Wall clock time and date at job start Fri Mar 5 2021 22:57:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47115 * 2 1 4 4 C 1.53001 * 109.47336 * 239.99836 * 2 1 3 5 5 O 1.45198 * 109.47285 * 119.99837 * 2 1 3 6 6 C 1.34637 * 117.00189 * 59.99765 * 5 2 1 7 7 O 1.21509 * 120.00148 * 0.02562 * 6 5 2 8 8 N 1.34780 * 120.00237 * 180.02562 * 6 5 2 9 9 C 1.46496 * 120.00241 * 180.02562 * 8 6 5 10 10 H 1.09008 * 112.84660 * 336.19559 * 9 8 6 11 11 C 1.53777 * 113.61664 * 107.50031 * 9 8 6 12 12 C 1.53785 * 87.08103 * 139.98477 * 11 9 8 13 13 F 1.39893 * 113.69069 * 89.12634 * 12 11 9 14 14 C 1.53000 * 113.61138 * 220.02240 * 12 11 9 15 15 N 1.46504 * 109.47224 * 277.49402 * 14 12 11 16 16 S 1.65600 * 119.99957 * 162.55478 * 15 14 12 17 17 O 1.42091 * 106.40207 * 310.32611 * 16 15 14 18 18 O 1.42107 * 106.39845 * 177.40776 * 16 15 14 19 19 C 1.76197 * 107.21731 * 63.87093 * 16 15 14 20 20 C 1.38206 * 120.00157 * 62.96943 * 19 16 15 21 21 C 1.50702 * 120.00134 * 359.97438 * 20 19 16 22 22 O 1.42899 * 109.47152 * 80.09010 * 21 20 19 23 23 Si 1.86299 * 109.47156 * 200.09442 * 21 20 19 24 24 C 1.38261 * 120.00166 * 180.02562 * 20 19 16 25 25 C 1.38209 * 119.99502 * 359.97322 * 24 20 19 26 26 C 1.38255 * 120.00814 * 359.97438 * 25 24 20 27 27 C 1.38216 * 119.99281 * 359.81055 * 26 25 24 28 28 C 1.53775 * 113.61476 * 205.00114 * 9 8 6 29 29 H 1.08999 * 109.47357 * 300.00103 * 1 2 3 30 30 H 1.08993 * 109.47404 * 60.00065 * 1 2 3 31 31 H 1.09001 * 109.47233 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47310 * 180.02562 * 3 2 1 33 33 H 1.09005 * 109.46373 * 299.99849 * 3 2 1 34 34 H 1.08992 * 109.47471 * 59.99674 * 3 2 1 35 35 H 1.09001 * 109.46850 * 300.00101 * 4 2 1 36 36 H 1.09007 * 109.46937 * 59.99681 * 4 2 1 37 37 H 1.08991 * 109.47211 * 180.02562 * 4 2 1 38 38 H 0.97005 * 119.99957 * 0.02562 * 8 6 5 39 39 H 1.09000 * 113.61581 * 25.43615 * 11 9 8 40 40 H 1.09003 * 113.61722 * 254.53444 * 11 9 8 41 41 H 1.09001 * 109.46935 * 157.49476 * 14 12 11 42 42 H 1.09001 * 109.47120 * 37.49642 * 14 12 11 43 43 H 0.96995 * 119.99550 * 342.56191 * 15 14 12 44 44 H 1.09007 * 109.46734 * 320.09042 * 21 20 19 45 45 H 0.96698 * 114.00049 * 310.95283 * 22 21 20 46 46 H 1.48506 * 109.99895 * 298.67916 * 23 21 20 47 47 H 1.48497 * 110.00274 * 59.99783 * 23 21 20 48 48 H 1.07998 * 119.99804 * 179.97438 * 24 20 19 49 49 H 1.08007 * 119.99991 * 179.97438 * 25 24 20 50 50 H 1.07998 * 120.00455 * 179.97438 * 26 25 24 51 51 H 1.08001 * 119.99710 * 180.23215 * 27 26 25 52 52 H 1.09005 * 113.61589 * 105.46680 * 28 9 8 53 53 H 1.08994 * 113.69395 * 334.57725 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6844 1.1855 6 6 1.6522 -1.9722 1.3384 7 8 0.9516 -2.5097 0.5038 8 7 2.0672 -2.6653 2.4173 9 6 1.6741 -4.0667 2.5834 10 1 0.7600 -4.3166 2.0445 11 6 2.8228 -5.0611 2.3459 12 6 2.2738 -5.8594 3.5402 13 9 1.3120 -6.8114 3.1855 14 6 3.3642 -6.4272 4.4510 15 7 3.8697 -7.6803 3.8851 16 16 5.3203 -8.2941 4.3964 17 8 6.2551 -7.2263 4.3254 18 8 5.4966 -9.5282 3.7143 19 6 5.1460 -8.6901 6.1044 20 6 4.2387 -9.6542 6.5012 21 6 3.3979 -10.3663 5.4730 22 8 4.1704 -11.3997 4.8588 23 14 1.9061 -11.1146 6.3010 24 6 4.1015 -9.9646 7.8415 25 6 4.8723 -9.3112 8.7845 26 6 5.7808 -8.3475 8.3876 27 6 5.9210 -8.0404 7.0473 28 6 1.6742 -4.5372 4.0474 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 3.1299 1.4426 -0.0005 33 1 1.6766 1.9563 -0.8901 34 1 1.6766 1.9564 0.8899 35 1 1.6766 -1.7489 -1.2492 36 1 1.6766 -0.2075 -2.1393 37 1 3.1299 -0.7217 -1.2490 38 1 2.6263 -2.2362 3.0839 39 1 3.8112 -4.6366 2.5218 40 1 2.7518 -5.5917 1.3963 41 1 2.9485 -6.6170 5.4406 42 1 4.1805 -5.7094 4.5315 43 1 3.3548 -8.1505 3.2108 44 1 3.0733 -9.6550 4.7134 45 1 5.0418 -11.1113 4.5545 46 1 2.3347 -12.1095 7.3168 47 1 1.0944 -10.0500 6.9435 48 1 3.3922 -10.7177 8.1515 49 1 4.7649 -9.5533 9.8315 50 1 6.3827 -7.8367 9.1245 51 1 6.6333 -7.2903 6.7368 52 1 0.6758 -4.6449 4.4715 53 1 2.3480 -3.9702 4.6896 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_40_16499084_2726874.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 5 2021 22:57:08 Heat of formation + Delta-G solvation = -169.515154 kcal Electronic energy + Delta-G solvation = -39608.455935 eV Core-core repulsion = 34296.761943 eV Total energy + Delta-G solvation = -5311.693992 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 417.155 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -48.84953 -41.88451 -40.86325 -39.98607 -38.86383 -37.97730 -37.42817 -37.17062 -36.29082 -35.29043 -33.89112 -32.89173 -32.57000 -28.65971 -28.38656 -28.31378 -27.06654 -27.00921 -24.73613 -24.57183 -22.96997 -22.59927 -21.48969 -21.01320 -20.56179 -19.53948 -19.25651 -19.00478 -18.40357 -17.71597 -17.61208 -17.24606 -17.23691 -16.93605 -16.89647 -16.58961 -16.22999 -16.01619 -15.95792 -15.61855 -15.48042 -15.36007 -15.29135 -15.09315 -14.90461 -14.48991 -14.19746 -14.06019 -13.82681 -13.72402 -13.67905 -13.57885 -13.45197 -13.36339 -13.35649 -13.26057 -13.03624 -12.96248 -12.93981 -12.88128 -12.77785 -12.45663 -12.31584 -12.29019 -11.99835 -11.70390 -11.60933 -11.53251 -11.41487 -11.15363 -11.11663 -10.64855 -10.58857 -10.23823 -10.21067 -4.88088 -0.93311 -0.46466 -0.02724 1.12106 1.22040 1.55980 1.66332 1.70469 1.82763 2.21189 2.43618 2.95813 2.99274 3.04788 3.10880 3.23088 3.29347 3.53674 3.55393 3.56994 3.72472 3.75228 3.78118 3.88327 3.92799 3.97887 4.09539 4.14697 4.21455 4.26157 4.35956 4.42959 4.51839 4.54251 4.58165 4.59601 4.62051 4.64108 4.72818 4.74975 4.81022 4.82734 4.86036 4.86352 4.89712 5.02488 5.03126 5.14467 5.14871 5.25393 5.28083 5.38554 5.56632 5.59794 5.75962 6.36224 6.59817 7.31079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.128 3.872 3 C -0.138 4.138 4 C -0.181 4.181 5 O -0.368 6.368 6 C 0.643 3.357 7 O -0.594 6.594 8 N -0.686 5.686 9 C 0.136 3.864 10 H 0.104 0.896 11 C -0.170 4.170 12 C 0.092 3.908 13 F -0.192 7.192 14 C 0.104 3.896 15 N -1.110 6.110 16 S 2.713 3.287 17 O -0.969 6.969 18 O -0.975 6.975 19 C -0.678 4.678 20 C -0.027 4.027 21 C -0.136 4.136 22 O -0.546 6.546 23 Si 0.810 3.190 24 C -0.159 4.159 25 C -0.054 4.054 26 C -0.132 4.132 27 C -0.024 4.024 28 C -0.142 4.142 29 H 0.063 0.937 30 H 0.086 0.914 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.097 0.903 34 H 0.070 0.930 35 H 0.063 0.937 36 H 0.086 0.914 37 H 0.062 0.938 38 H 0.421 0.579 39 H 0.124 0.876 40 H 0.078 0.922 41 H 0.099 0.901 42 H 0.121 0.879 43 H 0.430 0.570 44 H 0.086 0.914 45 H 0.379 0.621 46 H -0.278 1.278 47 H -0.251 1.251 48 H 0.133 0.867 49 H 0.161 0.839 50 H 0.166 0.834 51 H 0.160 0.840 52 H 0.102 0.898 53 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.127 5.594 5.759 8.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.092 3.908 3 C -0.195 4.195 4 C -0.238 4.238 5 O -0.283 6.283 6 C 0.397 3.603 7 O -0.485 6.485 8 N -0.346 5.346 9 C 0.032 3.968 10 H 0.122 0.878 11 C -0.209 4.209 12 C 0.072 3.928 13 F -0.172 7.172 14 C -0.022 4.022 15 N -0.874 5.874 16 S 2.804 3.196 17 O -0.959 6.959 18 O -0.965 6.965 19 C -0.766 4.766 20 C -0.028 4.028 21 C -0.243 4.243 22 O -0.360 6.360 23 Si 0.708 3.292 24 C -0.177 4.177 25 C -0.072 4.072 26 C -0.151 4.151 27 C -0.043 4.043 28 C -0.181 4.181 29 H 0.082 0.918 30 H 0.104 0.896 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.116 0.884 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.105 0.895 37 H 0.081 0.919 38 H 0.260 0.740 39 H 0.142 0.858 40 H 0.097 0.903 41 H 0.117 0.883 42 H 0.139 0.861 43 H 0.268 0.732 44 H 0.104 0.896 45 H 0.236 0.764 46 H -0.204 1.204 47 H -0.175 1.175 48 H 0.151 0.849 49 H 0.179 0.821 50 H 0.184 0.816 51 H 0.178 0.822 52 H 0.121 0.879 53 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -1.552 4.948 5.760 7.751 hybrid contribution 0.992 0.370 0.381 1.125 sum -0.560 5.319 6.141 8.143 Atomic orbital electron populations 1.22474 0.94038 1.03683 1.03554 1.22342 0.94443 0.92578 0.81476 1.21892 1.02476 0.90848 1.04269 1.22478 1.01648 1.02238 0.97430 1.86311 1.71476 1.23253 1.47211 1.18438 0.78529 0.80746 0.82630 1.90918 1.42285 1.71043 1.44264 1.44609 1.54973 1.11843 1.23148 1.22482 0.98499 0.77669 0.98132 0.87819 1.24294 1.00976 0.96791 0.98855 1.21711 0.87387 0.86711 0.97007 1.92878 1.65114 1.66222 1.93008 1.22043 0.97556 0.85417 0.97184 1.55270 1.42210 1.34695 1.55221 1.01213 0.72472 0.72781 0.73149 1.93566 1.60021 1.55909 1.86398 1.93350 1.85105 1.45049 1.73000 1.30695 1.09981 1.10339 1.25593 1.20124 0.93573 0.93105 0.96018 1.26093 1.04089 0.96393 0.97756 1.86641 1.34453 1.35832 1.79112 0.91888 0.77532 0.80477 0.79306 1.21437 1.01714 1.01603 0.92972 1.21882 0.91878 0.92378 1.01091 1.21769 0.98899 0.98070 0.96344 1.21344 0.94426 0.95463 0.93091 1.24038 1.05087 0.93058 0.95892 0.91812 0.89552 0.91816 0.91157 0.88415 0.91058 0.91832 0.89545 0.91931 0.74049 0.85810 0.90340 0.88330 0.86125 0.73235 0.89586 0.76445 1.20433 1.17544 0.84931 0.82146 0.81608 0.82227 0.87948 0.83981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.47 8.37 71.98 0.60 0.13 16 2 C 0.13 0.28 1.13 -10.79 -0.01 0.27 16 3 C -0.14 0.38 8.85 71.98 0.64 1.02 16 4 C -0.18 -0.53 8.37 71.98 0.60 0.07 16 5 O -0.37 -1.50 9.94 -55.47 -0.55 -2.05 16 6 C 0.64 3.26 8.06 129.79 1.05 4.31 16 7 O -0.59 -6.62 11.48 19.81 0.23 -6.39 16 8 N -0.69 1.78 5.36 -567.62 -3.04 -1.27 16 9 C 0.14 -0.49 4.22 45.52 0.19 -0.30 16 10 H 0.10 0.18 7.46 -2.38 -0.02 0.16 16 11 C -0.17 0.81 7.33 31.12 0.23 1.04 16 12 C 0.09 -0.60 1.75 -10.26 -0.02 -0.62 16 13 F -0.19 0.25 16.62 44.97 0.75 1.00 16 14 C 0.10 -0.84 5.92 86.38 0.51 -0.33 16 15 N -1.11 4.37 4.61 -187.48 -0.86 3.50 16 16 S 2.71 3.81 4.95 -56.49 -0.28 3.53 16 17 O -0.97 -4.86 16.45 -128.00 -2.11 -6.97 16 18 O -0.97 -6.62 13.90 -119.72 -1.66 -8.29 16 19 C -0.68 -0.66 5.84 22.27 0.13 -0.53 16 20 C -0.03 -0.07 5.10 -19.87 -0.10 -0.17 16 21 C -0.14 -0.40 1.92 71.24 0.14 -0.26 16 22 O -0.55 -4.42 12.52 -129.05 -1.62 -6.03 16 23 Si 0.81 -0.03 30.61 68.60 2.10 2.07 16 24 C -0.16 -0.23 8.65 22.27 0.19 -0.04 16 25 C -0.05 0.15 10.05 22.27 0.22 0.38 16 26 C -0.13 0.54 10.05 22.27 0.22 0.77 16 27 C -0.02 0.04 9.55 22.27 0.21 0.25 16 28 C -0.14 1.39 7.29 31.12 0.23 1.62 16 29 H 0.06 0.11 8.14 -2.39 -0.02 0.09 16 30 H 0.09 -0.05 8.14 -2.39 -0.02 -0.07 16 31 H 0.06 0.51 5.88 -2.39 -0.01 0.49 16 32 H 0.07 -0.21 8.14 -2.39 -0.02 -0.23 16 33 H 0.10 -0.56 8.14 -2.38 -0.02 -0.58 16 34 H 0.07 -0.23 8.14 -2.39 -0.02 -0.25 16 35 H 0.06 0.53 5.88 -2.39 -0.01 0.52 16 36 H 0.09 -0.03 8.14 -2.38 -0.02 -0.05 16 37 H 0.06 0.14 8.14 -2.39 -0.02 0.12 16 38 H 0.42 -3.52 8.84 -92.70 -0.82 -4.34 16 39 H 0.12 -0.93 7.96 -2.39 -0.02 -0.95 16 40 H 0.08 -0.11 8.14 -2.39 -0.02 -0.13 16 41 H 0.10 -1.09 8.14 -2.39 -0.02 -1.11 16 42 H 0.12 -1.34 7.53 -2.39 -0.02 -1.36 16 43 H 0.43 -2.10 7.82 -96.75 -0.76 -2.86 16 44 H 0.09 -0.08 5.46 -2.38 -0.01 -0.10 16 45 H 0.38 3.22 5.56 -74.06 -0.41 2.81 16 46 H -0.28 -1.27 6.66 99.48 0.66 -0.60 16 47 H -0.25 -0.14 7.11 99.48 0.71 0.57 16 48 H 0.13 0.13 5.03 -2.91 -0.01 0.12 16 49 H 0.16 -1.33 8.06 -2.91 -0.02 -1.35 16 50 H 0.17 -1.64 8.06 -2.91 -0.02 -1.67 16 51 H 0.16 -0.71 7.34 -2.91 -0.02 -0.73 16 52 H 0.10 -0.99 8.14 -2.38 -0.02 -1.01 16 53 H 0.14 -2.25 8.08 -2.39 -0.02 -2.27 16 Total: 0.00 -25.03 433.04 -3.02 -28.05 By element: Atomic # 1 Polarization: -13.76 SS G_CDS: -1.01 Total: -14.77 kcal Atomic # 6 Polarization: 2.58 SS G_CDS: 5.03 Total: 7.61 kcal Atomic # 7 Polarization: 6.14 SS G_CDS: -3.91 Total: 2.24 kcal Atomic # 8 Polarization: -24.02 SS G_CDS: -5.71 Total: -29.73 kcal Atomic # 9 Polarization: 0.25 SS G_CDS: 0.75 Total: 1.00 kcal Atomic # 14 Polarization: -0.03 SS G_CDS: 2.10 Total: 2.07 kcal Atomic # 16 Polarization: 3.81 SS G_CDS: -0.28 Total: 3.53 kcal Total: -25.03 -3.02 -28.05 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_16499084_2726874.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.466 kcal (2) G-P(sol) polarization free energy of solvation -25.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds