Wall clock time and date at job start Fri Mar 5 2021 22:56:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47159 * 2 1 4 4 C 1.53000 * 109.47284 * 240.00193 * 2 1 3 5 5 O 1.45194 * 109.47039 * 120.00091 * 2 1 3 6 6 C 1.34638 * 117.00320 * 60.00284 * 5 2 1 7 7 O 1.21516 * 119.99375 * 359.97438 * 6 5 2 8 8 N 1.34774 * 120.00641 * 179.97438 * 6 5 2 9 9 C 1.46496 * 120.00099 * 179.97438 * 8 6 5 10 10 H 1.08994 * 112.91109 * 23.75176 * 9 8 6 11 11 C 1.53787 * 113.61210 * 155.00440 * 9 8 6 12 12 C 1.53779 * 87.07963 * 139.97940 * 11 9 8 13 13 F 1.39901 * 113.61423 * 89.20237 * 12 11 9 14 14 C 1.52998 * 113.61250 * 220.01477 * 12 11 9 15 15 N 1.46496 * 109.47269 * 185.00070 * 14 12 11 16 16 S 1.65607 * 120.00195 * 165.00126 * 15 14 12 17 17 O 1.42099 * 106.39909 * 178.54281 * 16 15 14 18 18 O 1.42099 * 106.40100 * 311.45840 * 16 15 14 19 19 C 1.76193 * 107.21667 * 64.99904 * 16 15 14 20 20 C 1.33392 * 125.20261 * 179.72010 * 19 16 15 21 21 C 1.50696 * 122.53829 * 0.02562 * 20 19 16 22 22 O 1.42905 * 109.47656 * 285.00217 * 21 20 19 23 23 Si 1.86308 * 109.47153 * 165.00145 * 21 20 19 24 24 C 1.38423 * 114.92212 * 179.86541 * 20 19 16 25 25 C 1.33396 * 114.91772 * 0.42510 * 24 20 19 26 26 S 1.75878 * 109.59603 * 359.77517 * 25 24 20 27 27 C 1.53779 * 87.08402 * 334.56577 * 12 11 9 28 28 H 1.08996 * 109.47601 * 299.99573 * 1 2 3 29 29 H 1.09008 * 109.47003 * 59.99972 * 1 2 3 30 30 H 1.09001 * 109.47089 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47346 * 179.97438 * 3 2 1 32 32 H 1.09003 * 109.47568 * 300.00538 * 3 2 1 33 33 H 1.09002 * 109.46886 * 59.99891 * 3 2 1 34 34 H 1.09001 * 109.47166 * 300.00086 * 4 2 1 35 35 H 1.09008 * 109.47235 * 59.99977 * 4 2 1 36 36 H 1.09005 * 109.47250 * 179.97438 * 4 2 1 37 37 H 0.97002 * 119.99411 * 0.02562 * 8 6 5 38 38 H 1.08997 * 113.61028 * 254.52900 * 11 9 8 39 39 H 1.08998 * 113.61447 * 25.34434 * 11 9 8 40 40 H 1.09007 * 109.47269 * 305.00322 * 14 12 11 41 41 H 1.08998 * 109.47235 * 64.99931 * 14 12 11 42 42 H 0.97000 * 120.00173 * 345.00430 * 15 14 12 43 43 H 1.09004 * 109.47175 * 44.99993 * 21 20 19 44 44 H 0.96698 * 113.99729 * 300.00588 * 22 21 20 45 45 H 1.48495 * 109.99757 * 58.68166 * 23 21 20 46 46 H 1.48501 * 109.99781 * 180.02562 * 23 21 20 47 47 H 1.07992 * 122.54272 * 180.20230 * 24 20 19 48 48 H 1.07998 * 125.19859 * 179.79400 * 25 24 20 49 49 H 1.09002 * 113.61557 * 270.88569 * 27 12 11 50 50 H 1.09004 * 113.61501 * 139.97990 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0139 -0.6845 1.1855 6 6 1.6523 -1.9723 1.3383 7 8 0.9509 -2.5094 0.5039 8 7 2.0680 -2.6658 2.4165 9 6 1.6739 -4.0669 2.5829 10 1 1.4197 -4.5511 1.6401 11 6 2.6474 -4.8817 3.4510 12 6 1.4101 -5.5543 4.0685 13 9 0.9924 -6.6987 3.3807 14 6 1.5226 -5.7765 5.5781 15 7 0.3551 -6.5250 6.0499 16 16 0.3736 -7.2302 7.5483 17 8 -0.8978 -7.8410 7.7200 18 8 1.5982 -7.9453 7.6400 19 6 0.4660 -5.9310 8.7349 20 6 0.4961 -6.0987 10.0579 21 6 0.4536 -7.4597 10.7036 22 8 -0.8749 -7.9809 10.6297 23 14 0.9660 -7.3162 12.4891 24 6 0.5727 -4.9281 10.7927 25 6 0.5959 -3.8093 10.0666 26 16 0.5249 -4.2143 8.3566 27 6 0.6283 -4.2855 3.6892 28 1 -0.3634 0.5137 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6766 1.9563 0.8900 34 1 1.6767 -1.7489 -1.2493 35 1 1.6767 -0.2073 -2.1393 36 1 3.1301 -0.7208 -1.2495 37 1 2.6276 -2.2369 3.0828 38 1 3.2757 -5.5644 2.8790 39 1 3.2148 -4.2755 4.1572 40 1 2.4289 -6.3418 5.7956 41 1 1.5654 -4.8125 6.0851 42 1 -0.4289 -6.6077 5.4848 43 1 1.1366 -8.1306 10.1824 44 1 -1.5373 -7.4338 11.0735 45 1 0.0617 -6.3795 13.2032 46 1 0.9289 -8.6519 13.1370 47 1 0.6073 -4.9209 11.8720 48 1 0.6503 -2.8080 10.4675 49 1 0.6426 -3.5165 4.4617 50 1 -0.3734 -4.4870 3.3096 There are 73 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 73 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV m_40_16499084_13652106.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 5 2021 22:56:50 Heat of formation + Delta-G solvation = -158.450181 kcal Electronic energy + Delta-G solvation = -37436.807661 eV Core-core repulsion = 32214.745728 eV Total energy + Delta-G solvation = -5222.061932 eV No. of doubly occupied orbitals = 73 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 423.111 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -48.92482 -41.83131 -40.18588 -40.10788 -38.18712 -37.91028 -37.23788 -36.82537 -36.36248 -35.24914 -33.92604 -31.57821 -28.75949 -28.36622 -28.32396 -28.10328 -27.32582 -24.79509 -24.46480 -22.69152 -21.83059 -21.45825 -20.79213 -20.01290 -19.84249 -19.17669 -18.77063 -18.43971 -17.83287 -17.57863 -17.19621 -17.12332 -16.86085 -16.60625 -16.31942 -16.22522 -16.08029 -15.87317 -15.53993 -15.46731 -15.37735 -15.32960 -14.95750 -14.57247 -14.38395 -14.25408 -14.12084 -13.87889 -13.63924 -13.46018 -13.41867 -13.35729 -13.08467 -13.05608 -13.00342 -12.96481 -12.86774 -12.85333 -12.71772 -12.65345 -12.40447 -12.30660 -12.28668 -11.80872 -11.67942 -11.62447 -11.34589 -11.02884 -10.94545 -10.77929 -10.52891 -10.31385 -9.79980 -5.07376 -0.77221 -0.75413 0.09412 0.45638 1.09265 1.09309 1.11983 1.46581 1.76712 1.81398 1.86485 2.58335 2.76867 2.80558 2.91376 3.11083 3.20673 3.32604 3.33497 3.35221 3.59920 3.73556 3.79188 3.82776 3.89199 3.93202 3.94482 4.02401 4.21509 4.22713 4.24249 4.30021 4.44650 4.51373 4.53030 4.54450 4.59484 4.64863 4.66874 4.72496 4.74634 4.82490 4.89491 4.91702 4.92825 5.04826 5.18161 5.32975 5.40585 5.53553 5.67559 6.29666 6.30865 7.34252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.137 3.863 3 C -0.142 4.142 4 C -0.185 4.185 5 O -0.364 6.364 6 C 0.651 3.349 7 O -0.563 6.563 8 N -0.701 5.701 9 C 0.145 3.855 10 H 0.129 0.871 11 C -0.160 4.160 12 C 0.094 3.906 13 F -0.175 7.175 14 C 0.107 3.893 15 N -1.116 6.116 16 S 2.718 3.282 17 O -0.925 6.925 18 O -0.942 6.942 19 C -0.766 4.766 20 C 0.009 3.991 21 C -0.106 4.106 22 O -0.508 6.508 23 Si 0.711 3.289 24 C -0.162 4.162 25 C -0.160 4.160 26 S 0.198 5.802 27 C -0.172 4.172 28 H 0.060 0.940 29 H 0.072 0.928 30 H 0.087 0.913 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.067 0.933 34 H 0.087 0.913 35 H 0.072 0.928 36 H 0.060 0.940 37 H 0.408 0.592 38 H 0.100 0.900 39 H 0.113 0.887 40 H 0.101 0.899 41 H 0.084 0.916 42 H 0.426 0.574 43 H 0.128 0.872 44 H 0.379 0.621 45 H -0.253 1.253 46 H -0.248 1.248 47 H 0.157 0.843 48 H 0.179 0.821 49 H 0.109 0.891 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.152 8.554 2.261 9.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.100 3.900 3 C -0.199 4.199 4 C -0.242 4.242 5 O -0.279 6.279 6 C 0.405 3.595 7 O -0.451 6.451 8 N -0.360 5.360 9 C 0.041 3.959 10 H 0.146 0.854 11 C -0.199 4.199 12 C 0.074 3.926 13 F -0.155 7.155 14 C -0.020 4.020 15 N -0.878 5.878 16 S 2.801 3.199 17 O -0.915 6.915 18 O -0.932 6.932 19 C -0.965 4.965 20 C -0.008 4.008 21 C -0.218 4.218 22 O -0.314 6.314 23 Si 0.609 3.391 24 C -0.192 4.192 25 C -0.298 4.298 26 S 0.464 5.536 27 C -0.211 4.211 28 H 0.079 0.921 29 H 0.091 0.909 30 H 0.106 0.894 31 H 0.086 0.914 32 H 0.101 0.899 33 H 0.086 0.914 34 H 0.106 0.894 35 H 0.091 0.909 36 H 0.079 0.921 37 H 0.243 0.757 38 H 0.119 0.881 39 H 0.131 0.869 40 H 0.120 0.880 41 H 0.102 0.898 42 H 0.263 0.737 43 H 0.146 0.854 44 H 0.227 0.773 45 H -0.178 1.178 46 H -0.172 1.172 47 H 0.174 0.826 48 H 0.197 0.803 49 H 0.127 0.873 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 3.971 7.810 1.208 8.844 hybrid contribution -1.303 0.349 1.252 1.840 sum 2.668 8.158 2.460 8.929 Atomic orbital electron populations 1.22523 0.93808 1.05065 1.02742 1.22131 0.94458 0.91560 0.81817 1.21881 1.02351 0.92314 1.03359 1.22528 1.01639 1.03455 0.96549 1.86304 1.71455 1.23352 1.46799 1.18151 0.78665 0.80700 0.82031 1.90937 1.40678 1.70378 1.43140 1.44629 1.55646 1.11795 1.23890 1.22459 0.94572 0.79430 0.99438 0.85357 1.24059 0.96763 0.99404 0.99666 1.21611 0.97736 0.83193 0.90101 1.92926 1.90974 1.51235 1.80366 1.21883 0.89490 0.97496 0.93144 1.55484 1.25348 1.72164 1.34845 1.01591 0.74471 0.72291 0.71523 1.93679 1.41373 1.71956 1.84466 1.93626 1.46537 1.67262 1.85738 1.35753 1.26756 1.18277 1.15733 1.18985 0.93420 0.97249 0.91127 1.25363 0.89309 0.92583 1.14500 1.86797 1.15221 1.50830 1.78518 0.94632 0.90120 0.82144 0.72155 1.20346 1.05938 0.90855 1.02096 1.26143 1.03372 1.03368 0.96878 1.83929 1.69353 0.94460 1.05845 1.24295 1.00887 0.96135 0.99780 0.92129 0.90894 0.89416 0.91367 0.89896 0.91409 0.89420 0.90887 0.92075 0.75661 0.88143 0.86917 0.88041 0.89769 0.73737 0.85430 0.77331 1.17801 1.17182 0.82561 0.80346 0.87298 0.88751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.11 8.37 37.16 0.31 0.20 16 2 C 0.14 0.07 1.13 -90.62 -0.10 -0.03 16 3 C -0.14 0.20 8.85 37.16 0.33 0.53 16 4 C -0.18 -0.13 8.37 37.16 0.31 0.18 16 5 O -0.36 -0.45 9.94 -40.32 -0.40 -0.85 16 6 C 0.65 0.97 8.06 54.05 0.44 1.41 16 7 O -0.56 -2.33 11.48 -19.28 -0.22 -2.55 16 8 N -0.70 1.38 5.36 -57.93 -0.31 1.07 16 9 C 0.15 -0.34 4.22 -67.12 -0.28 -0.62 16 10 H 0.13 -0.03 7.47 -51.93 -0.39 -0.41 16 11 C -0.16 0.67 7.29 -25.92 -0.19 0.48 16 12 C 0.09 -0.25 1.70 -89.81 -0.15 -0.40 16 13 F -0.17 -0.07 16.80 2.25 0.04 -0.04 16 14 C 0.11 -0.31 5.72 -4.04 -0.02 -0.33 16 15 N -1.12 1.04 5.62 -10.61 -0.06 0.98 16 16 S 2.72 6.19 5.07 -107.50 -0.54 5.65 16 17 O -0.92 -5.18 17.41 -59.76 -1.04 -6.22 16 18 O -0.94 -4.32 16.99 -57.17 -0.97 -5.29 16 19 C -0.77 -0.43 6.46 29.04 0.19 -0.24 16 20 C 0.01 0.00 5.13 -106.25 -0.55 -0.54 16 21 C -0.11 -0.11 2.33 36.00 0.08 -0.03 16 22 O -0.51 -1.37 12.27 -36.45 -0.45 -1.82 16 23 Si 0.71 -0.90 30.45 -169.99 -5.18 -6.07 16 24 C -0.16 0.28 8.74 -41.21 -0.36 -0.08 16 25 C -0.16 0.46 11.23 29.04 0.33 0.79 16 26 S 0.20 -0.49 21.09 -107.50 -2.27 -2.76 16 27 C -0.17 0.57 7.32 -25.92 -0.19 0.38 16 28 H 0.06 0.02 8.14 -51.93 -0.42 -0.41 16 29 H 0.07 -0.04 8.14 -51.92 -0.42 -0.46 16 30 H 0.09 0.24 5.88 -51.93 -0.31 -0.06 16 31 H 0.07 -0.10 8.14 -51.93 -0.42 -0.53 16 32 H 0.08 -0.21 8.14 -51.93 -0.42 -0.64 16 33 H 0.07 -0.11 8.14 -51.93 -0.42 -0.53 16 34 H 0.09 0.25 5.88 -51.93 -0.31 -0.06 16 35 H 0.07 -0.04 8.14 -51.92 -0.42 -0.46 16 36 H 0.06 0.03 8.14 -51.93 -0.42 -0.40 16 37 H 0.41 -1.83 8.84 -40.82 -0.36 -2.19 16 38 H 0.10 -0.39 8.14 -51.93 -0.42 -0.81 16 39 H 0.11 -0.76 8.08 -51.93 -0.42 -1.18 16 40 H 0.10 -0.29 7.75 -51.93 -0.40 -0.70 16 41 H 0.08 -0.45 5.95 -51.93 -0.31 -0.76 16 42 H 0.43 -0.81 8.46 -34.47 -0.29 -1.10 16 43 H 0.13 0.19 7.26 -51.93 -0.38 -0.19 16 44 H 0.38 -0.35 8.70 45.56 0.40 0.05 16 45 H -0.25 0.14 6.81 56.52 0.38 0.53 16 46 H -0.25 -0.46 7.11 56.52 0.40 -0.06 16 47 H 0.16 -0.55 5.53 -52.49 -0.29 -0.84 16 48 H 0.18 -1.00 8.06 -52.49 -0.42 -1.42 16 49 H 0.11 -0.56 7.90 -51.93 -0.41 -0.97 16 50 H 0.09 -0.22 8.14 -51.93 -0.42 -0.64 16 LS Contribution 430.36 15.07 6.49 6.49 Total: 0.00 -12.27 430.36 -11.68 -23.96 By element: Atomic # 1 Polarization: -7.32 SS G_CDS: -6.90 Total: -14.23 kcal Atomic # 6 Polarization: 1.56 SS G_CDS: 0.14 Total: 1.70 kcal Atomic # 7 Polarization: 2.42 SS G_CDS: -0.37 Total: 2.05 kcal Atomic # 8 Polarization: -13.65 SS G_CDS: -3.08 Total: -16.73 kcal Atomic # 9 Polarization: -0.07 SS G_CDS: 0.04 Total: -0.04 kcal Atomic # 14 Polarization: -0.90 SS G_CDS: -5.18 Total: -6.07 kcal Atomic # 16 Polarization: 5.70 SS G_CDS: -2.81 Total: 2.89 kcal Total LS contribution 6.49 Total: 6.49 kcal Total: -12.27 -11.68 -23.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_16499084_13652106.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.494 kcal (2) G-P(sol) polarization free energy of solvation -12.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds