Wall clock time and date at job start Fri Mar 5 2021 23:13:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86300 * 109.47399 * 2 1 4 4 C 1.50702 * 109.47558 * 239.99479 * 2 1 3 5 5 C 1.38227 * 120.00094 * 300.00236 * 4 2 1 6 6 C 1.38237 * 120.00085 * 179.97438 * 5 4 2 7 7 C 1.38237 * 119.99608 * 359.95440 * 6 5 4 8 8 S 1.76203 * 119.99729 * 180.02562 * 7 6 5 9 9 O 1.42104 * 106.40146 * 336.46247 * 8 7 6 10 10 O 1.42095 * 106.40229 * 203.54504 * 8 7 6 11 11 N 1.65602 * 107.21635 * 90.00082 * 8 7 6 12 12 C 1.46498 * 119.99612 * 65.28001 * 11 8 7 13 13 H 1.08999 * 112.85033 * 344.38848 * 12 11 8 14 14 C 1.53783 * 113.61570 * 115.58430 * 12 11 8 15 15 C 1.54049 * 86.98576 * 89.16088 * 14 12 11 16 16 O 1.42905 * 113.68880 * 270.87690 * 15 14 12 17 17 C 1.52997 * 113.62326 * 139.97752 * 15 14 12 18 18 F 1.39898 * 109.47208 * 322.50874 * 17 15 14 19 19 F 1.39900 * 109.47152 * 82.50547 * 17 15 14 20 20 F 1.39892 * 109.47453 * 202.50479 * 17 15 14 21 21 C 1.53780 * 87.07959 * 25.43134 * 15 14 12 22 22 C 1.38232 * 120.00116 * 0.27904 * 7 6 5 23 23 C 1.38232 * 119.99531 * 119.97896 * 4 2 1 24 24 H 0.96700 * 113.99582 * 60.00454 * 1 2 3 25 25 H 1.09000 * 109.46931 * 119.99766 * 2 1 3 26 26 H 1.48503 * 109.99919 * 59.99329 * 3 2 1 27 27 H 1.48495 * 110.00468 * 181.31393 * 3 2 1 28 28 H 1.08004 * 120.00015 * 359.97438 * 5 4 2 29 29 H 1.07999 * 119.99949 * 179.97438 * 6 5 4 30 30 H 0.97001 * 119.99942 * 244.99525 * 11 8 7 31 31 H 1.09000 * 113.61251 * 203.66457 * 14 12 11 32 32 H 1.09002 * 113.61625 * 334.56854 * 14 12 11 33 33 H 0.96705 * 113.99755 * 277.52863 * 16 15 14 34 34 H 1.09002 * 113.61861 * 220.02462 * 21 15 14 35 35 H 1.08994 * 113.61778 * 89.11732 * 21 15 14 36 36 H 1.08001 * 119.99701 * 179.72178 * 22 7 6 37 37 H 1.08003 * 120.00660 * 0.02562 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9314 -0.7105 -1.2304 5 6 1.5975 -2.0339 -1.4491 6 6 2.0580 -2.6855 -2.5779 7 6 2.8516 -2.0132 -3.4886 8 16 3.4379 -2.8435 -4.9278 9 8 3.4279 -4.2314 -4.6225 10 8 4.6047 -2.1480 -5.3450 11 7 2.3086 -2.6184 -6.1179 12 6 2.0547 -1.2741 -6.6418 13 1 2.4557 -0.4878 -6.0022 14 6 2.4260 -1.1107 -8.1252 15 6 0.9909 -1.5664 -8.4506 16 8 0.8555 -2.9823 -8.5884 17 6 0.3488 -0.7931 -9.6041 18 9 0.7361 0.5496 -9.5381 19 9 0.7672 -1.3397 -10.8220 20 9 -1.0439 -0.8820 -9.5070 21 6 0.5933 -1.0420 -7.0607 22 6 3.1894 -0.6912 -3.2674 23 6 2.7258 -0.0386 -2.1404 24 1 -0.3932 0.4417 -0.7651 25 1 1.7923 -0.5138 0.8900 26 1 1.5614 2.4679 1.2084 27 1 3.5346 1.7703 -0.0320 28 1 0.9769 -2.5589 -0.7379 29 1 1.7974 -3.7196 -2.7486 30 1 1.8182 -3.3772 -6.4709 31 1 2.6325 -0.0797 -8.4126 32 1 3.1938 -1.8071 -8.4624 33 1 1.1041 -3.3182 -9.4605 34 1 -0.1175 -1.6830 -6.5391 35 1 0.2997 0.0076 -7.0576 36 1 3.8132 -0.1674 -3.9766 37 1 2.9867 0.9955 -1.9696 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV m_40_17047582_13421422.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 5 2021 23:13:13 Heat of formation + Delta-G solvation = -237.100804 kcal Electronic energy + Delta-G solvation = -30244.004049 eV Core-core repulsion = 25280.493710 eV Total energy + Delta-G solvation = -4963.510339 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 354.063 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -51.27016 -48.81865 -48.72524 -41.27839 -40.80533 -38.30956 -37.84539 -36.92394 -36.80569 -33.79539 -33.12560 -32.32198 -28.69799 -27.40468 -27.31626 -24.40366 -24.10101 -23.10389 -21.51181 -20.89229 -20.12363 -19.57174 -19.52109 -19.22729 -18.65624 -18.22803 -17.51688 -17.21091 -16.90552 -16.59430 -16.28621 -16.05932 -15.92241 -15.64724 -15.55473 -15.44885 -15.18236 -15.02419 -14.95546 -14.92436 -14.86531 -14.57674 -14.36041 -14.28081 -14.02863 -13.93579 -13.29018 -13.17742 -13.14694 -13.04234 -12.81902 -12.74875 -12.48405 -12.10851 -12.02184 -11.88713 -11.37621 -10.88542 -10.72852 -10.42699 -10.26692 -5.21697 -0.81023 -0.45366 0.06793 1.07395 1.42414 1.46789 1.73043 1.81922 2.19785 2.25766 2.47373 2.50758 2.66992 2.69500 3.14221 3.19427 3.21684 3.29613 3.34386 3.39448 3.61971 3.66335 3.76950 3.95482 4.04012 4.19959 4.20813 4.24018 4.31973 4.47051 4.47415 4.59812 4.69207 4.81502 4.85313 4.88173 5.12851 5.57330 5.79421 5.97418 6.33757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.535 6.535 2 C -0.078 4.078 3 Si 0.691 3.309 4 C -0.062 4.062 5 C -0.113 4.113 6 C -0.015 4.015 7 C -0.676 4.676 8 S 2.695 3.305 9 O -0.951 6.951 10 O -0.950 6.950 11 N -1.094 6.094 12 C 0.143 3.857 13 H 0.116 0.884 14 C -0.170 4.170 15 C 0.061 3.939 16 O -0.512 6.512 17 C 0.434 3.566 18 F -0.174 7.174 19 F -0.182 7.182 20 F -0.175 7.175 21 C -0.126 4.126 22 C -0.018 4.018 23 C -0.138 4.138 24 H 0.381 0.619 25 H 0.120 0.880 26 H -0.251 1.251 27 H -0.255 1.255 28 H 0.138 0.862 29 H 0.144 0.856 30 H 0.428 0.572 31 H 0.119 0.881 32 H 0.102 0.898 33 H 0.395 0.605 34 H 0.105 0.895 35 H 0.122 0.878 36 H 0.146 0.854 37 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.374 3.760 -1.098 4.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.340 6.340 2 C -0.189 4.189 3 Si 0.593 3.407 4 C -0.063 4.063 5 C -0.132 4.132 6 C -0.034 4.034 7 C -0.762 4.762 8 S 2.784 3.216 9 O -0.942 6.942 10 O -0.940 6.940 11 N -0.854 5.854 12 C 0.034 3.966 13 H 0.134 0.866 14 C -0.210 4.210 15 C 0.018 3.982 16 O -0.319 6.319 17 C 0.379 3.621 18 F -0.155 7.155 19 F -0.164 7.164 20 F -0.156 7.156 21 C -0.165 4.165 22 C -0.037 4.037 23 C -0.157 4.157 24 H 0.228 0.772 25 H 0.138 0.862 26 H -0.176 1.176 27 H -0.180 1.180 28 H 0.156 0.844 29 H 0.162 0.838 30 H 0.265 0.735 31 H 0.137 0.863 32 H 0.120 0.880 33 H 0.246 0.754 34 H 0.123 0.877 35 H 0.140 0.860 36 H 0.164 0.836 37 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -1.141 3.773 0.472 3.970 hybrid contribution -0.620 -0.521 -0.472 0.937 sum -1.761 3.253 0.000 3.699 Atomic orbital electron populations 1.86542 1.16542 1.81664 1.49285 1.25239 0.85668 1.10623 0.97352 0.94728 0.81144 0.77321 0.87541 1.20757 0.94918 0.94971 0.95651 1.21198 1.00033 0.94042 0.97917 1.21013 0.90988 0.99519 0.91918 1.30997 1.15514 1.07381 1.22334 1.01984 0.73236 0.73491 0.72913 1.93632 1.86081 1.30258 1.84181 1.93622 1.44138 1.75314 1.80877 1.55430 1.61157 1.14684 1.54099 1.21335 0.95937 0.84166 0.95162 0.86602 1.24319 0.94852 1.04890 0.96895 1.23678 0.98199 0.83383 0.92989 1.86542 1.89688 1.16220 1.39488 1.21234 0.77516 0.78981 0.84349 1.93191 1.90754 1.35254 1.96325 1.93195 1.89920 1.85364 1.47872 1.93231 1.30268 1.95967 1.96135 1.23584 0.98323 1.03519 0.91090 1.20922 0.94134 0.91946 0.96719 1.21171 0.99367 1.00145 0.94989 0.77198 0.86239 1.17583 1.17981 0.84449 0.83841 0.73462 0.86271 0.87972 0.75431 0.87679 0.86021 0.83648 0.84515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.78 12.77 -35.23 -0.45 0.33 16 2 C -0.08 0.14 2.82 36.01 0.10 0.24 16 3 Si 0.69 -1.74 29.79 -169.99 -5.06 -6.81 16 4 C -0.06 0.09 5.39 -104.63 -0.56 -0.48 16 5 C -0.11 0.09 9.61 -39.59 -0.38 -0.29 16 6 C -0.02 0.01 9.52 -39.58 -0.38 -0.37 16 7 C -0.68 0.47 5.95 -39.58 -0.24 0.23 16 8 S 2.69 0.33 5.69 -107.50 -0.61 -0.28 16 9 O -0.95 -3.24 17.28 -57.17 -0.99 -4.22 16 10 O -0.95 -2.48 17.03 -57.17 -0.97 -3.45 16 11 N -1.09 2.83 5.68 -4.20 -0.02 2.81 16 12 C 0.14 -0.56 4.42 -67.12 -0.30 -0.85 16 13 H 0.12 -0.67 7.79 -51.93 -0.40 -1.08 16 14 C -0.17 0.62 7.17 -25.78 -0.18 0.44 16 15 C 0.06 -0.19 1.36 -89.67 -0.12 -0.31 16 16 O -0.51 1.55 12.02 -35.23 -0.42 1.13 16 17 C 0.43 -0.57 2.85 37.16 0.11 -0.47 16 18 F -0.17 0.19 15.76 2.25 0.04 0.23 16 19 F -0.18 0.09 16.65 2.25 0.04 0.13 16 20 F -0.17 -0.06 17.18 2.25 0.04 -0.02 16 21 C -0.13 0.54 7.04 -25.92 -0.18 0.36 16 22 C -0.02 0.03 9.25 -39.58 -0.37 -0.34 16 23 C -0.14 0.29 8.67 -39.58 -0.34 -0.06 16 24 H 0.38 -2.07 8.70 45.56 0.40 -1.68 16 25 H 0.12 -0.15 7.96 -51.93 -0.41 -0.57 16 26 H -0.25 -0.24 7.11 56.52 0.40 0.17 16 27 H -0.26 0.03 7.11 56.52 0.40 0.43 16 28 H 0.14 -0.21 8.06 -52.48 -0.42 -0.63 16 29 H 0.14 -0.22 7.62 -52.49 -0.40 -0.62 16 30 H 0.43 -1.27 7.56 -34.47 -0.26 -1.53 16 31 H 0.12 -0.56 7.14 -51.93 -0.37 -0.93 16 32 H 0.10 -0.34 8.14 -51.93 -0.42 -0.76 16 33 H 0.39 -2.16 8.42 45.56 0.38 -1.78 16 34 H 0.10 -0.44 8.14 -51.93 -0.42 -0.86 16 35 H 0.12 -0.71 7.88 -51.93 -0.41 -1.12 16 36 H 0.15 -0.50 7.61 -52.49 -0.40 -0.90 16 37 H 0.14 -0.57 4.88 -52.48 -0.26 -0.82 16 LS Contribution 338.02 15.07 5.09 5.09 Total: 0.00 -10.86 338.02 -8.77 -19.64 By element: Atomic # 1 Polarization: -10.07 SS G_CDS: -2.60 Total: -12.67 kcal Atomic # 6 Polarization: 0.96 SS G_CDS: -2.84 Total: -1.89 kcal Atomic # 7 Polarization: 2.83 SS G_CDS: -0.02 Total: 2.81 kcal Atomic # 8 Polarization: -3.39 SS G_CDS: -2.84 Total: -6.23 kcal Atomic # 9 Polarization: 0.22 SS G_CDS: 0.11 Total: 0.34 kcal Atomic # 14 Polarization: -1.74 SS G_CDS: -5.06 Total: -6.81 kcal Atomic # 16 Polarization: 0.33 SS G_CDS: -0.61 Total: -0.28 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -10.86 -8.77 -19.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_17047582_13421422.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -217.463 kcal (2) G-P(sol) polarization free energy of solvation -10.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -228.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -237.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds