Wall clock time and date at job start Fri Mar 5 2021 22:56:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47107 * 2 1 4 4 C 1.52997 * 109.47021 * 240.00277 * 2 1 3 5 5 O 1.45200 * 109.47302 * 120.00550 * 2 1 3 6 6 C 1.34638 * 117.00060 * 59.99309 * 5 2 1 7 7 O 1.21511 * 119.99899 * 0.02562 * 6 5 2 8 8 N 1.34780 * 119.99775 * 180.02562 * 6 5 2 9 9 C 1.46496 * 119.99785 * 180.02562 * 8 6 5 10 10 C 1.53005 * 109.47292 * 179.97438 * 9 8 6 11 11 H 1.08998 * 112.84930 * 316.19697 * 10 9 8 12 12 C 1.53783 * 113.68783 * 87.46028 * 10 9 8 13 13 C 1.53778 * 87.07768 * 139.99430 * 12 10 9 14 14 F 1.39903 * 113.69269 * 89.12947 * 13 12 10 15 15 C 1.52998 * 113.61594 * 220.02073 * 13 12 10 16 16 N 1.46504 * 109.47058 * 277.49589 * 15 13 12 17 17 S 1.65604 * 120.00004 * 164.99569 * 16 15 13 18 18 O 1.42093 * 106.40375 * 311.46687 * 17 16 15 19 19 O 1.42100 * 106.39875 * 178.54475 * 17 16 15 20 20 C 1.76199 * 107.21438 * 65.00663 * 17 16 15 21 21 C 1.33385 * 125.20519 * 150.00183 * 20 17 16 22 22 C 1.50707 * 122.53743 * 0.02562 * 21 20 17 23 23 O 1.42903 * 109.46442 * 74.73856 * 22 21 20 24 24 Si 1.86293 * 109.47256 * 194.73423 * 22 21 20 25 25 C 1.38420 * 114.92653 * 179.75554 * 21 20 17 26 26 C 1.33393 * 114.91624 * 0.24343 * 25 21 20 27 27 S 1.75883 * 109.59684 * 0.02562 * 26 25 21 28 28 C 1.53775 * 113.61675 * 184.99980 * 10 9 8 29 29 H 1.09000 * 109.47303 * 299.99360 * 1 2 3 30 30 H 1.08994 * 109.47535 * 60.00190 * 1 2 3 31 31 H 1.09005 * 109.47162 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47026 * 179.97438 * 3 2 1 33 33 H 1.08993 * 109.47278 * 300.00191 * 3 2 1 34 34 H 1.09004 * 109.46920 * 60.00442 * 3 2 1 35 35 H 1.09003 * 109.47536 * 300.00051 * 4 2 1 36 36 H 1.09000 * 109.47488 * 60.00138 * 4 2 1 37 37 H 1.09001 * 109.47193 * 179.97438 * 4 2 1 38 38 H 0.96994 * 120.00191 * 0.02562 * 8 6 5 39 39 H 1.08999 * 109.47270 * 60.00160 * 9 8 6 40 40 H 1.08999 * 109.47416 * 299.99963 * 9 8 6 41 41 H 1.09007 * 113.61219 * 25.45122 * 12 10 9 42 42 H 1.09001 * 113.61764 * 254.54384 * 12 10 9 43 43 H 1.08996 * 109.47191 * 157.50220 * 15 13 12 44 44 H 1.08994 * 109.47221 * 37.50055 * 15 13 12 45 45 H 0.97000 * 120.00133 * 345.00522 * 16 15 13 46 46 H 1.08999 * 109.47345 * 314.73927 * 22 21 20 47 47 H 0.96700 * 114.00311 * 60.00230 * 23 22 21 48 48 H 1.48506 * 109.99973 * 180.02562 * 24 22 21 49 49 H 1.48493 * 110.00375 * 301.32185 * 24 22 21 50 50 H 1.08001 * 122.54522 * 180.22441 * 25 21 20 51 51 H 1.07998 * 125.19830 * 179.97438 * 26 25 21 52 52 H 1.08996 * 113.61279 * 105.38833 * 28 10 9 53 53 H 1.08999 * 113.61428 * 334.48503 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0140 -0.6846 1.1855 6 6 1.6522 -1.9724 1.3382 7 8 0.9515 -2.5097 0.5035 8 7 2.0672 -2.6656 2.4170 9 6 1.6740 -4.0670 2.5829 10 6 2.2741 -4.6151 3.8793 11 1 3.3148 -4.3234 4.0204 12 6 1.3939 -4.3753 5.1173 13 6 1.7846 -5.7914 5.5720 14 9 2.9483 -5.8318 6.3475 15 6 0.6282 -6.5761 6.1948 16 7 0.4832 -6.1972 7.6026 17 16 -0.8963 -6.5932 8.4288 18 8 -1.9847 -6.1974 7.6055 19 8 -0.7165 -6.1241 9.7580 20 6 -0.9595 -8.3514 8.5258 21 6 -1.5233 -9.0472 9.5144 22 6 -2.1895 -8.3860 10.6935 23 8 -3.4528 -7.8537 10.2899 24 14 -2.4481 -9.6417 12.0452 25 6 -1.4553 -10.4224 9.3723 26 6 -0.8318 -10.8434 8.2709 27 16 -0.2853 -9.4575 7.3360 28 6 2.0217 -6.1175 4.0880 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 3.1300 1.4424 0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6767 1.9563 0.8901 35 1 1.6766 -1.7489 -1.2494 36 1 1.6767 -0.2073 -2.1392 37 1 3.1300 -0.7208 -1.2495 38 1 2.6263 -2.2366 3.0835 39 1 2.0411 -4.6498 1.7382 40 1 0.5871 -4.1366 2.6274 41 1 0.3341 -4.2680 4.8855 42 1 1.7667 -3.5879 5.7724 43 1 0.8348 -7.6440 6.1255 44 1 -0.2943 -6.3491 5.6605 45 1 1.1952 -5.7144 8.0507 46 1 -1.5566 -7.5793 11.0632 47 1 -4.0685 -8.5170 9.9492 48 1 -3.1050 -9.0023 13.2135 49 1 -3.2833 -10.7626 11.5442 50 1 -1.8750 -11.1029 10.0984 51 1 -0.6843 -11.8773 7.9957 52 1 2.9013 -6.7366 3.9121 53 1 1.1337 -6.4865 3.5748 There are 76 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 76 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_40_16498594_13652106.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 5 2021 22:56:13 Heat of formation + Delta-G solvation = -170.831877 kcal Electronic energy + Delta-G solvation = -39066.300344 eV Core-core repulsion = 33688.163882 eV Total energy + Delta-G solvation = -5378.136462 eV No. of doubly occupied orbitals = 76 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 437.127 amu Computer time = 1.90 seconds Orbital eigenvalues (eV) -48.80898 -41.81663 -40.14942 -39.97635 -38.48027 -38.26864 -37.32935 -37.11351 -36.45173 -35.54393 -34.68360 -31.47640 -29.94500 -28.37819 -28.31509 -28.08845 -27.30626 -26.86657 -24.35450 -23.52272 -22.44638 -21.78508 -21.23899 -20.60854 -20.03404 -19.75865 -19.18623 -18.77093 -18.20648 -17.80430 -17.69589 -17.33236 -17.02322 -16.71761 -16.60335 -16.49273 -16.33946 -16.18709 -15.95250 -15.70954 -15.46053 -15.38332 -15.28688 -15.11980 -14.66147 -14.45859 -14.23538 -14.04194 -13.95753 -13.74769 -13.67534 -13.54478 -13.43108 -13.36015 -13.34004 -13.30545 -13.11958 -12.92537 -12.87709 -12.83616 -12.57437 -12.52919 -12.36352 -12.33085 -12.13722 -12.04215 -11.58789 -11.50272 -11.40464 -11.29991 -11.12488 -10.81049 -10.71510 -10.42231 -10.21286 -9.65929 -4.99039 -0.91219 -0.67156 0.19979 0.62134 1.16853 1.17113 1.23853 1.53255 1.75055 1.78029 1.91282 2.44653 3.00463 3.09219 3.15002 3.20620 3.25767 3.41635 3.46884 3.48736 3.57503 3.73360 3.78482 3.93411 3.96607 4.03602 4.13563 4.18094 4.23622 4.32466 4.45696 4.47512 4.51021 4.60065 4.62458 4.68635 4.71355 4.74418 4.75339 4.76971 4.82780 4.86425 4.89072 4.89512 4.96184 5.01511 5.07407 5.07641 5.21679 5.25953 5.33224 5.41674 5.58669 5.76396 6.33780 6.37811 7.32831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.127 3.873 3 C -0.138 4.138 4 C -0.179 4.179 5 O -0.371 6.371 6 C 0.641 3.359 7 O -0.595 6.595 8 N -0.701 5.701 9 C 0.148 3.852 10 C -0.112 4.112 11 H 0.113 0.887 12 C -0.156 4.156 13 C 0.088 3.912 14 F -0.191 7.191 15 C 0.094 3.906 16 N -1.107 6.107 17 S 2.731 3.269 18 O -0.975 6.975 19 O -0.974 6.974 20 C -0.797 4.797 21 C 0.006 3.994 22 C -0.138 4.138 23 O -0.546 6.546 24 Si 0.800 3.200 25 C -0.177 4.177 26 C -0.147 4.147 27 S 0.227 5.773 28 C -0.133 4.133 29 H 0.060 0.940 30 H 0.086 0.914 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.098 0.902 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.086 0.914 37 H 0.062 0.938 38 H 0.416 0.584 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.110 0.890 42 H 0.087 0.913 43 H 0.091 0.909 44 H 0.112 0.888 45 H 0.432 0.568 46 H 0.131 0.869 47 H 0.391 0.609 48 H -0.298 1.298 49 H -0.253 1.253 50 H 0.177 0.823 51 H 0.213 0.787 52 H 0.102 0.898 53 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.516 -5.815 -1.959 8.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.091 3.909 3 C -0.195 4.195 4 C -0.237 4.237 5 O -0.286 6.286 6 C 0.394 3.606 7 O -0.486 6.486 8 N -0.361 5.361 9 C 0.026 3.974 10 C -0.131 4.131 11 H 0.131 0.869 12 C -0.194 4.194 13 C 0.068 3.932 14 F -0.172 7.172 15 C -0.033 4.033 16 N -0.871 5.871 17 S 2.819 3.181 18 O -0.965 6.965 19 O -0.964 6.964 20 C -1.000 5.000 21 C -0.013 4.013 22 C -0.246 4.246 23 O -0.355 6.355 24 Si 0.701 3.299 25 C -0.206 4.206 26 C -0.285 4.285 27 S 0.494 5.506 28 C -0.171 4.171 29 H 0.079 0.921 30 H 0.105 0.895 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.117 0.883 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.105 0.895 37 H 0.081 0.919 38 H 0.253 0.747 39 H 0.092 0.908 40 H 0.091 0.909 41 H 0.129 0.871 42 H 0.106 0.894 43 H 0.108 0.892 44 H 0.130 0.870 45 H 0.269 0.731 46 H 0.149 0.851 47 H 0.240 0.760 48 H -0.225 1.225 49 H -0.178 1.178 50 H 0.194 0.806 51 H 0.230 0.770 52 H 0.120 0.880 53 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 4.946 -5.249 -2.900 7.773 hybrid contribution -0.934 -0.049 1.040 1.399 sum 4.011 -5.298 -1.860 6.901 Atomic orbital electron populations 1.22475 0.94097 1.03717 1.03453 1.22342 0.94416 0.92577 0.81585 1.21891 1.02468 0.90954 1.04198 1.22469 1.01643 1.02273 0.97282 1.86309 1.71554 1.23431 1.47264 1.18377 0.78822 0.80777 0.82583 1.90908 1.42283 1.71006 1.44367 1.44747 1.55329 1.12982 1.23020 1.21415 1.00066 0.78179 0.97733 1.22725 1.00937 0.96735 0.92697 0.86875 1.23879 1.02333 0.95628 0.97527 1.21956 0.81529 0.98753 0.90985 1.92867 1.50168 1.97328 1.76818 1.22188 1.00467 1.00265 0.80343 1.55216 1.38310 1.72695 1.20867 1.00618 0.72481 0.72626 0.72408 1.93578 1.52296 1.80866 1.69725 1.93532 1.85823 1.79695 1.37325 1.35414 1.23700 1.29827 1.11041 1.19161 0.93681 0.94397 0.94042 1.25967 0.86758 1.09761 1.02132 1.86669 1.25036 1.38938 1.84822 0.93639 0.87653 0.75074 0.73574 1.20505 1.05118 0.93774 1.01187 1.26681 0.99600 1.04979 0.97194 1.83820 1.52412 0.93761 1.20634 1.23627 1.05986 0.96065 0.91465 0.92060 0.89500 0.91712 0.91152 0.88337 0.91281 0.91695 0.89515 0.91908 0.74716 0.90771 0.90911 0.87143 0.89434 0.89157 0.86959 0.73058 0.85113 0.75952 1.22523 1.17775 0.80626 0.77040 0.87994 0.85521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.64 8.37 71.98 0.60 -0.04 16 2 C 0.13 0.39 1.13 -10.80 -0.01 0.38 16 3 C -0.14 0.25 8.85 71.98 0.64 0.88 16 4 C -0.18 -0.56 8.37 71.98 0.60 0.04 16 5 O -0.37 -2.03 9.94 -55.47 -0.55 -2.58 16 6 C 0.64 3.94 8.06 129.79 1.05 4.99 16 7 O -0.59 -6.78 11.88 19.80 0.24 -6.54 16 8 N -0.70 0.66 5.56 -590.84 -3.29 -2.62 16 9 C 0.15 -0.62 5.51 86.38 0.48 -0.15 16 10 C -0.11 0.92 3.73 -10.27 -0.04 0.88 16 11 H 0.11 -0.99 8.14 -2.39 -0.02 -1.01 16 12 C -0.16 1.03 7.08 31.12 0.22 1.25 16 13 C 0.09 -0.54 1.73 -10.27 -0.02 -0.56 16 14 F -0.19 0.39 16.64 44.97 0.75 1.14 16 15 C 0.09 -0.46 5.44 86.38 0.47 0.01 16 16 N -1.11 1.01 5.96 -187.49 -1.12 -0.11 16 17 S 2.73 17.92 5.57 -56.49 -0.31 17.60 16 18 O -0.97 -12.27 17.49 -128.00 -2.24 -14.51 16 19 O -0.97 -11.68 15.54 -128.00 -1.99 -13.67 16 20 C -0.80 -2.27 6.48 66.72 0.43 -1.84 16 21 C 0.01 0.01 5.13 -20.92 -0.11 -0.10 16 22 C -0.14 -0.61 2.20 71.24 0.16 -0.46 16 23 O -0.55 -4.17 12.88 -148.98 -1.92 -6.09 16 24 Si 0.80 -1.25 30.46 68.60 2.09 0.84 16 25 C -0.18 0.69 8.74 21.22 0.19 0.87 16 26 C -0.15 1.00 11.23 66.72 0.75 1.75 16 27 S 0.23 -0.95 20.66 -56.49 -1.17 -2.12 16 28 C -0.13 1.31 7.10 31.12 0.22 1.53 16 29 H 0.06 0.19 8.14 -2.39 -0.02 0.17 16 30 H 0.09 0.01 8.14 -2.39 -0.02 -0.01 16 31 H 0.06 0.56 5.88 -2.38 -0.01 0.55 16 32 H 0.07 -0.15 8.14 -2.39 -0.02 -0.17 16 33 H 0.10 -0.50 8.14 -2.39 -0.02 -0.51 16 34 H 0.07 -0.12 8.14 -2.38 -0.02 -0.14 16 35 H 0.06 0.53 5.88 -2.39 -0.01 0.52 16 36 H 0.09 -0.02 8.14 -2.39 -0.02 -0.04 16 37 H 0.06 0.15 8.14 -2.39 -0.02 0.13 16 38 H 0.42 -2.07 8.58 -92.71 -0.80 -2.86 16 39 H 0.07 -0.24 8.14 -2.39 -0.02 -0.26 16 40 H 0.07 -0.22 7.85 -2.39 -0.02 -0.23 16 41 H 0.11 -0.74 7.72 -2.38 -0.02 -0.76 16 42 H 0.09 -0.53 8.14 -2.39 -0.02 -0.55 16 43 H 0.09 -0.74 5.83 -2.39 -0.01 -0.75 16 44 H 0.11 -0.68 7.55 -2.39 -0.02 -0.70 16 45 H 0.43 -1.26 8.19 -96.74 -0.79 -2.05 16 46 H 0.13 0.99 5.81 -2.39 -0.01 0.98 16 47 H 0.39 -0.14 8.70 -74.06 -0.64 -0.79 16 48 H -0.30 -1.88 7.11 99.48 0.71 -1.18 16 49 H -0.25 0.51 6.80 99.48 0.68 1.18 16 50 H 0.18 -1.46 5.53 -2.91 -0.02 -1.48 16 51 H 0.21 -2.93 8.06 -2.91 -0.02 -2.95 16 52 H 0.10 -1.09 8.14 -2.39 -0.02 -1.11 16 53 H 0.13 -1.64 8.06 -2.39 -0.02 -1.66 16 Total: 0.00 -29.78 448.85 -5.12 -34.90 By element: Atomic # 1 Polarization: -14.46 SS G_CDS: -1.23 Total: -15.69 kcal Atomic # 6 Polarization: 3.82 SS G_CDS: 5.62 Total: 9.44 kcal Atomic # 7 Polarization: 1.67 SS G_CDS: -4.40 Total: -2.73 kcal Atomic # 8 Polarization: -36.92 SS G_CDS: -6.46 Total: -43.39 kcal Atomic # 9 Polarization: 0.39 SS G_CDS: 0.75 Total: 1.14 kcal Atomic # 14 Polarization: -1.25 SS G_CDS: 2.09 Total: 0.84 kcal Atomic # 16 Polarization: 16.96 SS G_CDS: -1.48 Total: 15.48 kcal Total: -29.78 -5.12 -34.90 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_16498594_13652106.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.930 kcal (2) G-P(sol) polarization free energy of solvation -29.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.91 seconds