Wall clock time and date at job start Fri Mar 5 2021 22:56:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47290 * 2 1 4 4 C 1.53003 * 109.46932 * 240.00202 * 2 1 3 5 5 O 1.45200 * 109.47212 * 120.00519 * 2 1 3 6 6 C 1.34637 * 117.00110 * 59.99757 * 5 2 1 7 7 O 1.21509 * 119.99916 * 359.97438 * 6 5 2 8 8 N 1.34769 * 120.00049 * 180.02562 * 6 5 2 9 9 C 1.46497 * 120.00274 * 179.97438 * 8 6 5 10 10 H 1.09002 * 112.90477 * 336.24972 * 9 8 6 11 11 C 1.53779 * 113.61581 * 107.50145 * 9 8 6 12 12 C 1.53779 * 87.08402 * 139.98450 * 11 9 8 13 13 F 1.39899 * 113.69427 * 89.12595 * 12 11 9 14 14 C 1.53000 * 113.61731 * 220.02348 * 12 11 9 15 15 N 1.46505 * 109.47018 * 277.49574 * 14 12 11 16 16 S 1.65595 * 120.00181 * 164.99779 * 15 14 12 17 17 O 1.42100 * 106.39934 * 178.54026 * 16 15 14 18 18 O 1.42101 * 106.40180 * 311.45620 * 16 15 14 19 19 C 1.76196 * 107.21787 * 64.99924 * 16 15 14 20 20 C 1.33392 * 122.53864 * 90.02627 * 19 16 15 21 21 S 1.75888 * 109.59324 * 180.02562 * 20 19 16 22 22 C 1.75881 * 90.96880 * 359.97438 * 21 20 19 23 23 C 1.50704 * 125.20397 * 180.02562 * 22 21 20 24 24 O 1.42899 * 109.47007 * 245.02682 * 23 22 21 25 25 Si 1.86303 * 109.46785 * 5.02402 * 23 22 21 26 26 C 1.33385 * 109.59403 * 359.73179 * 22 21 20 27 27 C 1.53784 * 113.61569 * 204.99925 * 9 8 6 28 28 H 1.08999 * 109.46905 * 299.99688 * 1 2 3 29 29 H 1.09008 * 109.47310 * 59.99529 * 1 2 3 30 30 H 1.08999 * 109.47620 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46761 * 180.02562 * 3 2 1 32 32 H 1.08996 * 109.46995 * 300.00257 * 3 2 1 33 33 H 1.08999 * 109.46892 * 60.00304 * 3 2 1 34 34 H 1.08992 * 109.47299 * 300.00124 * 4 2 1 35 35 H 1.09005 * 109.46961 * 60.00559 * 4 2 1 36 36 H 1.08997 * 109.47043 * 180.02562 * 4 2 1 37 37 H 0.97009 * 120.00192 * 359.97438 * 8 6 5 38 38 H 1.09006 * 113.61307 * 25.43652 * 11 9 8 39 39 H 1.09007 * 113.61642 * 254.53409 * 11 9 8 40 40 H 1.09005 * 109.47442 * 37.48787 * 14 12 11 41 41 H 1.08994 * 109.47401 * 157.49461 * 14 12 11 42 42 H 0.97005 * 119.99273 * 344.99879 * 15 14 12 43 43 H 1.08000 * 125.20690 * 359.97438 * 20 19 16 44 44 H 1.08996 * 109.47245 * 125.01955 * 23 22 21 45 45 H 0.96699 * 114.00097 * 59.99926 * 24 23 22 46 46 H 1.48501 * 110.00053 * 58.68251 * 25 23 22 47 47 H 1.48499 * 109.99756 * 179.97438 * 25 23 22 48 48 H 1.08011 * 122.53734 * 180.24116 * 26 22 21 49 49 H 1.09004 * 113.61451 * 105.47149 * 27 9 8 50 50 H 1.08994 * 113.61477 * 334.56451 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 2.0140 -0.6846 1.1855 6 6 1.6522 -1.9724 1.3382 7 8 0.9508 -2.5094 0.5039 8 7 2.0672 -2.6656 2.4169 9 6 1.6731 -4.0667 2.5834 10 1 0.7593 -4.3172 2.0446 11 6 2.8210 -5.0619 2.3456 12 6 2.2721 -5.8596 3.5402 13 9 1.3094 -6.8110 3.1863 14 6 3.3624 -6.4280 4.4508 15 7 3.8668 -7.6816 3.8848 16 16 5.2873 -8.3278 4.4387 17 8 5.4808 -9.5417 3.7258 18 8 6.2352 -7.2691 4.4424 19 6 5.0346 -8.7753 6.1240 20 6 4.5927 -9.9802 6.4879 21 16 4.4649 -10.0570 8.2404 22 6 5.0362 -8.3998 8.3846 23 6 5.2227 -7.6549 9.6813 24 8 4.3069 -6.5593 9.7371 25 14 4.9016 -8.8060 11.1105 26 6 5.2853 -7.9054 7.1711 27 6 1.6736 -4.5370 4.0476 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 3.1300 1.4424 -0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6766 -1.7488 -1.2494 35 1 1.6766 -0.2073 -2.1393 36 1 3.1299 -0.7216 -1.2491 37 1 2.6269 -2.2367 3.0832 38 1 3.8098 -4.6380 2.5210 39 1 2.7492 -5.5926 1.3962 40 1 4.1794 -5.7108 4.5307 41 1 2.9470 -6.6174 5.4405 42 1 3.3687 -8.1330 3.1855 43 1 4.3498 -10.7851 5.8101 44 1 6.2438 -7.2784 9.7404 45 1 3.3772 -6.8209 9.6895 46 1 5.8264 -9.9661 11.0459 47 1 5.0828 -8.0836 12.3951 48 1 5.6509 -6.9008 7.0169 49 1 0.6754 -4.6439 4.4722 50 1 2.3486 -3.9696 4.6882 There are 73 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 73 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_40_16499084_15065232.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 5 2021 22:56:58 Heat of formation + Delta-G solvation = -171.079600 kcal Electronic energy + Delta-G solvation = -36999.073909 eV Core-core repulsion = 31776.464323 eV Total energy + Delta-G solvation = -5222.609585 eV No. of doubly occupied orbitals = 73 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 423.111 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -48.81369 -41.86978 -39.95245 -39.46131 -38.43807 -37.92986 -37.49807 -37.04886 -36.17168 -35.26172 -33.84334 -31.79908 -28.53612 -28.37867 -28.30448 -27.18129 -27.01904 -24.94860 -24.67044 -22.55465 -21.47693 -21.39204 -20.80481 -20.14037 -19.24005 -19.15308 -18.75318 -18.14179 -17.79591 -17.63255 -17.33653 -17.20475 -16.94876 -16.66724 -16.30193 -16.15480 -15.92940 -15.51347 -15.39341 -15.34874 -15.20683 -14.98087 -14.79793 -14.47832 -14.28656 -14.14972 -13.97870 -13.92971 -13.66123 -13.47282 -13.35471 -13.34400 -13.23964 -13.23005 -12.95100 -12.93155 -12.91513 -12.87146 -12.75012 -12.53351 -12.44274 -12.30423 -12.19208 -11.68510 -11.59961 -11.46998 -11.40432 -11.13321 -10.65670 -10.57832 -10.21719 -10.17596 -9.81963 -5.18806 -0.81922 -0.45836 0.35006 0.60777 0.99676 1.13966 1.18637 1.54861 1.70824 1.86286 2.01255 2.65181 3.00878 3.04696 3.10465 3.22167 3.33783 3.46303 3.58018 3.61294 3.66857 3.73333 3.78958 3.92569 3.93617 4.19112 4.22037 4.30786 4.41021 4.42176 4.55428 4.59628 4.60220 4.62773 4.65441 4.71428 4.75547 4.75744 4.82734 4.87073 4.88436 4.91528 4.93385 5.05880 5.07199 5.16756 5.26079 5.29565 5.40925 5.57935 5.89489 6.37998 6.70003 7.32558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.128 3.872 3 C -0.138 4.138 4 C -0.180 4.180 5 O -0.368 6.368 6 C 0.643 3.357 7 O -0.595 6.595 8 N -0.686 5.686 9 C 0.135 3.865 10 H 0.103 0.897 11 C -0.172 4.172 12 C 0.094 3.906 13 F -0.194 7.194 14 C 0.105 3.895 15 N -1.107 6.107 16 S 2.730 3.270 17 O -0.986 6.986 18 O -0.978 6.978 19 C -0.694 4.694 20 C -0.087 4.087 21 S 0.185 5.815 22 C -0.233 4.233 23 C -0.026 4.026 24 O -0.543 6.543 25 Si 0.728 3.272 26 C -0.055 4.055 27 C -0.140 4.140 28 H 0.063 0.937 29 H 0.085 0.915 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.097 0.903 33 H 0.070 0.930 34 H 0.063 0.937 35 H 0.086 0.914 36 H 0.061 0.939 37 H 0.422 0.578 38 H 0.123 0.877 39 H 0.076 0.924 40 H 0.116 0.884 41 H 0.105 0.895 42 H 0.427 0.573 43 H 0.200 0.800 44 H 0.123 0.877 45 H 0.398 0.602 46 H -0.270 1.270 47 H -0.270 1.270 48 H 0.160 0.840 49 H 0.103 0.897 50 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.767 2.076 5.256 6.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.091 3.909 3 C -0.195 4.195 4 C -0.238 4.238 5 O -0.282 6.282 6 C 0.396 3.604 7 O -0.486 6.486 8 N -0.345 5.345 9 C 0.031 3.969 10 H 0.121 0.879 11 C -0.211 4.211 12 C 0.073 3.927 13 F -0.174 7.174 14 C -0.021 4.021 15 N -0.870 5.870 16 S 2.819 3.181 17 O -0.976 6.976 18 O -0.967 6.967 19 C -0.795 4.795 20 C -0.226 4.226 21 S 0.449 5.551 22 C -0.351 4.351 23 C -0.139 4.139 24 O -0.351 6.351 25 Si 0.631 3.369 26 C -0.084 4.084 27 C -0.179 4.179 28 H 0.082 0.918 29 H 0.104 0.896 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.116 0.884 33 H 0.090 0.910 34 H 0.081 0.919 35 H 0.105 0.895 36 H 0.080 0.920 37 H 0.260 0.740 38 H 0.141 0.859 39 H 0.095 0.905 40 H 0.134 0.866 41 H 0.123 0.877 42 H 0.264 0.736 43 H 0.217 0.783 44 H 0.140 0.860 45 H 0.248 0.752 46 H -0.196 1.196 47 H -0.195 1.195 48 H 0.178 0.822 49 H 0.122 0.878 50 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -2.856 0.716 6.281 6.937 hybrid contribution 0.378 0.778 -1.172 1.456 sum -2.478 1.493 5.109 5.871 Atomic orbital electron populations 1.22473 0.94017 1.03677 1.03551 1.22345 0.94463 0.92580 0.81488 1.21890 1.02458 0.90853 1.04267 1.22475 1.01631 1.02224 0.97439 1.86313 1.71480 1.23251 1.47187 1.18440 0.78535 0.80744 0.82636 1.90915 1.42297 1.71076 1.44310 1.44617 1.54895 1.11892 1.23134 1.22498 0.98425 0.77631 0.98336 0.87925 1.24305 1.00983 0.96915 0.98922 1.21710 0.87398 0.86686 0.96898 1.92873 1.65162 1.66344 1.93054 1.22018 0.97186 0.85538 0.97356 1.55196 1.44595 1.34648 1.52534 1.00675 0.72416 0.72280 0.72730 1.93577 1.84944 1.47267 1.71861 1.93565 1.59382 1.56843 1.86957 1.29802 1.21204 1.03172 1.25315 1.26222 0.96306 0.99366 1.00712 1.84317 1.60177 1.09768 1.00830 1.25176 1.11076 0.98791 1.00089 1.24455 0.96949 0.94327 0.98191 1.86511 1.20820 1.31553 1.96208 0.94333 0.89136 0.76935 0.76523 1.19705 0.98348 1.00770 0.89566 1.24028 1.05125 0.93038 0.95697 0.91789 0.89568 0.91821 0.91186 0.88418 0.91049 0.91852 0.89549 0.91960 0.74037 0.85912 0.90514 0.86641 0.87738 0.73555 0.78287 0.86024 0.75177 1.19577 1.19539 0.82248 0.87843 0.83983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.51 8.37 71.98 0.60 0.10 16 2 C 0.13 0.32 1.13 -10.79 -0.01 0.31 16 3 C -0.14 0.34 8.85 71.98 0.64 0.98 16 4 C -0.18 -0.58 8.37 71.98 0.60 0.02 16 5 O -0.37 -1.62 9.94 -55.46 -0.55 -2.17 16 6 C 0.64 3.49 8.06 129.79 1.05 4.54 16 7 O -0.60 -6.83 11.48 19.81 0.23 -6.60 16 8 N -0.69 1.51 5.36 -567.63 -3.04 -1.54 16 9 C 0.14 -0.44 4.22 45.52 0.19 -0.25 16 10 H 0.10 0.21 7.47 -2.39 -0.02 0.19 16 11 C -0.17 0.75 7.33 31.12 0.23 0.98 16 12 C 0.09 -0.61 1.73 -10.27 -0.02 -0.63 16 13 F -0.19 0.22 16.64 44.97 0.75 0.97 16 14 C 0.11 -0.88 5.91 86.38 0.51 -0.37 16 15 N -1.11 5.20 5.96 -187.48 -1.12 4.08 16 16 S 2.73 2.53 5.80 -56.49 -0.33 2.20 16 17 O -0.99 -7.36 17.64 -128.00 -2.26 -9.62 16 18 O -0.98 -6.24 17.10 -128.00 -2.19 -8.43 16 19 C -0.69 1.02 5.86 21.22 0.12 1.14 16 20 C -0.09 0.28 10.70 66.72 0.71 1.00 16 21 S 0.19 -0.90 20.60 -56.49 -1.16 -2.06 16 22 C -0.23 0.77 5.70 24.59 0.14 0.91 16 23 C -0.03 0.11 2.96 71.24 0.21 0.32 16 24 O -0.54 2.71 12.88 -148.98 -1.92 0.80 16 25 Si 0.73 -3.28 30.98 68.60 2.13 -1.15 16 26 C -0.06 0.10 9.59 21.21 0.20 0.31 16 27 C -0.14 1.38 7.29 31.12 0.23 1.60 16 28 H 0.06 0.12 8.14 -2.39 -0.02 0.10 16 29 H 0.09 -0.04 8.14 -2.38 -0.02 -0.05 16 30 H 0.06 0.52 5.88 -2.39 -0.01 0.51 16 31 H 0.07 -0.18 8.14 -2.39 -0.02 -0.20 16 32 H 0.10 -0.54 8.14 -2.39 -0.02 -0.56 16 33 H 0.07 -0.21 8.14 -2.39 -0.02 -0.23 16 34 H 0.06 0.55 5.88 -2.39 -0.01 0.53 16 35 H 0.09 -0.01 8.14 -2.38 -0.02 -0.02 16 36 H 0.06 0.16 8.14 -2.39 -0.02 0.14 16 37 H 0.42 -3.31 8.84 -92.70 -0.82 -4.13 16 38 H 0.12 -0.85 7.96 -2.38 -0.02 -0.87 16 39 H 0.08 -0.07 8.14 -2.38 -0.02 -0.09 16 40 H 0.12 -1.22 7.55 -2.38 -0.02 -1.24 16 41 H 0.10 -1.29 8.14 -2.39 -0.02 -1.31 16 42 H 0.43 -2.32 8.19 -96.74 -0.79 -3.11 16 43 H 0.20 -1.33 8.00 -2.91 -0.02 -1.35 16 44 H 0.12 -0.40 7.96 -2.39 -0.02 -0.42 16 45 H 0.40 -5.30 8.70 -74.06 -0.64 -5.94 16 46 H -0.27 -0.17 7.11 99.48 0.71 0.54 16 47 H -0.27 -0.52 7.11 99.48 0.71 0.19 16 48 H 0.16 -0.46 7.96 -2.91 -0.02 -0.48 16 49 H 0.10 -1.03 8.14 -2.39 -0.02 -1.05 16 50 H 0.14 -2.21 8.08 -2.39 -0.02 -2.23 16 Total: 0.00 -28.41 438.55 -5.26 -33.67 By element: Atomic # 1 Polarization: -19.89 SS G_CDS: -1.20 Total: -21.09 kcal Atomic # 6 Polarization: 5.55 SS G_CDS: 5.41 Total: 10.95 kcal Atomic # 7 Polarization: 6.70 SS G_CDS: -4.16 Total: 2.54 kcal Atomic # 8 Polarization: -19.34 SS G_CDS: -6.69 Total: -26.03 kcal Atomic # 9 Polarization: 0.22 SS G_CDS: 0.75 Total: 0.97 kcal Atomic # 14 Polarization: -3.28 SS G_CDS: 2.13 Total: -1.15 kcal Atomic # 16 Polarization: 1.63 SS G_CDS: -1.49 Total: 0.13 kcal Total: -28.41 -5.26 -33.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_16499084_15065232.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.414 kcal (2) G-P(sol) polarization free energy of solvation -28.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds