Wall clock time and date at job start Fri Mar 5 2021 22:56:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47159 * 2 1 4 4 C 1.53000 * 109.47284 * 240.00193 * 2 1 3 5 5 O 1.45194 * 109.47039 * 120.00091 * 2 1 3 6 6 C 1.34638 * 117.00320 * 60.00284 * 5 2 1 7 7 O 1.21516 * 119.99375 * 359.97438 * 6 5 2 8 8 N 1.34774 * 120.00641 * 179.97438 * 6 5 2 9 9 C 1.46496 * 120.00099 * 179.97438 * 8 6 5 10 10 H 1.08994 * 112.91109 * 23.75176 * 9 8 6 11 11 C 1.53787 * 113.61210 * 155.00440 * 9 8 6 12 12 C 1.53779 * 87.07963 * 139.97940 * 11 9 8 13 13 F 1.39901 * 113.61423 * 89.20237 * 12 11 9 14 14 C 1.52998 * 113.61250 * 220.01477 * 12 11 9 15 15 N 1.46496 * 109.47269 * 185.00070 * 14 12 11 16 16 S 1.65607 * 120.00195 * 165.00126 * 15 14 12 17 17 O 1.42099 * 106.39909 * 178.54281 * 16 15 14 18 18 O 1.42099 * 106.40100 * 311.45840 * 16 15 14 19 19 C 1.76193 * 107.21667 * 64.99904 * 16 15 14 20 20 C 1.33392 * 125.20261 * 179.72010 * 19 16 15 21 21 C 1.50696 * 122.53829 * 0.02562 * 20 19 16 22 22 O 1.42905 * 109.47656 * 285.00217 * 21 20 19 23 23 Si 1.86308 * 109.47153 * 165.00145 * 21 20 19 24 24 C 1.38423 * 114.92212 * 179.86541 * 20 19 16 25 25 C 1.33396 * 114.91772 * 0.42510 * 24 20 19 26 26 S 1.75878 * 109.59603 * 359.77517 * 25 24 20 27 27 C 1.53779 * 87.08402 * 334.56577 * 12 11 9 28 28 H 1.08996 * 109.47601 * 299.99573 * 1 2 3 29 29 H 1.09008 * 109.47003 * 59.99972 * 1 2 3 30 30 H 1.09001 * 109.47089 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47346 * 179.97438 * 3 2 1 32 32 H 1.09003 * 109.47568 * 300.00538 * 3 2 1 33 33 H 1.09002 * 109.46886 * 59.99891 * 3 2 1 34 34 H 1.09001 * 109.47166 * 300.00086 * 4 2 1 35 35 H 1.09008 * 109.47235 * 59.99977 * 4 2 1 36 36 H 1.09005 * 109.47250 * 179.97438 * 4 2 1 37 37 H 0.97002 * 119.99411 * 0.02562 * 8 6 5 38 38 H 1.08997 * 113.61028 * 254.52900 * 11 9 8 39 39 H 1.08998 * 113.61447 * 25.34434 * 11 9 8 40 40 H 1.09007 * 109.47269 * 305.00322 * 14 12 11 41 41 H 1.08998 * 109.47235 * 64.99931 * 14 12 11 42 42 H 0.97000 * 120.00173 * 345.00430 * 15 14 12 43 43 H 1.09004 * 109.47175 * 44.99993 * 21 20 19 44 44 H 0.96698 * 113.99729 * 300.00588 * 22 21 20 45 45 H 1.48495 * 109.99757 * 58.68166 * 23 21 20 46 46 H 1.48501 * 109.99781 * 180.02562 * 23 21 20 47 47 H 1.07992 * 122.54272 * 180.20230 * 24 20 19 48 48 H 1.07998 * 125.19859 * 179.79400 * 25 24 20 49 49 H 1.09002 * 113.61557 * 270.88569 * 27 12 11 50 50 H 1.09004 * 113.61501 * 139.97990 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0139 -0.6845 1.1855 6 6 1.6523 -1.9723 1.3383 7 8 0.9509 -2.5094 0.5039 8 7 2.0680 -2.6658 2.4165 9 6 1.6739 -4.0669 2.5829 10 1 1.4197 -4.5511 1.6401 11 6 2.6474 -4.8817 3.4510 12 6 1.4101 -5.5543 4.0685 13 9 0.9924 -6.6987 3.3807 14 6 1.5226 -5.7765 5.5781 15 7 0.3551 -6.5250 6.0499 16 16 0.3736 -7.2302 7.5483 17 8 -0.8978 -7.8410 7.7200 18 8 1.5982 -7.9453 7.6400 19 6 0.4660 -5.9310 8.7349 20 6 0.4961 -6.0987 10.0579 21 6 0.4536 -7.4597 10.7036 22 8 -0.8749 -7.9809 10.6297 23 14 0.9660 -7.3162 12.4891 24 6 0.5727 -4.9281 10.7927 25 6 0.5959 -3.8093 10.0666 26 16 0.5249 -4.2143 8.3566 27 6 0.6283 -4.2855 3.6892 28 1 -0.3634 0.5137 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6766 1.9563 0.8900 34 1 1.6767 -1.7489 -1.2493 35 1 1.6767 -0.2073 -2.1393 36 1 3.1301 -0.7208 -1.2495 37 1 2.6276 -2.2369 3.0828 38 1 3.2757 -5.5644 2.8790 39 1 3.2148 -4.2755 4.1572 40 1 2.4289 -6.3418 5.7956 41 1 1.5654 -4.8125 6.0851 42 1 -0.4289 -6.6077 5.4848 43 1 1.1366 -8.1306 10.1824 44 1 -1.5373 -7.4338 11.0735 45 1 0.0617 -6.3795 13.2032 46 1 0.9289 -8.6519 13.1370 47 1 0.6073 -4.9209 11.8720 48 1 0.6503 -2.8080 10.4675 49 1 0.6426 -3.5165 4.4617 50 1 -0.3734 -4.4870 3.3096 There are 73 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 73 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_40_16499084_13652106.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 5 2021 22:56:49 Heat of formation + Delta-G solvation = -165.360350 kcal Electronic energy + Delta-G solvation = -37437.107308 eV Core-core repulsion = 32214.745728 eV Total energy + Delta-G solvation = -5222.361580 eV No. of doubly occupied orbitals = 73 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 423.111 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -48.85213 -41.86487 -40.10120 -39.97681 -38.42889 -37.94739 -37.28227 -37.07736 -36.32332 -35.27427 -33.86838 -31.45170 -28.64123 -28.37374 -28.29753 -28.09560 -27.05529 -24.72906 -24.35035 -22.62194 -21.79597 -21.40885 -20.70345 -20.03355 -19.78565 -19.18858 -18.81931 -18.40815 -17.84289 -17.55519 -17.22256 -17.02802 -16.88062 -16.59997 -16.25995 -16.23314 -16.03668 -15.87665 -15.47323 -15.45533 -15.33998 -15.29264 -14.82961 -14.51654 -14.33142 -14.15344 -14.02449 -13.66366 -13.61235 -13.51734 -13.37799 -13.34086 -13.28463 -13.24748 -12.95453 -12.93029 -12.86299 -12.79667 -12.76751 -12.54117 -12.44219 -12.36031 -12.30048 -11.66818 -11.60712 -11.45389 -11.39679 -11.12566 -10.83613 -10.79560 -10.39790 -10.22644 -9.60214 -4.98176 -0.87012 -0.66103 0.21645 0.65521 1.13361 1.14782 1.26974 1.53667 1.71532 1.80126 1.91714 2.47606 2.97809 3.03147 3.05231 3.20637 3.26171 3.41418 3.46887 3.54695 3.61982 3.73997 3.79527 3.94271 4.00454 4.09711 4.14255 4.21193 4.31017 4.35681 4.49756 4.55119 4.59700 4.60616 4.63620 4.72299 4.74281 4.76412 4.81831 4.86209 4.87882 4.91007 4.91601 5.02667 5.08973 5.15826 5.26610 5.29321 5.39931 5.58811 5.76337 6.36310 6.39512 7.33970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.129 3.871 3 C -0.138 4.138 4 C -0.181 4.181 5 O -0.366 6.366 6 C 0.643 3.357 7 O -0.596 6.596 8 N -0.683 5.683 9 C 0.138 3.862 10 H 0.100 0.900 11 C -0.145 4.145 12 C 0.087 3.913 13 F -0.198 7.198 14 C 0.101 3.899 15 N -1.111 6.111 16 S 2.727 3.273 17 O -0.971 6.971 18 O -0.977 6.977 19 C -0.795 4.795 20 C 0.003 3.997 21 C -0.135 4.135 22 O -0.536 6.536 23 Si 0.803 3.197 24 C -0.176 4.176 25 C -0.148 4.148 26 S 0.241 5.759 27 C -0.165 4.165 28 H 0.064 0.936 29 H 0.084 0.916 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.096 0.904 33 H 0.071 0.929 34 H 0.062 0.938 35 H 0.085 0.915 36 H 0.063 0.937 37 H 0.423 0.577 38 H 0.097 0.903 39 H 0.148 0.852 40 H 0.102 0.898 41 H 0.114 0.886 42 H 0.430 0.570 43 H 0.111 0.889 44 H 0.390 0.610 45 H -0.251 1.251 46 H -0.298 1.298 47 H 0.176 0.824 48 H 0.213 0.787 49 H 0.136 0.864 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.250 11.996 3.600 13.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.092 3.908 3 C -0.195 4.195 4 C -0.238 4.238 5 O -0.280 6.280 6 C 0.397 3.603 7 O -0.487 6.487 8 N -0.343 5.343 9 C 0.033 3.967 10 H 0.118 0.882 11 C -0.184 4.184 12 C 0.066 3.934 13 F -0.178 7.178 14 C -0.026 4.026 15 N -0.875 5.875 16 S 2.814 3.186 17 O -0.961 6.961 18 O -0.966 6.966 19 C -0.998 4.998 20 C -0.015 4.015 21 C -0.244 4.244 22 O -0.345 6.345 23 Si 0.703 3.297 24 C -0.205 4.205 25 C -0.285 4.285 26 S 0.507 5.493 27 C -0.203 4.203 28 H 0.083 0.917 29 H 0.103 0.897 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.115 0.885 33 H 0.090 0.910 34 H 0.081 0.919 35 H 0.103 0.897 36 H 0.082 0.918 37 H 0.261 0.739 38 H 0.116 0.884 39 H 0.166 0.834 40 H 0.121 0.879 41 H 0.132 0.868 42 H 0.268 0.732 43 H 0.129 0.871 44 H 0.240 0.760 45 H -0.176 1.176 46 H -0.226 1.226 47 H 0.193 0.807 48 H 0.230 0.770 49 H 0.154 0.846 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 5.078 11.251 2.512 12.597 hybrid contribution -1.651 -0.693 0.778 1.952 sum 3.427 10.559 3.290 11.578 Atomic orbital electron populations 1.22473 0.94104 1.03643 1.03522 1.22324 0.94381 0.92585 0.81489 1.21888 1.02505 0.90808 1.04251 1.22484 1.01697 1.02203 0.97461 1.86307 1.71449 1.23191 1.47100 1.18444 0.78600 0.80829 0.82475 1.90928 1.42248 1.70972 1.44527 1.44553 1.55023 1.11596 1.23137 1.22414 0.96198 0.79237 0.98842 0.88198 1.24094 0.95974 0.98850 0.99479 1.21806 0.98941 0.82608 0.90010 1.92881 1.91341 1.52645 1.80932 1.22168 0.88661 0.98664 0.93078 1.55225 1.26220 1.72295 1.33750 1.00753 0.72958 0.72714 0.72128 1.93614 1.43026 1.73985 1.85442 1.93573 1.47386 1.69191 1.86485 1.35388 1.29132 1.19862 1.15412 1.19095 0.93591 0.97500 0.91317 1.25815 0.88393 0.93041 1.17112 1.86749 1.16441 1.51929 1.79350 0.93627 0.88534 0.79068 0.68455 1.20465 1.06772 0.90178 1.03069 1.26640 1.00867 1.04547 0.96439 1.83678 1.68118 0.91286 1.06197 1.24325 0.99789 0.96363 0.99861 0.91718 0.89712 0.91867 0.91093 0.88540 0.90990 0.91895 0.89661 0.91844 0.73861 0.88428 0.83386 0.87949 0.86782 0.73245 0.87126 0.75996 1.17579 1.22576 0.80735 0.77006 0.84585 0.90060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.30 8.37 71.98 0.60 0.31 16 2 C 0.13 0.13 1.13 -10.79 -0.01 0.12 16 3 C -0.14 0.55 8.85 71.98 0.64 1.19 16 4 C -0.18 -0.37 8.37 71.98 0.60 0.23 16 5 O -0.37 -0.88 9.94 -55.48 -0.55 -1.44 16 6 C 0.64 2.30 8.06 129.79 1.05 3.35 16 7 O -0.60 -6.08 11.48 19.79 0.23 -5.85 16 8 N -0.68 3.01 5.36 -567.60 -3.04 -0.03 16 9 C 0.14 -0.61 4.22 45.52 0.19 -0.42 16 10 H 0.10 0.18 7.47 -2.39 -0.02 0.16 16 11 C -0.15 1.36 7.29 31.12 0.23 1.59 16 12 C 0.09 -0.47 1.70 -10.27 -0.02 -0.49 16 13 F -0.20 -0.47 16.80 44.97 0.76 0.29 16 14 C 0.10 -0.63 5.72 86.38 0.49 -0.13 16 15 N -1.11 1.06 5.62 -187.49 -1.05 0.01 16 16 S 2.73 17.52 5.07 -56.49 -0.29 17.23 16 17 O -0.97 -13.72 17.41 -125.53 -2.19 -15.91 16 18 O -0.98 -11.31 16.99 -128.00 -2.17 -13.48 16 19 C -0.80 -1.00 6.46 66.72 0.43 -0.56 16 20 C 0.00 0.00 5.13 -20.92 -0.11 -0.11 16 21 C -0.14 -0.48 2.33 71.23 0.17 -0.32 16 22 O -0.54 -4.09 12.27 -147.82 -1.81 -5.90 16 23 Si 0.80 -1.98 30.45 68.60 2.09 0.11 16 24 C -0.18 0.96 8.74 21.22 0.19 1.15 16 25 C -0.15 1.32 11.23 66.72 0.75 2.07 16 26 S 0.24 -1.72 21.09 -56.49 -1.19 -2.91 16 27 C -0.16 1.14 7.32 31.12 0.23 1.37 16 28 H 0.06 0.03 8.14 -2.39 -0.02 0.01 16 29 H 0.08 -0.11 8.14 -2.38 -0.02 -0.13 16 30 H 0.06 0.45 5.88 -2.39 -0.01 0.44 16 31 H 0.07 -0.30 8.14 -2.39 -0.02 -0.32 16 32 H 0.10 -0.65 8.14 -2.39 -0.02 -0.67 16 33 H 0.07 -0.33 8.14 -2.39 -0.02 -0.35 16 34 H 0.06 0.48 5.88 -2.39 -0.01 0.46 16 35 H 0.08 -0.08 8.14 -2.38 -0.02 -0.10 16 36 H 0.06 0.08 8.14 -2.38 -0.02 0.06 16 37 H 0.42 -4.56 8.84 -92.71 -0.82 -5.37 16 38 H 0.10 -0.78 8.14 -2.39 -0.02 -0.80 16 39 H 0.15 -2.45 8.08 -2.39 -0.02 -2.47 16 40 H 0.10 -0.62 7.75 -2.38 -0.02 -0.63 16 41 H 0.11 -1.45 5.95 -2.39 -0.01 -1.47 16 42 H 0.43 -1.02 8.46 -96.74 -0.82 -1.84 16 43 H 0.11 0.65 7.26 -2.39 -0.02 0.64 16 44 H 0.39 -0.07 8.70 -74.06 -0.64 -0.71 16 45 H -0.25 0.73 6.81 99.48 0.68 1.41 16 46 H -0.30 -1.66 7.11 99.48 0.71 -0.95 16 47 H 0.18 -1.68 5.53 -2.91 -0.02 -1.70 16 48 H 0.21 -3.38 8.06 -2.91 -0.02 -3.40 16 49 H 0.14 -1.72 7.90 -2.39 -0.02 -1.73 16 50 H 0.08 -0.30 8.14 -2.39 -0.02 -0.32 16 Total: 0.00 -33.28 430.36 -5.05 -38.33 By element: Atomic # 1 Polarization: -18.55 SS G_CDS: -1.25 Total: -19.80 kcal Atomic # 6 Polarization: 3.93 SS G_CDS: 5.42 Total: 9.35 kcal Atomic # 7 Polarization: 4.08 SS G_CDS: -4.10 Total: -0.02 kcal Atomic # 8 Polarization: -36.08 SS G_CDS: -6.50 Total: -42.58 kcal Atomic # 9 Polarization: -0.47 SS G_CDS: 0.76 Total: 0.29 kcal Atomic # 14 Polarization: -1.98 SS G_CDS: 2.09 Total: 0.11 kcal Atomic # 16 Polarization: 15.79 SS G_CDS: -1.48 Total: 14.32 kcal Total: -33.28 -5.05 -38.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_16499084_13652106.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.031 kcal (2) G-P(sol) polarization free energy of solvation -33.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds