Wall clock time and date at job start Fri Mar 5 2021 22:56:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.46951 * 2 1 4 4 C 1.52997 * 109.47286 * 239.99709 * 2 1 3 5 5 O 1.45205 * 109.46947 * 119.99700 * 2 1 3 6 6 C 1.34635 * 116.99940 * 60.00080 * 5 2 1 7 7 O 1.21514 * 119.99862 * 359.97438 * 6 5 2 8 8 N 1.34776 * 120.00123 * 180.02562 * 6 5 2 9 9 C 1.46489 * 120.00225 * 180.02562 * 8 6 5 10 10 H 1.09003 * 112.84893 * 336.19030 * 9 8 6 11 11 C 1.53787 * 113.69516 * 107.46016 * 9 8 6 12 12 C 1.53779 * 87.08088 * 139.99438 * 11 9 8 13 13 F 1.39895 * 113.61860 * 89.11841 * 12 11 9 14 14 C 1.53000 * 113.61106 * 220.02303 * 12 11 9 15 15 N 1.46498 * 109.47226 * 277.49364 * 14 12 11 16 16 S 1.65602 * 120.00248 * 162.62609 * 15 14 12 17 17 O 1.42102 * 106.40139 * 181.89597 * 16 15 14 18 18 O 1.42099 * 106.40234 * 314.81568 * 16 15 14 19 19 C 1.76200 * 107.21585 * 68.35730 * 16 15 14 20 20 C 1.33387 * 122.53724 * 166.59028 * 19 16 15 21 21 C 1.50703 * 125.20806 * 0.02562 * 20 19 16 22 22 O 1.42902 * 109.46826 * 39.11400 * 21 20 19 23 23 Si 1.86297 * 109.47403 * 159.11274 * 21 20 19 24 24 S 1.75883 * 109.59336 * 180.02562 * 20 19 16 25 25 C 1.75886 * 90.96876 * 0.02562 * 24 20 19 26 26 C 1.33388 * 109.59285 * 359.73206 * 25 24 20 27 27 C 1.53786 * 87.08463 * 334.56806 * 12 11 9 28 28 H 1.08998 * 109.47546 * 300.00223 * 1 2 3 29 29 H 1.08998 * 109.46789 * 60.00390 * 1 2 3 30 30 H 1.08996 * 109.47059 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47273 * 180.02562 * 3 2 1 32 32 H 1.08998 * 109.47056 * 299.99447 * 3 2 1 33 33 H 1.08998 * 109.47440 * 60.00033 * 3 2 1 34 34 H 1.09001 * 109.46859 * 299.99839 * 4 2 1 35 35 H 1.08998 * 109.47287 * 60.00206 * 4 2 1 36 36 H 1.08998 * 109.46915 * 180.02562 * 4 2 1 37 37 H 0.97001 * 119.99662 * 359.97438 * 8 6 5 38 38 H 1.09001 * 113.61161 * 254.54183 * 11 9 8 39 39 H 1.08996 * 113.61217 * 25.35620 * 11 9 8 40 40 H 1.08999 * 109.47667 * 37.49411 * 14 12 11 41 41 H 1.09000 * 109.47269 * 157.49613 * 14 12 11 42 42 H 0.97002 * 120.00241 * 342.63544 * 15 14 12 43 43 H 1.09002 * 109.46947 * 279.11922 * 21 20 19 44 44 H 0.96704 * 113.99787 * 66.27909 * 22 21 20 45 45 H 1.48496 * 110.00108 * 180.02562 * 23 21 20 46 46 H 1.48501 * 110.00243 * 301.32191 * 23 21 20 47 47 H 1.08004 * 125.19894 * 180.02562 * 25 24 20 48 48 H 1.08002 * 122.53534 * 180.24382 * 26 25 24 49 49 H 1.09002 * 113.61515 * 270.89176 * 27 12 11 50 50 H 1.08994 * 113.61331 * 139.98021 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 8 2.0140 -0.6844 1.1856 6 6 1.6522 -1.9722 1.3384 7 8 0.9509 -2.5094 0.5041 8 7 2.0671 -2.6653 2.4173 9 6 1.6740 -4.0667 2.5833 10 1 0.7600 -4.3166 2.0445 11 6 2.8212 -5.0628 2.3454 12 6 2.2716 -5.8603 3.5398 13 9 1.3083 -6.8102 3.1839 14 6 3.3616 -6.4295 4.4502 15 7 3.8651 -7.6834 3.8841 16 16 5.3141 -8.3002 4.3961 17 8 5.5388 -9.4800 3.6366 18 8 6.2256 -7.2104 4.4271 19 6 5.0998 -8.8172 6.0668 20 6 5.9841 -9.5915 6.6973 21 6 7.2590 -10.1230 6.0945 22 8 7.8526 -9.1165 5.2719 23 14 8.4422 -10.5899 7.4557 24 16 5.4348 -9.8976 8.3399 25 6 3.9920 -8.9286 8.0697 26 6 4.0030 -8.4470 6.8258 27 6 1.6740 -4.5373 4.0474 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9562 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 1.6767 -1.7490 -1.2491 35 1 1.6768 -0.2075 -2.1392 36 1 3.1300 -0.7217 -1.2489 37 1 2.6267 -2.2364 3.0835 38 1 2.7490 -5.5932 1.3959 39 1 3.8103 -4.6392 2.5194 40 1 4.1790 -5.7130 4.5304 41 1 2.9460 -6.6188 5.4400 42 1 3.3497 -8.1523 3.2093 43 1 7.0361 -11.0018 5.4894 44 1 8.1651 -8.3428 5.7608 45 1 9.7037 -11.1149 6.8743 46 1 8.7293 -9.4075 8.3069 47 1 3.2180 -8.7471 8.8008 48 1 3.2142 -7.8187 6.4392 49 1 2.3495 -3.9704 4.6881 50 1 0.6758 -4.6435 4.4719 There are 73 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 73 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_40_16499084_14772022.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 5 2021 22:56:53 Heat of formation + Delta-G solvation = -163.331436 kcal Electronic energy + Delta-G solvation = -37560.700477 eV Core-core repulsion = 32338.426878 eV Total energy + Delta-G solvation = -5222.273600 eV No. of doubly occupied orbitals = 73 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 423.111 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -48.85618 -41.88885 -39.99303 -39.71507 -38.31578 -38.00366 -37.81659 -36.88958 -36.21363 -35.28613 -33.87667 -31.83922 -28.59866 -28.39304 -28.31758 -27.58387 -27.05146 -24.80614 -24.46312 -22.59476 -21.71568 -21.48087 -20.87791 -20.25043 -19.42589 -19.20231 -18.71385 -18.21972 -17.79713 -17.52931 -17.38858 -17.21493 -16.91946 -16.72475 -16.61816 -16.21027 -15.95947 -15.63847 -15.51456 -15.37899 -15.31262 -15.16660 -14.82371 -14.49301 -14.24953 -14.14284 -14.04601 -13.89354 -13.67272 -13.41215 -13.35854 -13.25042 -13.23925 -13.12835 -12.96546 -12.93909 -12.88574 -12.79489 -12.76708 -12.51118 -12.45572 -12.32062 -12.30307 -11.70333 -11.63176 -11.47514 -11.41996 -11.25656 -11.15140 -10.63618 -10.23839 -10.11507 -9.72148 -5.19992 -0.77167 -0.50021 0.37039 0.66675 1.01800 1.11806 1.17169 1.48414 1.68719 1.78449 1.90804 2.65089 2.97629 3.00367 3.01764 3.07571 3.27005 3.27306 3.51927 3.55439 3.61876 3.71960 3.77556 3.92285 3.97808 4.08289 4.16293 4.21437 4.34100 4.37829 4.51260 4.54227 4.58274 4.58997 4.66830 4.72714 4.74379 4.76899 4.81141 4.85764 4.86068 4.88846 4.92036 5.03149 5.14611 5.16093 5.24757 5.27807 5.38343 5.56212 5.83534 6.13320 6.35958 7.30635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.127 3.873 3 C -0.138 4.138 4 C -0.181 4.181 5 O -0.367 6.367 6 C 0.643 3.357 7 O -0.595 6.595 8 N -0.686 5.686 9 C 0.136 3.864 10 H 0.104 0.896 11 C -0.175 4.175 12 C 0.092 3.908 13 F -0.193 7.193 14 C 0.098 3.902 15 N -1.114 6.114 16 S 2.732 3.268 17 O -0.986 6.986 18 O -0.971 6.971 19 C -0.674 4.674 20 C -0.123 4.123 21 C -0.100 4.100 22 O -0.544 6.544 23 Si 0.765 3.235 24 S 0.194 5.806 25 C -0.205 4.205 26 C -0.105 4.105 27 C -0.139 4.139 28 H 0.063 0.937 29 H 0.086 0.914 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.097 0.903 33 H 0.071 0.929 34 H 0.062 0.938 35 H 0.086 0.914 36 H 0.061 0.939 37 H 0.422 0.578 38 H 0.075 0.925 39 H 0.122 0.878 40 H 0.118 0.882 41 H 0.109 0.891 42 H 0.427 0.573 43 H 0.146 0.854 44 H 0.395 0.605 45 H -0.264 1.264 46 H -0.254 1.254 47 H 0.205 0.795 48 H 0.176 0.824 49 H 0.144 0.856 50 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.170 2.767 8.924 9.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.091 3.909 3 C -0.195 4.195 4 C -0.238 4.238 5 O -0.282 6.282 6 C 0.396 3.604 7 O -0.486 6.486 8 N -0.345 5.345 9 C 0.032 3.968 10 H 0.122 0.878 11 C -0.214 4.214 12 C 0.072 3.928 13 F -0.173 7.173 14 C -0.028 4.028 15 N -0.877 5.877 16 S 2.820 3.180 17 O -0.976 6.976 18 O -0.961 6.961 19 C -0.776 4.776 20 C -0.244 4.244 21 C -0.209 4.209 22 O -0.354 6.354 23 Si 0.662 3.338 24 S 0.458 5.542 25 C -0.340 4.340 26 C -0.132 4.132 27 C -0.178 4.178 28 H 0.083 0.917 29 H 0.104 0.896 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.116 0.884 33 H 0.090 0.910 34 H 0.081 0.919 35 H 0.105 0.895 36 H 0.080 0.920 37 H 0.260 0.740 38 H 0.093 0.907 39 H 0.140 0.860 40 H 0.136 0.864 41 H 0.126 0.874 42 H 0.263 0.737 43 H 0.163 0.837 44 H 0.246 0.754 45 H -0.189 1.189 46 H -0.178 1.178 47 H 0.222 0.778 48 H 0.193 0.807 49 H 0.162 0.838 50 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -0.507 1.531 9.279 9.419 hybrid contribution -1.002 1.320 -1.634 2.327 sum -1.509 2.851 7.645 8.298 Atomic orbital electron populations 1.22472 0.93987 1.03674 1.03577 1.22349 0.94487 0.92590 0.81456 1.21888 1.02453 0.90820 1.04293 1.22477 1.01620 1.02220 0.97482 1.86313 1.71475 1.23219 1.47187 1.18445 0.78541 0.80764 0.82619 1.90918 1.42297 1.71076 1.44293 1.44603 1.54947 1.11828 1.23151 1.22486 0.98324 0.77611 0.98394 0.87842 1.24318 1.01078 0.97045 0.98940 1.21721 0.87369 0.86796 0.96928 1.92876 1.65021 1.66444 1.93006 1.22234 0.97518 0.85662 0.97385 1.55320 1.42683 1.34429 1.55281 1.00678 0.71756 0.72591 0.72943 1.93541 1.84150 1.49970 1.69921 1.93523 1.60695 1.54903 1.86973 1.29745 1.04557 1.16303 1.26997 1.25086 0.99850 0.99928 0.99543 1.25454 0.95395 0.94698 1.05309 1.86639 1.79106 1.32453 1.37223 0.94186 0.78937 0.84539 0.76150 1.84115 1.15828 1.47875 1.06333 1.26357 1.02964 1.03184 1.01545 1.20109 0.97261 1.02266 0.93552 1.24042 1.05294 0.92740 0.95711 0.91749 0.89551 0.91843 0.91201 0.88403 0.91006 0.91889 0.89521 0.91985 0.74014 0.90653 0.86002 0.86411 0.87356 0.73675 0.83657 0.75386 1.18884 1.17837 0.77802 0.80723 0.83791 0.87512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.54 8.37 71.98 0.60 0.06 16 2 C 0.13 0.35 1.13 -10.79 -0.01 0.34 16 3 C -0.14 0.32 8.85 71.98 0.64 0.96 16 4 C -0.18 -0.65 8.37 71.98 0.60 -0.05 16 5 O -0.37 -1.70 9.94 -55.45 -0.55 -2.25 16 6 C 0.64 3.70 8.06 129.79 1.05 4.75 16 7 O -0.60 -7.07 11.48 19.80 0.23 -6.84 16 8 N -0.69 1.29 5.36 -567.61 -3.04 -1.75 16 9 C 0.14 -0.38 4.22 45.52 0.19 -0.19 16 10 H 0.10 0.25 7.46 -2.39 -0.02 0.23 16 11 C -0.17 0.56 7.32 31.12 0.23 0.79 16 12 C 0.09 -0.52 1.75 -10.27 -0.02 -0.54 16 13 F -0.19 0.06 16.62 44.97 0.75 0.81 16 14 C 0.10 -0.70 5.42 86.38 0.47 -0.23 16 15 N -1.11 1.80 5.68 -187.49 -1.06 0.73 16 16 S 2.73 14.54 4.23 -56.49 -0.24 14.30 16 17 O -0.99 -12.98 17.19 -123.74 -2.13 -15.11 16 18 O -0.97 -8.71 16.06 -120.34 -1.93 -10.64 16 19 C -0.67 -1.20 5.71 21.21 0.12 -1.08 16 20 C -0.12 -0.18 5.77 24.59 0.14 -0.04 16 21 C -0.10 -0.25 2.42 71.24 0.17 -0.07 16 22 O -0.54 -3.73 9.69 -125.57 -1.22 -4.94 16 23 Si 0.76 -1.75 31.09 68.60 2.13 0.38 16 24 S 0.19 -0.82 20.87 -56.49 -1.18 -2.00 16 25 C -0.20 1.22 11.23 66.72 0.75 1.97 16 26 C -0.10 0.40 9.52 21.21 0.20 0.60 16 27 C -0.14 1.36 7.29 31.12 0.23 1.59 16 28 H 0.06 0.12 8.14 -2.39 -0.02 0.10 16 29 H 0.09 -0.02 8.14 -2.39 -0.02 -0.04 16 30 H 0.06 0.53 5.88 -2.39 -0.01 0.52 16 31 H 0.07 -0.17 8.14 -2.39 -0.02 -0.19 16 32 H 0.10 -0.53 8.14 -2.39 -0.02 -0.55 16 33 H 0.07 -0.21 8.14 -2.39 -0.02 -0.23 16 34 H 0.06 0.57 5.88 -2.39 -0.01 0.56 16 35 H 0.09 0.02 8.14 -2.39 -0.02 0.00 16 36 H 0.06 0.19 8.14 -2.39 -0.02 0.17 16 37 H 0.42 -3.25 8.84 -92.71 -0.82 -4.07 16 38 H 0.07 0.04 8.14 -2.39 -0.02 0.02 16 39 H 0.12 -0.68 7.97 -2.39 -0.02 -0.70 16 40 H 0.12 -1.07 7.43 -2.39 -0.02 -1.09 16 41 H 0.11 -1.38 5.40 -2.39 -0.01 -1.39 16 42 H 0.43 -0.86 8.19 -96.75 -0.79 -1.66 16 43 H 0.15 0.31 7.96 -2.39 -0.02 0.29 16 44 H 0.39 0.54 8.46 -74.05 -0.63 -0.09 16 45 H -0.26 -0.88 7.11 99.48 0.71 -0.17 16 46 H -0.25 0.02 7.11 99.48 0.71 0.72 16 47 H 0.21 -2.48 8.06 -2.91 -0.02 -2.51 16 48 H 0.18 -1.69 4.84 -2.91 -0.01 -1.70 16 49 H 0.14 -2.29 8.08 -2.39 -0.02 -2.31 16 50 H 0.11 -1.11 8.14 -2.39 -0.02 -1.13 16 Total: 0.00 -29.59 425.57 -4.06 -33.65 By element: Atomic # 1 Polarization: -14.02 SS G_CDS: -1.17 Total: -15.19 kcal Atomic # 6 Polarization: 3.50 SS G_CDS: 5.36 Total: 8.85 kcal Atomic # 7 Polarization: 3.09 SS G_CDS: -4.11 Total: -1.01 kcal Atomic # 8 Polarization: -34.18 SS G_CDS: -5.60 Total: -39.78 kcal Atomic # 9 Polarization: 0.06 SS G_CDS: 0.75 Total: 0.81 kcal Atomic # 14 Polarization: -1.75 SS G_CDS: 2.13 Total: 0.38 kcal Atomic # 16 Polarization: 13.72 SS G_CDS: -1.42 Total: 12.30 kcal Total: -29.59 -4.06 -33.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_16499084_14772022.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.684 kcal (2) G-P(sol) polarization free energy of solvation -29.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds