Wall clock time and date at job start Fri Mar 5 2021 22:56:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47159 * 2 1 4 4 C 1.53000 * 109.47284 * 240.00193 * 2 1 3 5 5 O 1.45194 * 109.47039 * 120.00091 * 2 1 3 6 6 C 1.34638 * 117.00320 * 60.00284 * 5 2 1 7 7 O 1.21516 * 119.99375 * 359.97438 * 6 5 2 8 8 N 1.34774 * 120.00641 * 179.97438 * 6 5 2 9 9 C 1.46496 * 120.00099 * 179.97438 * 8 6 5 10 10 H 1.08994 * 112.91109 * 23.75176 * 9 8 6 11 11 C 1.53787 * 113.61210 * 155.00440 * 9 8 6 12 12 C 1.53779 * 87.07963 * 139.97940 * 11 9 8 13 13 F 1.39897 * 113.61427 * 89.11723 * 12 11 9 14 14 C 1.52998 * 113.61250 * 220.01477 * 12 11 9 15 15 N 1.46496 * 109.47269 * 185.00070 * 14 12 11 16 16 S 1.65607 * 120.00195 * 165.00126 * 15 14 12 17 17 O 1.42099 * 106.39909 * 178.54281 * 16 15 14 18 18 O 1.42099 * 106.40100 * 311.45840 * 16 15 14 19 19 C 1.76197 * 107.21864 * 65.00150 * 16 15 14 20 20 C 1.38245 * 119.99806 * 269.73080 * 19 16 15 21 21 C 1.38237 * 119.99419 * 179.80955 * 20 19 16 22 22 C 1.38231 * 120.00384 * 0.39228 * 21 20 19 23 23 C 1.50700 * 119.99925 * 179.83409 * 22 21 20 24 24 O 1.42896 * 109.47111 * 120.02529 * 23 22 21 25 25 Si 1.86299 * 109.47153 * 0.02562 * 23 22 21 26 26 C 1.38237 * 119.99722 * 359.86023 * 22 21 20 27 27 C 1.38232 * 120.00060 * 89.99557 * 19 16 15 28 28 C 1.53779 * 87.08402 * 334.56577 * 12 11 9 29 29 H 1.08996 * 109.47601 * 299.99573 * 1 2 3 30 30 H 1.09008 * 109.47003 * 59.99972 * 1 2 3 31 31 H 1.09001 * 109.47089 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47346 * 179.97438 * 3 2 1 33 33 H 1.09003 * 109.47568 * 300.00538 * 3 2 1 34 34 H 1.09002 * 109.46886 * 59.99891 * 3 2 1 35 35 H 1.09001 * 109.47166 * 300.00086 * 4 2 1 36 36 H 1.09008 * 109.47235 * 59.99977 * 4 2 1 37 37 H 1.09005 * 109.47250 * 179.97438 * 4 2 1 38 38 H 0.97002 * 119.99411 * 0.02562 * 8 6 5 39 39 H 1.08997 * 113.61028 * 254.52900 * 11 9 8 40 40 H 1.08998 * 113.61447 * 25.34434 * 11 9 8 41 41 H 1.09007 * 109.47269 * 305.00322 * 14 12 11 42 42 H 1.08998 * 109.47235 * 64.99931 * 14 12 11 43 43 H 0.97000 * 120.00173 * 345.00430 * 15 14 12 44 44 H 1.07991 * 119.99852 * 359.97438 * 20 19 16 45 45 H 1.08001 * 119.99584 * 180.22795 * 21 20 19 46 46 H 1.09008 * 109.46758 * 240.02432 * 23 22 21 47 47 H 0.96695 * 113.99817 * 300.00366 * 24 23 22 48 48 H 1.48499 * 109.99916 * 179.97438 * 25 23 22 49 49 H 1.48498 * 110.00092 * 301.31960 * 25 23 22 50 50 H 1.08012 * 119.99563 * 179.97438 * 26 22 21 51 51 H 1.08005 * 120.00208 * 359.97438 * 27 19 16 52 52 H 1.09002 * 113.61557 * 270.88569 * 28 12 11 53 53 H 1.09004 * 113.61501 * 139.97990 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0139 -0.6845 1.1855 6 6 1.6523 -1.9723 1.3383 7 8 0.9509 -2.5094 0.5039 8 7 2.0680 -2.6658 2.4165 9 6 1.6739 -4.0669 2.5829 10 1 1.4197 -4.5511 1.6401 11 6 2.6474 -4.8817 3.4510 12 6 1.4101 -5.5543 4.0685 13 9 0.9912 -6.6976 3.3796 14 6 1.5226 -5.7765 5.5781 15 7 0.3551 -6.5250 6.0499 16 16 0.3736 -7.2302 7.5483 17 8 -0.8978 -7.8410 7.7200 18 8 1.5982 -7.9453 7.6400 19 6 0.4659 -5.9311 8.7350 20 6 1.6977 -5.4752 9.1664 21 6 1.7700 -4.4532 10.0945 22 6 0.6108 -3.8928 10.5973 23 6 0.6897 -2.7813 11.6119 24 8 0.0478 -1.6153 11.0919 25 14 2.4763 -2.3971 11.9744 26 6 -0.6209 -4.3523 10.1698 27 6 -0.6933 -5.3715 9.2388 28 6 0.6283 -4.2855 3.6892 29 1 -0.3634 0.5137 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6766 1.9563 0.8900 35 1 1.6767 -1.7489 -1.2493 36 1 1.6767 -0.2073 -2.1393 37 1 3.1301 -0.7208 -1.2495 38 1 2.6276 -2.2369 3.0828 39 1 3.2757 -5.5644 2.8790 40 1 3.2148 -4.2755 4.1572 41 1 2.4289 -6.3418 5.7956 42 1 1.5654 -4.8125 6.0851 43 1 -0.4289 -6.6077 5.4848 44 1 2.6033 -5.9155 8.7763 45 1 2.7323 -4.0945 10.4288 46 1 0.1911 -3.0916 12.5302 47 1 0.4400 -1.2826 10.2731 48 1 2.5677 -1.3020 12.9732 49 1 3.1630 -3.6104 12.4858 50 1 -1.5267 -3.9146 10.5630 51 1 -1.6557 -5.7303 8.9046 52 1 0.6426 -3.5165 4.4617 53 1 -0.3734 -4.4870 3.3096 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_40_16499084_13421422.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 5 2021 22:56:44 Heat of formation + Delta-G solvation = -178.747137 kcal Electronic energy + Delta-G solvation = -38687.421733 eV Core-core repulsion = 33375.327412 eV Total energy + Delta-G solvation = -5312.094321 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 417.155 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -48.77635 -41.84230 -40.67287 -39.92350 -38.45031 -37.90877 -37.69248 -37.04349 -36.15301 -35.23939 -33.81772 -33.00311 -32.17717 -28.49219 -28.36261 -28.28334 -27.22130 -26.99438 -24.67155 -24.05878 -22.99012 -22.52921 -21.41638 -20.85764 -20.48252 -19.28962 -19.15036 -18.78159 -18.26100 -17.95370 -17.51382 -17.19859 -16.97663 -16.89770 -16.56128 -16.27981 -16.20261 -15.96448 -15.82337 -15.63308 -15.40324 -15.33624 -15.24468 -14.81219 -14.68158 -14.47720 -14.44422 -14.19284 -13.92530 -13.84026 -13.58334 -13.45866 -13.32429 -13.30976 -13.23373 -13.20450 -12.92949 -12.90203 -12.84802 -12.71962 -12.63628 -12.42243 -12.40750 -12.28324 -11.98743 -11.80903 -11.57813 -11.38484 -11.35724 -11.10653 -10.69471 -10.55133 -10.30046 -10.18961 -10.13422 -5.03911 -0.77167 -0.37659 0.20655 1.16063 1.24546 1.62084 1.73913 1.87847 1.96518 2.34879 2.69245 3.04094 3.10167 3.12853 3.22045 3.37029 3.42180 3.51869 3.60537 3.65966 3.75285 3.79755 3.80846 3.86745 3.95527 4.21626 4.26635 4.27373 4.36823 4.39144 4.48035 4.57940 4.60497 4.61674 4.62897 4.67239 4.72782 4.77576 4.78312 4.84777 4.86391 4.89111 4.90583 4.95927 4.97613 5.00362 5.07535 5.18744 5.26848 5.27711 5.31564 5.43618 5.60931 5.71235 5.91594 6.42158 6.72397 7.36341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.129 3.871 3 C -0.138 4.138 4 C -0.181 4.181 5 O -0.366 6.366 6 C 0.642 3.358 7 O -0.597 6.597 8 N -0.683 5.683 9 C 0.134 3.866 10 H 0.096 0.904 11 C -0.143 4.143 12 C 0.087 3.913 13 F -0.201 7.201 14 C 0.102 3.898 15 N -1.109 6.109 16 S 2.714 3.286 17 O -0.991 6.991 18 O -0.980 6.980 19 C -0.675 4.675 20 C -0.019 4.019 21 C -0.137 4.137 22 C -0.063 4.063 23 C -0.084 4.084 24 O -0.551 6.551 25 Si 0.786 3.214 26 C -0.123 4.123 27 C -0.026 4.026 28 C -0.163 4.163 29 H 0.064 0.936 30 H 0.084 0.916 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.096 0.904 34 H 0.071 0.929 35 H 0.062 0.938 36 H 0.084 0.916 37 H 0.063 0.937 38 H 0.423 0.577 39 H 0.094 0.906 40 H 0.150 0.850 41 H 0.103 0.897 42 H 0.127 0.873 43 H 0.427 0.573 44 H 0.165 0.835 45 H 0.160 0.840 46 H 0.111 0.889 47 H 0.398 0.602 48 H -0.302 1.302 49 H -0.284 1.284 50 H 0.139 0.861 51 H 0.145 0.855 52 H 0.135 0.865 53 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.514 8.655 -0.147 10.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.093 3.907 3 C -0.195 4.195 4 C -0.239 4.239 5 O -0.281 6.281 6 C 0.396 3.604 7 O -0.488 6.488 8 N -0.343 5.343 9 C 0.030 3.970 10 H 0.114 0.886 11 C -0.182 4.182 12 C 0.066 3.934 13 F -0.181 7.181 14 C -0.024 4.024 15 N -0.871 5.871 16 S 2.806 3.194 17 O -0.982 6.982 18 O -0.970 6.970 19 C -0.763 4.763 20 C -0.038 4.038 21 C -0.156 4.156 22 C -0.064 4.064 23 C -0.193 4.193 24 O -0.359 6.359 25 Si 0.692 3.308 26 C -0.142 4.142 27 C -0.046 4.046 28 C -0.202 4.202 29 H 0.083 0.917 30 H 0.103 0.897 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.114 0.886 34 H 0.090 0.910 35 H 0.081 0.919 36 H 0.103 0.897 37 H 0.082 0.918 38 H 0.262 0.738 39 H 0.113 0.887 40 H 0.168 0.832 41 H 0.121 0.879 42 H 0.144 0.856 43 H 0.263 0.737 44 H 0.183 0.817 45 H 0.177 0.823 46 H 0.128 0.872 47 H 0.248 0.752 48 H -0.230 1.230 49 H -0.211 1.211 50 H 0.157 0.843 51 H 0.162 0.838 52 H 0.153 0.847 53 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 5.544 7.511 0.755 9.366 hybrid contribution -1.219 -0.008 0.227 1.240 sum 4.325 7.503 0.982 8.716 Atomic orbital electron populations 1.22477 0.94156 1.03634 1.03519 1.22312 0.94339 0.92580 0.81495 1.21890 1.02523 0.90821 1.04246 1.22485 1.01710 1.02198 0.97465 1.86306 1.71451 1.23227 1.47082 1.18463 0.78613 0.80816 0.82523 1.90926 1.42298 1.70984 1.44582 1.44565 1.54991 1.11644 1.23071 1.22459 0.96558 0.79179 0.98842 0.88571 1.24072 0.95985 0.98741 0.99412 1.21845 0.98399 0.82332 0.90825 1.92873 1.91313 1.52849 1.81083 1.22129 0.88555 0.99548 0.92195 1.55166 1.26045 1.72174 1.33698 1.01044 0.72280 0.73381 0.72744 1.93571 1.43571 1.75010 1.86015 1.93570 1.47076 1.69768 1.86577 1.30748 1.00290 1.23322 1.21989 1.21217 0.96427 0.92754 0.93378 1.21407 0.98452 0.97623 0.98076 1.20851 0.93990 0.95930 0.95595 1.25362 1.11685 0.85108 0.97190 1.86509 1.60685 1.42075 1.46615 0.93731 0.73451 0.77723 0.85928 1.21292 0.98475 0.96719 0.97708 1.21111 0.97529 0.92624 0.93298 1.24291 0.99460 0.96707 0.99704 0.91713 0.89733 0.91876 0.91061 0.88582 0.90970 0.91904 0.89687 0.91819 0.73842 0.88740 0.83230 0.87917 0.85565 0.73678 0.81718 0.82322 0.87164 0.75175 1.23003 1.21090 0.84336 0.83754 0.84664 0.90582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.28 8.37 71.98 0.60 0.32 16 2 C 0.13 0.11 1.13 -10.79 -0.01 0.10 16 3 C -0.14 0.57 8.85 71.98 0.64 1.21 16 4 C -0.18 -0.33 8.37 71.98 0.60 0.27 16 5 O -0.37 -0.79 9.94 -55.48 -0.55 -1.34 16 6 C 0.64 2.10 8.06 129.79 1.05 3.15 16 7 O -0.60 -5.98 11.48 19.79 0.23 -5.75 16 8 N -0.68 3.41 5.36 -567.60 -3.04 0.37 16 9 C 0.13 -0.70 4.22 45.52 0.19 -0.51 16 10 H 0.10 0.14 7.47 -2.39 -0.02 0.12 16 11 C -0.14 1.58 7.29 31.12 0.23 1.80 16 12 C 0.09 -0.65 1.70 -10.27 -0.02 -0.67 16 13 F -0.20 -0.15 16.80 44.97 0.76 0.60 16 14 C 0.10 -1.03 5.98 86.38 0.52 -0.52 16 15 N -1.11 5.80 5.81 -187.49 -1.09 4.71 16 16 S 2.71 2.05 5.74 -56.49 -0.32 1.72 16 17 O -0.99 -8.38 17.28 -128.00 -2.21 -10.59 16 18 O -0.98 -5.92 16.75 -128.00 -2.14 -8.07 16 19 C -0.67 1.64 5.95 22.27 0.13 1.78 16 20 C -0.02 0.10 9.52 22.27 0.21 0.32 16 21 C -0.14 0.93 8.67 22.27 0.19 1.12 16 22 C -0.06 0.29 5.39 -19.87 -0.11 0.18 16 23 C -0.08 0.41 2.82 71.24 0.20 0.62 16 24 O -0.55 2.47 12.77 -148.98 -1.90 0.57 16 25 Si 0.79 -5.21 29.79 68.60 2.04 -3.16 16 26 C -0.12 0.30 9.61 22.27 0.21 0.52 16 27 C -0.03 0.04 9.52 22.27 0.21 0.26 16 28 C -0.16 1.32 7.32 31.12 0.23 1.54 16 29 H 0.06 0.03 8.14 -2.39 -0.02 0.01 16 30 H 0.08 -0.11 8.14 -2.38 -0.02 -0.13 16 31 H 0.06 0.45 5.88 -2.39 -0.01 0.43 16 32 H 0.07 -0.32 8.14 -2.39 -0.02 -0.34 16 33 H 0.10 -0.65 8.14 -2.39 -0.02 -0.67 16 34 H 0.07 -0.34 8.14 -2.39 -0.02 -0.36 16 35 H 0.06 0.46 5.88 -2.39 -0.01 0.45 16 36 H 0.08 -0.10 8.14 -2.38 -0.02 -0.12 16 37 H 0.06 0.06 8.14 -2.38 -0.02 0.04 16 38 H 0.42 -4.86 8.84 -92.71 -0.82 -5.68 16 39 H 0.09 -0.87 8.14 -2.39 -0.02 -0.89 16 40 H 0.15 -2.77 8.08 -2.39 -0.02 -2.79 16 41 H 0.10 -1.10 7.75 -2.38 -0.02 -1.12 16 42 H 0.13 -2.23 7.84 -2.39 -0.02 -2.25 16 43 H 0.43 -2.44 8.46 -96.74 -0.82 -3.26 16 44 H 0.17 -1.59 7.61 -2.91 -0.02 -1.61 16 45 H 0.16 -1.85 4.88 -2.91 -0.01 -1.87 16 46 H 0.11 -0.34 7.96 -2.38 -0.02 -0.36 16 47 H 0.40 -5.28 8.70 -74.06 -0.64 -5.93 16 48 H -0.30 -0.57 7.11 99.48 0.71 0.14 16 49 H -0.28 0.50 7.11 99.48 0.71 1.21 16 50 H 0.14 -0.46 8.06 -2.90 -0.02 -0.48 16 51 H 0.14 -0.37 7.62 -2.91 -0.02 -0.39 16 52 H 0.14 -1.83 7.90 -2.39 -0.02 -1.85 16 53 H 0.08 -0.32 8.14 -2.39 -0.02 -0.34 16 Total: 0.00 -33.08 444.90 -4.42 -37.51 By element: Atomic # 1 Polarization: -26.79 SS G_CDS: -1.27 Total: -28.05 kcal Atomic # 6 Polarization: 6.40 SS G_CDS: 5.08 Total: 11.48 kcal Atomic # 7 Polarization: 9.21 SS G_CDS: -4.13 Total: 5.08 kcal Atomic # 8 Polarization: -18.59 SS G_CDS: -6.58 Total: -25.18 kcal Atomic # 9 Polarization: -0.15 SS G_CDS: 0.76 Total: 0.60 kcal Atomic # 14 Polarization: -5.21 SS G_CDS: 2.04 Total: -3.16 kcal Atomic # 16 Polarization: 2.05 SS G_CDS: -0.32 Total: 1.72 kcal Total: -33.08 -4.42 -37.51 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_16499084_13421422.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.240 kcal (2) G-P(sol) polarization free energy of solvation -33.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds