2.4172 9 6 1.6738 -4.0668 2.5832 10 6 2.2738 -4.6149 3.8796 11 1 2.1555 -3.9333 4.7220 12 6 1.8502 -6.0598 4.1919 13 6 3.2966 -6.3002 4.6557 14 9 3.8077 -7.5454 4.2745 15 6 3.5243 -5.9927 6.1371 16 7 4.9251 -6.2510 6.4797 17 16 5.5701 -5.6121 7.8647 18 8 6.9366 -6.0014 7.8876 19 8 5.1472 -4.2565 7.9160 20 6 4.7981 -6.4260 9.2234 21 6 5.2715 -6.3504 10.4681 22 6 6.4985 -5.5815 10.8857 23 8 6.5522 -4.3453 10.1706 24 14 6.4232 -5.2377 12.7151 25 16 4.2429 -7.2826 11.5481 26 6 3.2019 -7.7434 10.2074 27 6 3.6575 -7.1970 9.0790 28 6 3.7061 -5.1506 3.7172 29 1 -0.3634 0.5139 0.8899 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1300 1.4424 -0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6767 1.9563 0.8899 35 1 1.6766 -1.7490 -1.2493 36 1 1.6767 -0.2075 -2.1393 37 1 3.1301 -0.7217 -1.2490 38 1 2.6267 -2.2366 3.0834 39 1 0.5869 -4.1364 2.6276 40 1 2.0409 -4.6497 1.7385 41 1 1.1161 -6.1359 4.9941 42 1 1.5725 -6.6341 3.3081 43 1 3.2904 -4.9460 6.3311 44 1 2.8785 -6.6278 6.7434 45 1 5.4747 -6.7964 5.8953 46 1 7.3890 -6.1691 10.6627 47 1 5.8382 -3.7318 10.3917 48 1 6.3349 -6.5144 13.4686 49 1 7.6274 -4.4793 13.1394 50 1 2.3279 -8.3729 10.2856 51 1 3.1735 -7.3454 8.1250 52 1 3.9382 -5.4762 2.7032 53 1 4.4682 -4.4936 4.1367 There are 76 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 76 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_40_16498496_14772022.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 5 2021 22:55:41 Heat of formation + Delta-G solvation = -168.986505 kcal Electronic energy + Delta-G solvation = -39531.805914 eV Core-core repulsion = 34153.749473 eV Total energy + Delta-G solvation = -5378.056441 eV No. of doubly occupied orbitals = 76 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 437.127 amu Computer time = 1.94 seconds Orbital eigenvalues (eV) -48.64808 -41.80967 -40.22724 -39.68506 -38.36995 -38.20328 -37.78138 -36.85878 -36.24363 -35.46792 -34.65826 -31.83885 -29.72186 -28.36734 -28.30090 -27.59254 -27.17245 -26.75831 -24.54755 -23.65284 -22.68160 -21.73110 -21.20498 -20.51180 -20.06681 -19.38007 -19.16053 -18.51443 -17.98989 -17.90840 -17.55685 -17.38578 -17.26384 -16.79565 -16.66315 -16.49572 -16.32600 -16.06316 -15.61706 -15.59382 -15.48081 -15.39605 -15.15674 -14.97498 -14.60913 -14.43864 -14.32197 -14.12882 -14.02562 -13.88285 -13.54297 -13.37901 -13.34066 -13.20620 -13.12814 -13.09079 -13.02744 -12.90241 -12.86489 -12.77934 -12.63322 -12.52520 -12.36427 -12.17341 -12.15363 -12.01602 -11.61966 -11.50003 -11.39076 -11.24909 -11.11578 -11.06771 -10.64466 -10.20329 -10.17430 -9.77611 -5.18302 -0.76670 -0.52354 0.32558 0.64153 1.02971 1.14666 1.18223 1.48052 1.76287 1.80667 1.91582 2.66613 3.03921 3.12119 3.16224 3.21561 3.28756 3.29367 3.48011 3.56346 3.67481 3.74611 3.79737 3.94633 3.97115 4.03785 4.08755 4.16341 4.28889 4.32819 4.41067 4.53909 4.55688 4.61197 4.67809 4.68394 4.70957 4.76471 4.76560 4.81994 4.84154 4.87087 4.87707 4.88318 4.99424 5.04093 5.11566 5.13891 5.23932 5.27010 5.34216 5.41403 5.60166 5.83956 6.39645 6.40897 7.34436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.127 3.873 3 C -0.138 4.138 4 C -0.180 4.180 5 O -0.370 6.370 6 C 0.641 3.359 7 O -0.596 6.596 8 N -0.700 5.700 9 C 0.150 3.850 10 C -0.113 4.113 11 H 0.130 0.870 12 C -0.131 4.131 13 C 0.082 3.918 14 F -0.208 7.208 15 C 0.101 3.899 16 N -1.114 6.114 17 S 2.735 3.265 18 O -0.988 6.988 19 O -0.961 6.961 20 C -0.670 4.670 21 C -0.119 4.119 22 C -0.091 4.091 23 O -0.551 6.551 24 Si 0.759 3.241 25 S 0.173 5.827 26 C -0.203 4.203 27 C -0.103 4.103 28 C -0.158 4.158 29 H 0.063 0.937 30 H 0.086 0.914 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.098 0.902 34 H 0.070 0.930 35 H 0.063 0.937 36 H 0.086 0.914 37 H 0.060 0.940 38 H 0.417 0.583 39 H 0.076 0.924 40 H 0.064 0.936 41 H 0.114 0.886 42 H 0.104 0.896 43 H 0.119 0.881 44 H 0.106 0.894 45 H 0.426 0.574 46 H 0.130 0.870 47 H 0.404 0.596 48 H -0.245 1.245 49 H -0.261 1.261 50 H 0.204 0.796 51 H 0.177 0.823 52 H 0.094 0.906 53 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.548 0.434 3.946 7.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.091 3.909 3 C -0.195 4.195 4 C -0.237 4.237 5 O -0.285 6.285 6 C 0.394 3.606 7 O -0.487 6.487 8 N -0.360 5.360 9 C 0.028 3.972 10 C -0.132 4.132 11 H 0.148 0.852 12 C -0.170 4.170 13 C 0.062 3.938 14 F -0.189 7.189 15 C -0.025 4.025 16 N -0.877 5.877 17 S 2.822 3.178 18 O -0.978 6.978 19 O -0.951 6.951 20 C -0.770 4.770 21 C -0.240 4.240 22 C -0.201 4.201 23 O -0.361 6.361 24 Si 0.658 3.342 25 S 0.436 5.564 26 C -0.339 4.339 27 C -0.130 4.130 28 C -0.196 4.196 29 H 0.082 0.918 30 H 0.105 0.895 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.116 0.884 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.105 0.895 37 H 0.079 0.921 38 H 0.254 0.746 39 H 0.094 0.906 40 H 0.083 0.917 41 H 0.133 0.867 42 H 0.122 0.878 43 H 0.137 0.863 44 H 0.124 0.876 45 H 0.263 0.737 46 H 0.147 0.853 47 H 0.256 0.744 48 H -0.170 1.170 49 H -0.186 1.186 50 H 0.221 0.779 51 H 0.193 0.807 52 H 0.113 0.887 53 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -5.506 0.236 5.740 7.958 hybrid contribution 0.563 -0.988 -1.978 2.282 sum -4.943 -0.753 3.763 6.258 Atomic orbital electron populations 1.22467 0.93920 1.03727 1.03533 1.22346 0.94546 0.92542 0.81504 1.21890 1.02400 0.90960 1.04261 1.22477 1.01563 1.02268 0.97423 1.86314 1.71557 1.23415 1.47213 1.18379 0.78812 0.80779 0.82581 1.90910 1.42396 1.71031 1.44363 1.44735 1.55261 1.12867 1.23142 1.21361 1.00323 0.78131 0.97405 1.22686 0.95137 0.97331 0.97996 0.85231 1.23598 0.94502 0.94796 1.04065 1.22619 0.97112 0.79862 0.94189 1.92845 1.88774 1.45053 1.92212 1.22102 0.81362 1.05038 0.93978 1.55347 1.21568 1.70512 1.40287 1.00675 0.71941 0.73165 0.71992 1.93542 1.33475 1.84077 1.86747 1.93531 1.82978 1.32119 1.86434 1.29831 1.12178 1.19592 1.15436 1.25107 1.00682 1.01673 0.96499 1.25406 0.95428 0.86607 1.12670 1.86528 1.55641 1.26410 1.67493 0.93795 0.87436 0.83740 0.69269 1.84473 1.17876 1.43478 1.10527 1.26302 1.05584 1.07058 0.94918 1.20135 0.94217 0.97081 1.01552 1.23870 0.98318 0.96763 1.00611 0.91834 0.89539 0.91718 0.91303 0.88351 0.91107 0.91767 0.89496 0.92073 0.74571 0.90611 0.91723 0.86710 0.87766 0.86259 0.87619 0.73729 0.85290 0.74442 1.16994 1.18573 0.77916 0.80661 0.88722 0.89361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.54 8.37 71.98 0.60 0.07 16 2 C 0.13 0.39 1.13 -10.79 -0.01 0.37 16 3 C -0.14 0.25 8.85 71.98 0.64 0.89 16 4 C -0.18 -0.63 8.37 71.98 0.60 -0.03 16 5 O -0.37 -2.00 9.94 -55.47 -0.55 -2.55 16 6 C 0.64 3.91 8.06 129.79 1.05 4.95 16 7 O -0.60 -6.85 11.88 19.79 0.24 -6.62 16 8 N -0.70 0.80 5.56 -590.85 -3.28 -2.48 16 9 C 0.15 -0.62 5.50 86.38 0.47 -0.15 16 10 C -0.11 1.05 3.40 -10.27 -0.03 1.01 16 11 H 0.13 -1.64 7.66 -2.39 -0.02 -1.65 16 12 C -0.13 1.32 7.13 31.12 0.22 1.54 16 13 C 0.08 -0.53 1.91 -10.21 -0.02 -0.54 16 14 F -0.21 0.11 16.65 44.97 0.75 0.86 16 15 C 0.10 -0.77 5.29 86.38 0.46 -0.31 16 16 N -1.11 2.77 5.68 -187.50 -1.06 1.71 16 17 S 2.74 11.29 4.23 -56.49 -0.24 11.05 16 18 O -0.99 -12.48 17.13 -123.48 -2.11 -14.60 16 19 O -0.96 -6.32 16.12 -120.46 -1.94 -8.26 16 20 C -0.67 -0.84 5.71 21.22 0.12 -0.72 16 21 C -0.12 -0.18 5.77 24.59 0.14 -0.03 16 22 C -0.09 -0.22 2.40 71.24 0.17 -0.05 16 23 O -0.55 -2.41 9.71 -125.48 -1.22 -3.63 16 24 Si 0.76 -1.97 31.09 68.60 2.13 0.17 16 25 S 0.17 -0.50 20.86 -56.49 -1.18 -1.67 16 26 C -0.20 1.11 11.23 66.72 0.75 1.86 16 27 C -0.10 0.40 9.52 21.22 0.20 0.60 16 28 C -0.16 0.98 7.10 31.18 0.22 1.20 16 29 H 0.06 0.14 8.14 -2.39 -0.02 0.12 16 30 H 0.09 -0.03 8.14 -2.39 -0.02 -0.05 16 31 H 0.06 0.52 5.88 -2.39 -0.01 0.51 16 32 H 0.07 -0.12 8.14 -2.39 -0.02 -0.14 16 33 H 0.10 -0.50 8.14 -2.39 -0.02 -0.52 16 34 H 0.07 -0.15 8.14 -2.39 -0.02 -0.17 16 35 H 0.06 0.56 5.88 -2.38 -0.01 0.54 16 36 H 0.09 0.00 8.14 -2.39 -0.02 -0.02 16 37 H 0.06 0.19 8.14 -2.39 -0.02 0.17 16 38 H 0.42 -2.22 8.58 -92.71 -0.80 -3.02 16 39 H 0.08 -0.25 8.14 -2.38 -0.02 -0.27 16 40 H 0.06 -0.10 7.87 -2.39 -0.02 -0.12 16 41 H 0.11 -1.64 8.10 -2.39 -0.02 -1.66 16 42 H 0.10 -0.93 8.10 -2.39 -0.02 -0.95 16 43 H 0.12 -1.18 6.83 -2.39 -0.02 -1.20 16 44 H 0.11 -1.34 5.41 -2.39 -0.01 -1.35 16 45 H 0.43 -1.16 8.19 -96.74 -0.79 -1.96 16 46 H 0.13 0.59 7.96 -2.39 -0.02 0.57 16 47 H 0.40 -1.42 8.48 -74.06 -0.63 -2.04 16 48 H -0.24 0.15 7.11 99.48 0.71 0.86 16 49 H -0.26 -0.78 7.11 99.48 0.71 -0.07 16 50 H 0.20 -2.34 8.06 -2.91 -0.02 -2.36 16 51 H 0.18 -1.70 4.84 -2.91 -0.01 -1.72 16 52 H 0.09 -0.42 7.92 -2.39 -0.02 -0.43 16 53 H 0.09 -0.52 8.10 -2.38 -0.02 -0.54 16 Total: 0.00 -28.77 445.80 -4.08 -32.85 By element: Atomic # 1 Polarization: -16.30 SS G_CDS: -1.19 Total: -17.48 kcal Atomic # 6 Polarization: 5.08 SS G_CDS: 5.58 Total: 10.66 kcal Atomic # 7 Polarization: 3.57 SS G_CDS: -4.35 Total: -0.78 kcal Atomic # 8 Polarization: -30.07 SS G_CDS: -5.59 Total: -35.66 kcal Atomic # 9 Polarization: 0.11 SS G_CDS: 0.75 Total: 0.86 kcal Atomic # 14 Polarization: -1.97 SS G_CDS: 2.13 Total: 0.17 kcal Atomic # 16 Polarization: 10.80 SS G_CDS: -1.42 Total: 9.38 kcal Total: -28.77 -4.08 -32.85 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_16498496_14772022.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.141 kcal (2) G-P(sol) polarization free energy of solvation -28.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.94 seconds