Wall clock time and date at job start Fri Mar 5 2021 22:56:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.46951 * 2 1 4 4 C 1.52997 * 109.47286 * 239.99709 * 2 1 3 5 5 O 1.45205 * 109.46947 * 119.99700 * 2 1 3 6 6 C 1.34635 * 116.99940 * 60.00080 * 5 2 1 7 7 O 1.21514 * 119.99862 * 359.97438 * 6 5 2 8 8 N 1.34776 * 120.00123 * 180.02562 * 6 5 2 9 9 C 1.46489 * 120.00225 * 180.02562 * 8 6 5 10 10 H 1.09003 * 112.84893 * 336.19030 * 9 8 6 11 11 C 1.53787 * 113.69516 * 107.46016 * 9 8 6 12 12 C 1.53779 * 87.08088 * 139.99438 * 11 9 8 13 13 F 1.39895 * 113.61860 * 89.11841 * 12 11 9 14 14 C 1.53000 * 113.61106 * 220.02303 * 12 11 9 15 15 N 1.46498 * 109.47226 * 277.49364 * 14 12 11 16 16 S 1.65602 * 120.00248 * 162.62609 * 15 14 12 17 17 O 1.42102 * 106.40139 * 181.89597 * 16 15 14 18 18 O 1.42099 * 106.40234 * 314.81568 * 16 15 14 19 19 C 1.76200 * 107.21585 * 68.35730 * 16 15 14 20 20 C 1.33387 * 122.53724 * 166.59028 * 19 16 15 21 21 C 1.50703 * 125.20806 * 0.02562 * 20 19 16 22 22 O 1.42902 * 109.46826 * 39.11400 * 21 20 19 23 23 Si 1.86297 * 109.47403 * 159.11274 * 21 20 19 24 24 S 1.75883 * 109.59336 * 180.02562 * 20 19 16 25 25 C 1.75886 * 90.96876 * 0.02562 * 24 20 19 26 26 C 1.33388 * 109.59285 * 359.73206 * 25 24 20 27 27 C 1.53786 * 87.08463 * 334.56806 * 12 11 9 28 28 H 1.08998 * 109.47546 * 300.00223 * 1 2 3 29 29 H 1.08998 * 109.46789 * 60.00390 * 1 2 3 30 30 H 1.08996 * 109.47059 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47273 * 180.02562 * 3 2 1 32 32 H 1.08998 * 109.47056 * 299.99447 * 3 2 1 33 33 H 1.08998 * 109.47440 * 60.00033 * 3 2 1 34 34 H 1.09001 * 109.46859 * 299.99839 * 4 2 1 35 35 H 1.08998 * 109.47287 * 60.00206 * 4 2 1 36 36 H 1.08998 * 109.46915 * 180.02562 * 4 2 1 37 37 H 0.97001 * 119.99662 * 359.97438 * 8 6 5 38 38 H 1.09001 * 113.61161 * 254.54183 * 11 9 8 39 39 H 1.08996 * 113.61217 * 25.35620 * 11 9 8 40 40 H 1.08999 * 109.47667 * 37.49411 * 14 12 11 41 41 H 1.09000 * 109.47269 * 157.49613 * 14 12 11 42 42 H 0.97002 * 120.00241 * 342.63544 * 15 14 12 43 43 H 1.09002 * 109.46947 * 279.11922 * 21 20 19 44 44 H 0.96704 * 113.99787 * 66.27909 * 22 21 20 45 45 H 1.48496 * 110.00108 * 180.02562 * 23 21 20 46 46 H 1.48501 * 110.00243 * 301.32191 * 23 21 20 47 47 H 1.08004 * 125.19894 * 180.02562 * 25 24 20 48 48 H 1.08002 * 122.53534 * 180.24382 * 26 25 24 49 49 H 1.09002 * 113.61515 * 270.89176 * 27 12 11 50 50 H 1.08994 * 113.61331 * 139.98021 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 8 2.0140 -0.6844 1.1856 6 6 1.6522 -1.9722 1.3384 7 8 0.9509 -2.5094 0.5041 8 7 2.0671 -2.6653 2.4173 9 6 1.6740 -4.0667 2.5833 10 1 0.7600 -4.3166 2.0445 11 6 2.8212 -5.0628 2.3454 12 6 2.2716 -5.8603 3.5398 13 9 1.3083 -6.8102 3.1839 14 6 3.3616 -6.4295 4.4502 15 7 3.8651 -7.6834 3.8841 16 16 5.3141 -8.3002 4.3961 17 8 5.5388 -9.4800 3.6366 18 8 6.2256 -7.2104 4.4271 19 6 5.0998 -8.8172 6.0668 20 6 5.9841 -9.5915 6.6973 21 6 7.2590 -10.1230 6.0945 22 8 7.8526 -9.1165 5.2719 23 14 8.4422 -10.5899 7.4557 24 16 5.4348 -9.8976 8.3399 25 6 3.9920 -8.9286 8.0697 26 6 4.0030 -8.4470 6.8258 27 6 1.6740 -4.5373 4.0474 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9562 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 1.6767 -1.7490 -1.2491 35 1 1.6768 -0.2075 -2.1392 36 1 3.1300 -0.7217 -1.2489 37 1 2.6267 -2.2364 3.0835 38 1 2.7490 -5.5932 1.3959 39 1 3.8103 -4.6392 2.5194 40 1 4.1790 -5.7130 4.5304 41 1 2.9460 -6.6188 5.4400 42 1 3.3497 -8.1523 3.2093 43 1 7.0361 -11.0018 5.4894 44 1 8.1651 -8.3428 5.7608 45 1 9.7037 -11.1149 6.8743 46 1 8.7293 -9.4075 8.3069 47 1 3.2180 -8.7471 8.8008 48 1 3.2142 -7.8187 6.4392 49 1 2.3495 -3.9704 4.6881 50 1 0.6758 -4.6435 4.4719 There are 73 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 73 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV m_40_16499084_14772022.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 5 2021 22:56:54 Heat of formation + Delta-G solvation = -158.989601 kcal Electronic energy + Delta-G solvation = -37560.512201 eV Core-core repulsion = 32338.426878 eV Total energy + Delta-G solvation = -5222.085323 eV No. of doubly occupied orbitals = 73 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 423.111 amu Computer time = 2.77 seconds Orbital eigenvalues (eV) -48.96288 -41.79039 -40.09415 -39.74832 -38.13751 -37.91481 -37.76682 -36.66873 -36.24342 -35.20576 -33.88119 -31.90065 -28.71851 -28.32923 -28.28857 -27.62548 -27.26748 -24.85278 -24.49260 -22.62366 -21.75915 -21.51357 -20.89315 -20.23065 -19.43547 -19.13236 -18.68275 -18.23581 -17.79951 -17.50141 -17.43182 -17.10729 -17.01562 -16.70009 -16.63302 -16.24177 -15.89802 -15.63811 -15.52036 -15.36675 -15.32119 -15.22134 -14.96622 -14.44991 -14.26808 -14.17137 -14.12347 -14.00361 -13.82196 -13.42118 -13.38953 -13.27311 -13.01324 -12.97602 -12.94176 -12.87307 -12.83312 -12.81165 -12.73050 -12.57157 -12.36391 -12.26327 -12.24885 -11.79538 -11.73764 -11.58173 -11.30782 -11.25443 -10.99056 -10.76390 -10.26247 -10.19422 -9.85057 -5.28019 -0.68307 -0.55335 0.27698 0.57384 0.93533 1.07663 1.13816 1.41689 1.73863 1.81961 1.90692 2.71681 2.78989 2.83112 2.93963 3.03880 3.15012 3.22054 3.35829 3.39870 3.63839 3.76655 3.77355 3.82996 3.92292 3.95138 3.96946 4.11282 4.23635 4.28254 4.29494 4.36076 4.51166 4.52882 4.56323 4.60428 4.63191 4.69079 4.73889 4.76293 4.78267 4.86361 4.93104 4.97118 5.01124 5.08541 5.22511 5.36573 5.44413 5.57557 5.75597 6.10497 6.35201 7.38356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.137 3.863 3 C -0.142 4.142 4 C -0.184 4.184 5 O -0.364 6.364 6 C 0.651 3.349 7 O -0.564 6.564 8 N -0.701 5.701 9 C 0.145 3.855 10 H 0.128 0.872 11 C -0.171 4.171 12 C 0.092 3.908 13 F -0.178 7.178 14 C 0.106 3.894 15 N -1.119 6.119 16 S 2.723 3.277 17 O -0.942 6.942 18 O -0.946 6.946 19 C -0.666 4.666 20 C -0.098 4.098 21 C -0.078 4.078 22 O -0.521 6.521 23 Si 0.680 3.320 24 S 0.165 5.835 25 C -0.208 4.208 26 C -0.093 4.093 27 C -0.159 4.159 28 H 0.060 0.940 29 H 0.072 0.928 30 H 0.087 0.913 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.067 0.933 34 H 0.087 0.913 35 H 0.072 0.928 36 H 0.060 0.940 37 H 0.408 0.592 38 H 0.093 0.907 39 H 0.110 0.890 40 H 0.106 0.894 41 H 0.081 0.919 42 H 0.425 0.575 43 H 0.151 0.849 44 H 0.388 0.612 45 H -0.227 1.227 46 H -0.239 1.239 47 H 0.176 0.824 48 H 0.153 0.847 49 H 0.112 0.888 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.559 1.734 6.462 6.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.100 3.900 3 C -0.199 4.199 4 C -0.242 4.242 5 O -0.279 6.279 6 C 0.405 3.595 7 O -0.452 6.452 8 N -0.360 5.360 9 C 0.040 3.960 10 H 0.146 0.854 11 C -0.210 4.210 12 C 0.072 3.928 13 F -0.158 7.158 14 C -0.020 4.020 15 N -0.881 5.881 16 S 2.808 3.192 17 O -0.932 6.932 18 O -0.936 6.936 19 C -0.765 4.765 20 C -0.219 4.219 21 C -0.189 4.189 22 O -0.329 6.329 23 Si 0.576 3.424 24 S 0.429 5.571 25 C -0.343 4.343 26 C -0.121 4.121 27 C -0.198 4.198 28 H 0.079 0.921 29 H 0.091 0.909 30 H 0.106 0.894 31 H 0.086 0.914 32 H 0.101 0.899 33 H 0.086 0.914 34 H 0.106 0.894 35 H 0.091 0.909 36 H 0.079 0.921 37 H 0.244 0.756 38 H 0.112 0.888 39 H 0.129 0.871 40 H 0.124 0.876 41 H 0.099 0.901 42 H 0.261 0.739 43 H 0.168 0.832 44 H 0.238 0.762 45 H -0.150 1.150 46 H -0.163 1.163 47 H 0.194 0.806 48 H 0.170 0.830 49 H 0.131 0.869 50 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 0.109 0.483 6.822 6.840 hybrid contribution -1.161 1.649 -0.861 2.193 sum -1.052 2.132 5.961 6.418 Atomic orbital electron populations 1.22524 0.93811 1.05054 1.02746 1.22134 0.94459 0.91570 0.81825 1.21879 1.02360 0.92316 1.03351 1.22523 1.01649 1.03450 0.96536 1.86309 1.71447 1.23343 1.46784 1.18144 0.78574 0.80619 0.82176 1.90931 1.40792 1.70506 1.42980 1.44628 1.55549 1.11846 1.23942 1.22470 0.99161 0.77989 0.96350 0.85417 1.24264 1.00578 0.96942 0.99181 1.21647 0.87468 0.86526 0.97208 1.92903 1.64391 1.65727 1.92815 1.21918 0.97267 0.86411 0.96452 1.55565 1.43599 1.33724 1.55164 1.01392 0.71509 0.73612 0.72714 1.93604 1.83036 1.48304 1.68223 1.93565 1.59221 1.54392 1.86386 1.29893 1.03343 1.15447 1.27798 1.24955 0.99754 0.99271 0.97960 1.25064 0.94228 0.95118 1.04445 1.86673 1.78734 1.31668 1.35805 0.95099 0.82136 0.86741 0.78424 1.84246 1.15871 1.48488 1.08534 1.25926 1.02805 1.04304 1.01285 1.19873 0.97306 1.01581 0.93364 1.24043 1.04153 0.94295 0.97324 0.92110 0.90893 0.89432 0.91371 0.89910 0.91386 0.89421 0.90895 0.92079 0.75616 0.88816 0.87114 0.87554 0.90102 0.73938 0.83222 0.76192 1.15017 1.16276 0.80649 0.82961 0.86936 0.88305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.21 8.37 37.16 0.31 0.10 16 2 C 0.14 0.16 1.13 -90.62 -0.10 0.06 16 3 C -0.14 0.12 8.85 37.16 0.33 0.45 16 4 C -0.18 -0.24 8.37 37.16 0.31 0.07 16 5 O -0.36 -0.74 9.94 -40.31 -0.40 -1.14 16 6 C 0.65 1.49 8.06 54.06 0.44 1.92 16 7 O -0.56 -2.69 11.48 -19.28 -0.22 -2.91 16 8 N -0.70 0.74 5.36 -57.93 -0.31 0.43 16 9 C 0.14 -0.24 4.22 -67.12 -0.28 -0.52 16 10 H 0.13 0.03 7.46 -51.93 -0.39 -0.36 16 11 C -0.17 0.33 7.32 -25.92 -0.19 0.14 16 12 C 0.09 -0.24 1.75 -89.81 -0.16 -0.39 16 13 F -0.18 0.06 16.62 2.25 0.04 0.09 16 14 C 0.11 -0.32 5.42 -4.04 -0.02 -0.34 16 15 N -1.12 1.09 5.68 -10.61 -0.06 1.03 16 16 S 2.72 5.69 4.23 -107.50 -0.45 5.23 16 17 O -0.94 -5.10 17.19 -61.63 -1.06 -6.16 16 18 O -0.95 -3.68 16.06 -65.19 -1.05 -4.72 16 19 C -0.67 -0.60 5.71 -41.21 -0.24 -0.83 16 20 C -0.10 -0.07 5.77 -36.00 -0.21 -0.27 16 21 C -0.08 -0.05 2.42 36.01 0.09 0.04 16 22 O -0.52 -1.27 9.69 -59.71 -0.58 -1.85 16 23 Si 0.68 -0.91 31.09 -169.99 -5.28 -6.20 16 24 S 0.16 -0.24 20.87 -107.50 -2.24 -2.48 16 25 C -0.21 0.37 11.23 29.04 0.33 0.70 16 26 C -0.09 0.10 9.52 -41.21 -0.39 -0.29 16 27 C -0.16 0.66 7.29 -25.91 -0.19 0.47 16 28 H 0.06 0.05 8.14 -51.93 -0.42 -0.37 16 29 H 0.07 -0.01 8.14 -51.93 -0.42 -0.43 16 30 H 0.09 0.28 5.88 -51.93 -0.31 -0.02 16 31 H 0.07 -0.06 8.14 -51.93 -0.42 -0.48 16 32 H 0.08 -0.17 8.14 -51.93 -0.42 -0.59 16 33 H 0.07 -0.07 8.14 -51.93 -0.42 -0.49 16 34 H 0.09 0.30 5.88 -51.93 -0.31 -0.01 16 35 H 0.07 0.00 8.14 -51.93 -0.42 -0.42 16 36 H 0.06 0.07 8.14 -51.93 -0.42 -0.36 16 37 H 0.41 -1.40 8.84 -40.82 -0.36 -1.76 16 38 H 0.09 -0.08 8.14 -51.93 -0.42 -0.50 16 39 H 0.11 -0.31 7.97 -51.93 -0.41 -0.72 16 40 H 0.11 -0.41 7.43 -51.93 -0.39 -0.79 16 41 H 0.08 -0.41 5.40 -51.93 -0.28 -0.69 16 42 H 0.42 -0.65 8.19 -34.47 -0.28 -0.93 16 43 H 0.15 0.00 7.96 -51.93 -0.41 -0.41 16 44 H 0.39 -0.10 8.46 45.56 0.39 0.28 16 45 H -0.23 -0.22 7.11 56.52 0.40 0.18 16 46 H -0.24 -0.02 7.11 56.52 0.40 0.38 16 47 H 0.18 -0.75 8.06 -52.48 -0.42 -1.18 16 48 H 0.15 -0.55 4.84 -52.49 -0.25 -0.80 16 49 H 0.11 -0.72 8.08 -51.93 -0.42 -1.14 16 50 H 0.10 -0.42 8.14 -51.93 -0.42 -0.85 16 LS Contribution 425.57 15.07 6.41 6.41 Total: 0.00 -11.41 425.57 -12.04 -23.45 By element: Atomic # 1 Polarization: -5.62 SS G_CDS: -6.85 Total: -12.47 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: 0.02 Total: 1.29 kcal Atomic # 7 Polarization: 1.83 SS G_CDS: -0.37 Total: 1.46 kcal Atomic # 8 Polarization: -13.48 SS G_CDS: -3.31 Total: -16.79 kcal Atomic # 9 Polarization: 0.06 SS G_CDS: 0.04 Total: 0.09 kcal Atomic # 14 Polarization: -0.91 SS G_CDS: -5.28 Total: -6.20 kcal Atomic # 16 Polarization: 5.45 SS G_CDS: -2.70 Total: 2.75 kcal Total LS contribution 6.41 Total: 6.41 kcal Total: -11.41 -12.04 -23.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_16499084_14772022.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.544 kcal (2) G-P(sol) polarization free energy of solvation -11.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.77 seconds