Wall clock time and date at job start Fri Mar 5 2021 22:56:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47007 * 2 1 4 4 C 1.53005 * 109.47147 * 239.99940 * 2 1 3 5 5 O 1.45200 * 109.47423 * 120.00309 * 2 1 3 6 6 C 1.34632 * 116.99957 * 59.99817 * 5 2 1 7 7 O 1.21505 * 120.00320 * 359.97438 * 6 5 2 8 8 N 1.34778 * 119.99955 * 180.02562 * 6 5 2 9 9 C 1.46502 * 120.00118 * 180.02562 * 8 6 5 10 10 C 1.53000 * 109.47321 * 179.97438 * 9 8 6 11 11 H 1.09005 * 112.90437 * 43.74399 * 10 9 8 12 12 C 1.53773 * 113.61589 * 174.99871 * 10 9 8 13 13 C 1.53785 * 87.08396 * 139.98055 * 12 10 9 14 14 F 1.39903 * 113.61398 * 89.19726 * 13 12 10 15 15 C 1.52995 * 113.61690 * 220.02277 * 13 12 10 16 16 N 1.46501 * 109.47319 * 183.47167 * 15 13 12 17 17 S 1.65596 * 120.00211 * 162.46650 * 16 15 13 18 18 O 1.42105 * 106.40142 * 314.76311 * 17 16 15 19 19 O 1.42102 * 106.40051 * 181.84782 * 17 16 15 20 20 C 1.76195 * 107.22173 * 68.30270 * 17 16 15 21 21 C 1.33392 * 122.54090 * 166.09080 * 20 17 16 22 22 C 1.50703 * 125.20080 * 0.06069 * 21 20 17 23 23 O 1.42899 * 109.46976 * 38.80423 * 22 21 20 24 24 Si 1.86299 * 109.46727 * 158.80538 * 22 21 20 25 25 S 1.75887 * 109.59352 * 180.02562 * 21 20 17 26 26 C 1.75884 * 90.97158 * 0.02562 * 25 21 20 27 27 C 1.33398 * 109.59296 * 359.97438 * 26 25 21 28 28 C 1.53787 * 87.16974 * 334.61019 * 13 12 10 29 29 H 1.09007 * 109.46926 * 299.99882 * 1 2 3 30 30 H 1.08999 * 109.47524 * 60.00129 * 1 2 3 31 31 H 1.09004 * 109.47464 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46847 * 180.02562 * 3 2 1 33 33 H 1.08995 * 109.47175 * 299.99864 * 3 2 1 34 34 H 1.08997 * 109.47190 * 60.00141 * 3 2 1 35 35 H 1.08998 * 109.47311 * 300.00610 * 4 2 1 36 36 H 1.09007 * 109.46748 * 59.99867 * 4 2 1 37 37 H 1.08992 * 109.47364 * 179.97438 * 4 2 1 38 38 H 0.97002 * 120.00162 * 359.97438 * 8 6 5 39 39 H 1.09000 * 109.46987 * 59.99539 * 9 8 6 40 40 H 1.09001 * 109.47127 * 299.99761 * 9 8 6 41 41 H 1.09001 * 113.61401 * 25.43152 * 12 10 9 42 42 H 1.08996 * 113.61547 * 254.53069 * 12 10 9 43 43 H 1.08993 * 109.47516 * 63.46150 * 15 13 12 44 44 H 1.09010 * 109.46979 * 303.46909 * 15 13 12 45 45 H 0.97001 * 119.99287 * 342.45804 * 16 15 13 46 46 H 1.08997 * 109.46946 * 278.80516 * 22 21 20 47 47 H 0.96699 * 114.00263 * 65.34730 * 23 22 21 48 48 H 1.48500 * 109.99731 * 180.02562 * 24 22 21 49 49 H 1.48498 * 110.00024 * 301.31748 * 24 22 21 50 50 H 1.07998 * 125.20329 * 180.26518 * 26 25 21 51 51 H 1.07997 * 122.53693 * 180.02562 * 27 26 25 52 52 H 1.08995 * 113.61202 * 139.93647 * 28 13 12 53 53 H 1.08999 * 113.61401 * 270.84260 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 8 2.0140 -0.6845 1.1855 6 6 1.6523 -1.9723 1.3382 7 8 0.9509 -2.5094 0.5040 8 7 2.0673 -2.6655 2.4170 9 6 1.6742 -4.0670 2.5830 10 6 2.2742 -4.6150 3.8793 11 1 2.1807 -3.9226 4.7160 12 6 1.8214 -6.0466 4.2108 13 6 3.2664 -6.3149 4.6634 14 9 3.4940 -6.0246 6.0129 15 6 3.7906 -7.6932 4.2556 16 7 5.1368 -7.8847 4.8008 17 16 5.7807 -9.4070 4.9012 18 8 4.7601 -10.2400 5.4340 19 8 7.0596 -9.2628 5.5036 20 6 6.0665 -9.9622 3.2536 21 6 6.8210 -11.0266 2.9758 22 6 7.5189 -11.8872 3.9973 23 8 6.6740 -12.0527 5.1378 24 14 7.8923 -13.5541 3.2539 25 16 6.8760 -11.2726 1.2351 26 6 5.8412 -9.8743 0.9747 27 6 5.5258 -9.3264 2.1493 28 6 3.6937 -5.1865 3.7100 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6766 -1.7489 -1.2493 36 1 1.6766 -0.2074 -2.1393 37 1 3.1299 -0.7209 -1.2495 38 1 2.6270 -2.2366 3.0832 39 1 2.0413 -4.6498 1.7382 40 1 0.5873 -4.1366 2.6274 41 1 1.5237 -6.6241 3.3355 42 1 1.0935 -6.0979 5.0205 43 1 3.8257 -7.7615 3.1683 44 1 3.1271 -8.4646 4.6467 45 1 5.6510 -7.1196 5.1028 46 1 8.4496 -11.4080 4.3011 47 1 5.8621 -12.5462 4.9576 48 1 8.5801 -14.4125 4.2515 49 1 6.6343 -14.2041 2.8066 50 1 5.5080 -9.5171 0.0115 51 1 4.8961 -8.4528 2.2324 52 1 4.4752 -4.5443 4.1161 53 1 3.9089 -5.5283 2.6976 There are 76 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 76 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_40_16498594_14772022.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 5 2021 22:56:18 Heat of formation + Delta-G solvation = -167.821474 kcal Electronic energy + Delta-G solvation = -39409.034908 eV Core-core repulsion = 34031.028986 eV Total energy + Delta-G solvation = -5378.005921 eV No. of doubly occupied orbitals = 76 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 437.127 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -48.75675 -41.79660 -39.97095 -39.72433 -38.36607 -38.21802 -37.88214 -36.90578 -36.32490 -35.49448 -34.65552 -31.85052 -29.88357 -28.36182 -28.30105 -27.59457 -27.22555 -26.84869 -24.56356 -23.47465 -22.34611 -21.72630 -21.25366 -20.63480 -20.26342 -19.45454 -19.16372 -18.59998 -18.03882 -17.68818 -17.63568 -17.35360 -17.28817 -16.83807 -16.65226 -16.59194 -16.31413 -16.07230 -15.72733 -15.57898 -15.48394 -15.43716 -15.17135 -14.89024 -14.61543 -14.42749 -14.22542 -14.16138 -13.98969 -13.85983 -13.61662 -13.44085 -13.33910 -13.28309 -13.24763 -13.14542 -13.10236 -12.90878 -12.86269 -12.79946 -12.52780 -12.51204 -12.33704 -12.31761 -12.12380 -12.01209 -11.63310 -11.39074 -11.33016 -11.29976 -11.23903 -11.07143 -10.66164 -10.18813 -10.12203 -9.72683 -5.21539 -0.78732 -0.51103 0.36271 0.66212 1.00976 1.16207 1.19102 1.47560 1.77319 1.77828 1.91226 2.64604 3.00260 3.05945 3.15707 3.22646 3.26299 3.28480 3.43242 3.59333 3.62725 3.74854 3.80072 3.93063 3.94951 4.05812 4.14908 4.23002 4.28563 4.32500 4.39940 4.53009 4.61603 4.61694 4.65995 4.70251 4.73339 4.76916 4.77841 4.81250 4.84631 4.87874 4.88778 4.92355 5.00621 5.04357 5.09275 5.15461 5.23583 5.27482 5.35139 5.43843 5.60543 5.87774 6.10459 6.39878 7.34910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.127 3.873 3 C -0.139 4.139 4 C -0.179 4.179 5 O -0.371 6.371 6 C 0.642 3.358 7 O -0.594 6.594 8 N -0.701 5.701 9 C 0.150 3.850 10 C -0.115 4.115 11 H 0.104 0.896 12 C -0.137 4.137 13 C 0.078 3.922 14 F -0.201 7.201 15 C 0.093 3.907 16 N -1.111 6.111 17 S 2.730 3.270 18 O -0.979 6.979 19 O -0.985 6.985 20 C -0.673 4.673 21 C -0.124 4.124 22 C -0.100 4.100 23 O -0.546 6.546 24 Si 0.766 3.234 25 S 0.195 5.805 26 C -0.204 4.204 27 C -0.104 4.104 28 C -0.146 4.146 29 H 0.060 0.940 30 H 0.086 0.914 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.097 0.903 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.085 0.915 37 H 0.062 0.938 38 H 0.416 0.584 39 H 0.081 0.919 40 H 0.068 0.932 41 H 0.132 0.868 42 H 0.087 0.913 43 H 0.121 0.879 44 H 0.091 0.909 45 H 0.428 0.572 46 H 0.147 0.853 47 H 0.394 0.606 48 H -0.264 1.264 49 H -0.256 1.256 50 H 0.206 0.794 51 H 0.179 0.821 52 H 0.087 0.913 53 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.282 2.792 -8.155 8.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.091 3.909 3 C -0.196 4.196 4 C -0.236 4.236 5 O -0.286 6.286 6 C 0.395 3.605 7 O -0.485 6.485 8 N -0.361 5.361 9 C 0.028 3.972 10 C -0.133 4.133 11 H 0.122 0.878 12 C -0.176 4.176 13 C 0.058 3.942 14 F -0.182 7.182 15 C -0.032 4.032 16 N -0.874 5.874 17 S 2.818 3.182 18 O -0.969 6.969 19 O -0.975 6.975 20 C -0.775 4.775 21 C -0.245 4.245 22 C -0.209 4.209 23 O -0.355 6.355 24 Si 0.663 3.337 25 S 0.459 5.541 26 C -0.340 4.340 27 C -0.131 4.131 28 C -0.183 4.183 29 H 0.079 0.921 30 H 0.105 0.895 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.116 0.884 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.104 0.896 37 H 0.081 0.919 38 H 0.252 0.748 39 H 0.100 0.900 40 H 0.087 0.913 41 H 0.150 0.850 42 H 0.106 0.894 43 H 0.139 0.861 44 H 0.110 0.890 45 H 0.264 0.736 46 H 0.165 0.835 47 H 0.245 0.755 48 H -0.189 1.189 49 H -0.181 1.181 50 H 0.223 0.777 51 H 0.195 0.805 52 H 0.106 0.894 53 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 1.018 0.405 -8.543 8.613 hybrid contribution -1.238 1.660 1.735 2.702 sum -0.219 2.065 -6.808 7.117 Atomic orbital electron populations 1.22476 0.94121 1.03732 1.03414 1.22334 0.94388 0.92540 0.81633 1.21893 1.02466 0.91048 1.04154 1.22465 1.01652 1.02307 0.97189 1.86310 1.71563 1.23493 1.47240 1.18363 0.78802 0.80741 0.82598 1.90906 1.42214 1.71005 1.44408 1.44760 1.55250 1.12999 1.23072 1.21402 1.00047 0.78222 0.97493 1.22729 0.96284 0.97023 0.97309 0.87762 1.23647 0.94266 0.95618 1.04085 1.22168 0.99471 0.94925 0.77599 1.92859 1.95621 1.94479 1.35238 1.22287 0.82182 0.97675 1.01105 1.55227 1.25693 1.26366 1.80093 1.00706 0.72350 0.71988 0.73158 1.93522 1.59710 1.66864 1.76794 1.93536 1.42605 1.85938 1.75397 1.29716 1.14463 1.08305 1.25037 1.25087 0.99997 0.98291 1.01128 1.25476 0.96444 1.11004 0.87955 1.86641 1.37182 1.77840 1.33885 0.94254 0.83195 0.71671 0.84530 1.84130 1.46157 1.27871 0.95898 1.26364 1.03683 1.00138 1.03776 1.20105 1.01720 1.01969 0.89315 1.23911 0.97483 0.95966 1.00943 0.92111 0.89550 0.91647 0.91162 0.88398 0.91329 0.91560 0.89614 0.91876 0.74772 0.90032 0.91349 0.85016 0.89415 0.86125 0.89041 0.73552 0.83524 0.75453 1.18865 1.18059 0.77709 0.80462 0.89383 0.85486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.37 8.37 71.98 0.60 0.23 16 2 C 0.13 0.20 1.13 -10.79 -0.01 0.18 16 3 C -0.14 0.42 8.85 71.98 0.64 1.05 16 4 C -0.18 -0.24 8.37 71.98 0.60 0.36 16 5 O -0.37 -1.40 9.94 -55.41 -0.55 -1.95 16 6 C 0.64 2.64 8.06 129.79 1.05 3.68 16 7 O -0.59 -5.48 11.88 19.83 0.24 -5.24 16 8 N -0.70 2.09 5.56 -590.86 -3.29 -1.20 16 9 C 0.15 -0.96 5.51 86.38 0.48 -0.49 16 10 C -0.11 1.07 3.73 -10.21 -0.04 1.03 16 11 H 0.10 -0.87 8.14 -2.38 -0.02 -0.88 16 12 C -0.14 1.30 7.10 31.12 0.22 1.52 16 13 C 0.08 -0.49 1.68 -10.27 -0.02 -0.51 16 14 F -0.20 -0.27 16.90 44.97 0.76 0.49 16 15 C 0.09 -0.58 5.45 86.38 0.47 -0.10 16 16 N -1.11 1.50 5.52 -187.49 -1.04 0.46 16 17 S 2.73 17.40 4.22 -56.49 -0.24 17.16 16 18 O -0.98 -11.44 16.07 -120.41 -1.94 -13.38 16 19 O -0.98 -13.42 17.12 -123.31 -2.11 -15.54 16 20 C -0.67 -1.29 5.71 21.22 0.12 -1.17 16 21 C -0.12 -0.21 5.77 24.59 0.14 -0.07 16 22 C -0.10 -0.30 2.41 71.24 0.17 -0.12 16 23 O -0.55 -4.33 9.68 -125.18 -1.21 -5.54 16 24 Si 0.77 -1.38 31.11 68.60 2.13 0.75 16 25 S 0.20 -0.83 20.88 -56.49 -1.18 -2.01 16 26 C -0.20 1.30 11.23 66.72 0.75 2.05 16 27 C -0.10 0.46 9.52 21.22 0.20 0.66 16 28 C -0.15 1.51 7.09 31.18 0.22 1.73 16 29 H 0.06 0.10 8.14 -2.38 -0.02 0.08 16 30 H 0.09 -0.11 8.14 -2.39 -0.02 -0.13 16 31 H 0.06 0.46 5.88 -2.38 -0.01 0.44 16 32 H 0.07 -0.23 8.14 -2.39 -0.02 -0.25 16 33 H 0.10 -0.60 8.14 -2.39 -0.02 -0.62 16 34 H 0.07 -0.20 8.14 -2.39 -0.02 -0.22 16 35 H 0.07 0.41 5.88 -2.39 -0.01 0.39 16 36 H 0.09 -0.15 8.14 -2.38 -0.02 -0.17 16 37 H 0.06 0.04 8.14 -2.39 -0.02 0.02 16 38 H 0.42 -2.76 8.58 -92.71 -0.80 -3.55 16 39 H 0.08 -0.58 7.85 -2.39 -0.02 -0.60 16 40 H 0.07 -0.29 8.14 -2.39 -0.02 -0.31 16 41 H 0.13 -1.84 8.06 -2.39 -0.02 -1.86 16 42 H 0.09 -0.68 8.14 -2.39 -0.02 -0.70 16 43 H 0.12 -1.65 5.13 -2.39 -0.01 -1.67 16 44 H 0.09 -0.40 7.62 -2.38 -0.02 -0.41 16 45 H 0.43 -1.37 8.56 -96.74 -0.83 -2.19 16 46 H 0.15 0.34 7.96 -2.39 -0.02 0.32 16 47 H 0.39 1.11 8.44 -74.06 -0.63 0.48 16 48 H -0.26 -0.99 7.11 99.48 0.71 -0.29 16 49 H -0.26 -0.18 7.11 99.48 0.71 0.53 16 50 H 0.21 -2.61 8.06 -2.91 -0.02 -2.63 16 51 H 0.18 -1.98 4.83 -2.91 -0.01 -2.00 16 52 H 0.09 -0.84 8.14 -2.39 -0.02 -0.86 16 53 H 0.13 -1.83 7.68 -2.39 -0.02 -1.85 16 Total: 0.00 -30.81 447.19 -4.04 -34.85 By element: Atomic # 1 Polarization: -17.69 SS G_CDS: -1.22 Total: -18.91 kcal Atomic # 6 Polarization: 4.46 SS G_CDS: 5.60 Total: 10.05 kcal Atomic # 7 Polarization: 3.58 SS G_CDS: -4.32 Total: -0.74 kcal Atomic # 8 Polarization: -36.07 SS G_CDS: -5.57 Total: -41.65 kcal Atomic # 9 Polarization: -0.27 SS G_CDS: 0.76 Total: 0.49 kcal Atomic # 14 Polarization: -1.38 SS G_CDS: 2.13 Total: 0.75 kcal Atomic # 16 Polarization: 16.57 SS G_CDS: -1.42 Total: 15.15 kcal Total: -30.81 -4.04 -34.85 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_16498594_14772022.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.974 kcal (2) G-P(sol) polarization free energy of solvation -30.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds