Wall clock time and date at job start Fri Mar 5 2021 22:56:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47183 * 2 1 4 4 C 1.53005 * 109.46978 * 240.00192 * 2 1 3 5 5 O 1.45202 * 109.47128 * 120.00345 * 2 1 3 6 6 C 1.34631 * 116.99796 * 59.99843 * 5 2 1 7 7 O 1.21509 * 120.00411 * 0.02562 * 6 5 2 8 8 N 1.34782 * 119.99896 * 180.02562 * 6 5 2 9 9 C 1.46495 * 120.00102 * 180.02562 * 8 6 5 10 10 C 1.53004 * 109.47288 * 179.97438 * 9 8 6 11 11 H 1.09002 * 112.84705 * 43.79893 * 10 9 8 12 12 C 1.53772 * 113.61489 * 174.99857 * 10 9 8 13 13 C 1.53778 * 87.08103 * 139.98234 * 12 10 9 14 14 F 1.39902 * 113.61831 * 89.20085 * 13 12 10 15 15 C 1.53003 * 113.61535 * 220.01755 * 13 12 10 16 16 N 1.46496 * 109.46986 * 184.99813 * 15 13 12 17 17 S 1.65608 * 119.99853 * 165.00309 * 16 15 13 18 18 O 1.42104 * 106.39844 * 311.45907 * 17 16 15 19 19 O 1.42103 * 106.40157 * 178.54090 * 17 16 15 20 20 C 1.76201 * 107.21846 * 64.99774 * 17 16 15 21 21 C 1.33386 * 122.53614 * 90.02441 * 20 17 16 22 22 S 1.75891 * 109.59176 * 179.74952 * 21 20 17 23 23 C 1.75886 * 90.96733 * 0.23276 * 22 21 20 24 24 C 1.50705 * 125.20294 * 180.02562 * 23 22 21 25 25 O 1.42901 * 109.46878 * 244.97512 * 24 23 22 26 26 Si 1.86308 * 109.46750 * 4.96920 * 24 23 22 27 27 C 1.33384 * 109.59693 * 359.97438 * 23 22 21 28 28 C 1.53778 * 113.61373 * 272.49858 * 10 9 8 29 29 H 1.09000 * 109.46998 * 300.00117 * 1 2 3 30 30 H 1.09005 * 109.46955 * 59.99330 * 1 2 3 31 31 H 1.08999 * 109.47358 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47025 * 179.97438 * 3 2 1 33 33 H 1.08992 * 109.47540 * 300.00459 * 3 2 1 34 34 H 1.09006 * 109.46708 * 60.00439 * 3 2 1 35 35 H 1.08999 * 109.46894 * 300.00061 * 4 2 1 36 36 H 1.09000 * 109.46466 * 60.00249 * 4 2 1 37 37 H 1.08996 * 109.46598 * 179.97438 * 4 2 1 38 38 H 0.96997 * 119.99854 * 359.97438 * 8 6 5 39 39 H 1.08998 * 109.47438 * 59.99656 * 9 8 6 40 40 H 1.09005 * 109.47201 * 299.99797 * 9 8 6 41 41 H 1.09000 * 113.61802 * 25.43267 * 12 10 9 42 42 H 1.09002 * 113.69351 * 254.53707 * 12 10 9 43 43 H 1.08999 * 109.47039 * 64.99708 * 15 13 12 44 44 H 1.09000 * 109.47157 * 304.99544 * 15 13 12 45 45 H 0.96997 * 120.00344 * 344.99649 * 16 15 13 46 46 H 1.08002 * 125.20849 * 0.02562 * 21 20 17 47 47 H 1.08992 * 109.47225 * 124.96845 * 24 23 22 48 48 H 0.96699 * 114.00434 * 59.99788 * 25 24 23 49 49 H 1.48504 * 109.99753 * 180.02562 * 26 24 23 50 50 H 1.48494 * 110.00132 * 301.32240 * 26 24 23 51 51 H 1.07997 * 122.54195 * 179.97438 * 27 23 22 52 52 H 1.09000 * 113.61599 * 105.46644 * 28 10 9 53 53 H 1.08999 * 113.61470 * 334.56625 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0140 -0.6846 1.1855 6 6 1.6522 -1.9723 1.3382 7 8 0.9516 -2.5097 0.5034 8 7 2.0672 -2.6655 2.4170 9 6 1.6740 -4.0670 2.5829 10 6 2.2740 -4.6150 3.8793 11 1 2.1791 -3.9224 4.7156 12 6 1.8211 -6.0467 4.2107 13 6 3.2660 -6.3149 4.6634 14 9 3.4936 -6.0247 6.0130 15 6 3.7902 -7.6933 4.2557 16 7 5.1214 -7.8994 4.8313 17 16 5.7781 -9.4190 4.8759 18 8 4.7758 -10.2737 5.4092 19 8 7.0695 -9.2813 5.4526 20 6 6.0297 -9.9277 3.2077 21 6 7.1642 -9.6887 2.5482 22 16 7.0501 -10.3462 0.9208 23 6 5.4172 -10.9194 1.2348 24 6 4.5502 -11.6566 0.2469 25 8 3.4103 -10.8575 -0.0756 26 14 5.5270 -11.9987 -1.3022 27 6 5.0639 -10.6029 2.4815 28 6 3.6912 -5.1870 3.7086 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5140 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9564 -0.8898 34 1 1.6767 1.9563 0.8901 35 1 1.6766 -1.7489 -1.2493 36 1 1.6766 -0.2073 -2.1392 37 1 3.1299 -0.7208 -1.2495 38 1 2.6268 -2.2367 3.0832 39 1 2.0412 -4.6498 1.7382 40 1 0.5871 -4.1366 2.6273 41 1 1.5234 -6.6241 3.3355 42 1 1.0930 -6.0994 5.0202 43 1 3.8511 -7.7520 3.1690 44 1 3.1121 -8.4633 4.6237 45 1 5.6184 -7.1457 5.1862 46 1 8.0234 -9.1745 2.9531 47 1 4.2213 -12.5991 0.6845 48 1 3.6284 -10.0020 -0.4701 49 1 4.6830 -12.7249 -2.2849 50 1 6.0084 -10.7234 -1.8912 51 1 4.0986 -10.8566 2.8939 52 1 4.4732 -4.5442 4.1129 53 1 3.9049 -5.5293 2.6960 There are 76 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 76 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_40_16498594_15065232.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 5 2021 22:56:24 Heat of formation + Delta-G solvation = -174.617962 kcal Electronic energy + Delta-G solvation = -39072.275762 eV Core-core repulsion = 33693.975123 eV Total energy + Delta-G solvation = -5378.300639 eV No. of doubly occupied orbitals = 76 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 437.127 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -48.75564 -41.82437 -39.96805 -39.50945 -38.45391 -38.26786 -37.64880 -37.05809 -36.32639 -35.50635 -34.67580 -31.83772 -29.88878 -28.38744 -28.32283 -27.27786 -27.13596 -26.85470 -24.95040 -23.49401 -22.35215 -21.47175 -21.25442 -20.60079 -20.18400 -19.24324 -19.18106 -18.68292 -17.98002 -17.83553 -17.70692 -17.39252 -17.33928 -16.78221 -16.62976 -16.38573 -16.34371 -16.10275 -15.72929 -15.55119 -15.46295 -15.30658 -15.02503 -14.83937 -14.64831 -14.45633 -14.23337 -14.12135 -13.94001 -13.84607 -13.70135 -13.48199 -13.37530 -13.36118 -13.30614 -13.23242 -13.12580 -12.95739 -12.93434 -12.88569 -12.54462 -12.51789 -12.36172 -12.32848 -12.13686 -12.03522 -11.58264 -11.41456 -11.32732 -11.28556 -11.09400 -10.81349 -10.63013 -10.22930 -10.22042 -9.82626 -5.07516 -0.83336 -0.47220 0.34418 0.59800 0.97711 1.16134 1.18142 1.48664 1.74433 1.85458 2.00901 2.64668 3.04044 3.13402 3.17619 3.23178 3.30628 3.35360 3.51350 3.58969 3.61932 3.72509 3.77638 3.91982 3.92563 4.05828 4.19322 4.24522 4.33147 4.41687 4.49614 4.50606 4.59214 4.59569 4.62809 4.68573 4.70017 4.74477 4.74853 4.79202 4.82253 4.85566 4.89369 4.90678 4.99358 5.03294 5.05467 5.06892 5.21256 5.24994 5.32746 5.42218 5.57944 5.91245 6.37266 6.40293 7.32232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.128 3.872 3 C -0.139 4.139 4 C -0.180 4.180 5 O -0.371 6.371 6 C 0.642 3.358 7 O -0.595 6.595 8 N -0.700 5.700 9 C 0.150 3.850 10 C -0.115 4.115 11 H 0.106 0.894 12 C -0.138 4.138 13 C 0.081 3.919 14 F -0.199 7.199 15 C 0.101 3.899 16 N -1.105 6.105 17 S 2.728 3.272 18 O -0.983 6.983 19 O -0.983 6.983 20 C -0.691 4.691 21 C -0.084 4.084 22 S 0.187 5.813 23 C -0.229 4.229 24 C -0.038 4.038 25 O -0.536 6.536 26 Si 0.712 3.288 27 C -0.055 4.055 28 C -0.144 4.144 29 H 0.061 0.939 30 H 0.086 0.914 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.098 0.902 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.085 0.915 37 H 0.062 0.938 38 H 0.416 0.584 39 H 0.077 0.923 40 H 0.068 0.932 41 H 0.126 0.874 42 H 0.088 0.912 43 H 0.114 0.886 44 H 0.090 0.910 45 H 0.428 0.572 46 H 0.202 0.798 47 H 0.136 0.864 48 H 0.389 0.611 49 H -0.275 1.275 50 H -0.254 1.254 51 H 0.157 0.843 52 H 0.089 0.911 53 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.546 3.259 -4.179 5.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.092 3.908 3 C -0.196 4.196 4 C -0.237 4.237 5 O -0.286 6.286 6 C 0.395 3.605 7 O -0.486 6.486 8 N -0.360 5.360 9 C 0.028 3.972 10 C -0.133 4.133 11 H 0.125 0.875 12 C -0.177 4.177 13 C 0.061 3.939 14 F -0.179 7.179 15 C -0.026 4.026 16 N -0.868 5.868 17 S 2.817 3.183 18 O -0.973 6.973 19 O -0.974 6.974 20 C -0.793 4.793 21 C -0.223 4.223 22 S 0.451 5.549 23 C -0.347 4.347 24 C -0.150 4.150 25 O -0.345 6.345 26 Si 0.614 3.386 27 C -0.084 4.084 28 C -0.181 4.181 29 H 0.080 0.920 30 H 0.105 0.895 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.116 0.884 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.104 0.896 37 H 0.081 0.919 38 H 0.253 0.747 39 H 0.096 0.904 40 H 0.086 0.914 41 H 0.145 0.855 42 H 0.107 0.893 43 H 0.132 0.868 44 H 0.109 0.891 45 H 0.265 0.735 46 H 0.219 0.781 47 H 0.154 0.846 48 H 0.239 0.761 49 H -0.201 1.201 50 H -0.179 1.179 51 H 0.174 0.826 52 H 0.107 0.893 53 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 3.014 1.983 -5.818 6.846 hybrid contribution -1.203 1.487 1.189 2.253 sum 1.811 3.470 -4.629 6.063 Atomic orbital electron populations 1.22479 0.94117 1.03717 1.03464 1.22333 0.94393 0.92551 0.81571 1.21895 1.02474 0.90988 1.04200 1.22472 1.01654 1.02292 0.97270 1.86309 1.71559 1.23455 1.47256 1.18369 0.78797 0.80755 0.82595 1.90910 1.42268 1.71006 1.44378 1.44749 1.55261 1.12944 1.23096 1.21389 1.00022 0.78231 0.97511 1.22710 0.96352 0.97057 0.97229 0.87539 1.23630 0.94554 0.95558 1.03959 1.22093 0.99186 0.95009 0.77564 1.92859 1.95577 1.94492 1.35013 1.22056 0.82700 0.97206 1.00597 1.55134 1.27204 1.27276 1.77168 1.00729 0.72151 0.72351 0.73115 1.93566 1.60631 1.66118 1.76966 1.93575 1.41194 1.86188 1.76398 1.29746 1.02776 1.19679 1.27060 1.26226 1.00255 0.98351 0.97479 1.84433 1.10082 1.49926 1.10495 1.25084 0.99550 1.09827 1.00212 1.24531 0.90531 0.96151 1.03755 1.86627 1.30765 1.34120 1.82940 0.94410 0.84538 0.83540 0.76100 1.19690 0.99731 0.96661 0.92335 1.23832 0.97456 0.96096 1.00738 0.92030 0.89528 0.91704 0.91146 0.88375 0.91259 0.91643 0.89582 0.91880 0.74715 0.90442 0.91402 0.85530 0.89313 0.86807 0.89129 0.73474 0.78056 0.84644 0.76149 1.20065 1.17949 0.82598 0.89281 0.86138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.45 8.37 71.98 0.60 0.16 16 2 C 0.13 0.25 1.13 -10.79 -0.01 0.24 16 3 C -0.14 0.39 8.85 71.98 0.64 1.02 16 4 C -0.18 -0.35 8.37 71.98 0.60 0.25 16 5 O -0.37 -1.56 9.94 -55.41 -0.55 -2.11 16 6 C 0.64 3.04 8.06 129.79 1.05 4.09 16 7 O -0.59 -5.96 11.88 19.81 0.24 -5.73 16 8 N -0.70 1.64 5.56 -590.85 -3.29 -1.65 16 9 C 0.15 -0.81 5.51 86.38 0.48 -0.34 16 10 C -0.11 1.01 3.73 -10.27 -0.04 0.97 16 11 H 0.11 -0.87 8.14 -2.39 -0.02 -0.89 16 12 C -0.14 1.22 7.10 31.12 0.22 1.44 16 13 C 0.08 -0.53 1.70 -10.27 -0.02 -0.55 16 14 F -0.20 -0.02 16.80 44.97 0.76 0.73 16 15 C 0.10 -0.68 5.97 86.38 0.52 -0.16 16 16 N -1.11 4.42 5.81 -187.49 -1.09 3.34 16 17 S 2.73 4.92 5.80 -56.49 -0.33 4.59 16 18 O -0.98 -8.56 17.11 -128.00 -2.19 -10.75 16 19 O -0.98 -7.36 17.64 -128.00 -2.26 -9.61 16 20 C -0.69 1.01 5.86 21.22 0.12 1.14 16 21 C -0.08 0.33 10.70 66.72 0.71 1.05 16 22 S 0.19 -0.95 20.60 -56.49 -1.16 -2.11 16 23 C -0.23 0.72 5.70 24.59 0.14 0.86 16 24 C -0.04 0.14 2.96 71.24 0.21 0.35 16 25 O -0.54 1.01 12.88 -148.98 -1.92 -0.91 16 26 Si 0.71 -2.98 30.98 68.60 2.13 -0.85 16 27 C -0.06 0.08 9.59 21.22 0.20 0.28 16 28 C -0.14 1.42 7.08 31.12 0.22 1.64 16 29 H 0.06 0.12 8.14 -2.39 -0.02 0.10 16 30 H 0.09 -0.07 8.14 -2.38 -0.02 -0.09 16 31 H 0.06 0.49 5.88 -2.39 -0.01 0.48 16 32 H 0.07 -0.22 8.14 -2.39 -0.02 -0.24 16 33 H 0.10 -0.58 8.14 -2.39 -0.02 -0.60 16 34 H 0.07 -0.19 8.14 -2.38 -0.02 -0.21 16 35 H 0.06 0.45 5.88 -2.39 -0.01 0.44 16 36 H 0.09 -0.11 8.14 -2.39 -0.02 -0.12 16 37 H 0.06 0.07 8.14 -2.39 -0.02 0.05 16 38 H 0.42 -2.62 8.58 -92.71 -0.80 -3.41 16 39 H 0.08 -0.42 7.84 -2.39 -0.02 -0.44 16 40 H 0.07 -0.21 8.14 -2.38 -0.02 -0.23 16 41 H 0.13 -1.56 8.06 -2.39 -0.02 -1.58 16 42 H 0.09 -0.66 8.14 -2.39 -0.02 -0.68 16 43 H 0.11 -1.38 7.84 -2.39 -0.02 -1.40 16 44 H 0.09 -0.48 7.75 -2.39 -0.02 -0.50 16 45 H 0.43 -2.58 8.46 -96.75 -0.82 -3.40 16 46 H 0.20 -1.57 8.00 -2.91 -0.02 -1.59 16 47 H 0.14 -0.66 7.96 -2.39 -0.02 -0.68 16 48 H 0.39 -3.14 8.70 -74.06 -0.64 -3.78 16 49 H -0.28 -0.80 7.11 99.48 0.71 -0.09 16 50 H -0.25 0.43 7.11 99.48 0.71 1.14 16 51 H 0.16 -0.24 7.97 -2.91 -0.02 -0.27 16 52 H 0.09 -0.86 8.14 -2.39 -0.02 -0.87 16 53 H 0.12 -1.52 7.65 -2.39 -0.02 -1.54 16 Total: 0.00 -27.77 460.03 -5.27 -33.03 By element: Atomic # 1 Polarization: -19.17 SS G_CDS: -1.25 Total: -20.42 kcal Atomic # 6 Polarization: 6.80 SS G_CDS: 5.65 Total: 12.45 kcal Atomic # 7 Polarization: 6.06 SS G_CDS: -4.37 Total: 1.69 kcal Atomic # 8 Polarization: -22.44 SS G_CDS: -6.68 Total: -29.12 kcal Atomic # 9 Polarization: -0.02 SS G_CDS: 0.76 Total: 0.73 kcal Atomic # 14 Polarization: -2.98 SS G_CDS: 2.13 Total: -0.85 kcal Atomic # 16 Polarization: 3.98 SS G_CDS: -1.49 Total: 2.48 kcal Total: -27.77 -5.27 -33.03 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_16498594_15065232.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.583 kcal (2) G-P(sol) polarization free energy of solvation -27.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds