Wall clock time and date at job start Fri Mar 5 2021 23:13:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86300 * 109.47399 * 2 1 4 4 C 1.50702 * 109.47558 * 239.99479 * 2 1 3 5 5 C 1.38227 * 120.00094 * 300.00236 * 4 2 1 6 6 C 1.38237 * 120.00085 * 179.97438 * 5 4 2 7 7 C 1.38237 * 119.99608 * 359.95440 * 6 5 4 8 8 S 1.76203 * 119.99729 * 180.02562 * 7 6 5 9 9 O 1.42104 * 106.40146 * 336.46247 * 8 7 6 10 10 O 1.42095 * 106.40229 * 203.54504 * 8 7 6 11 11 N 1.65602 * 107.21635 * 90.00082 * 8 7 6 12 12 C 1.46498 * 119.99612 * 65.28001 * 11 8 7 13 13 H 1.08999 * 112.85033 * 344.38848 * 12 11 8 14 14 C 1.53783 * 113.61570 * 115.58430 * 12 11 8 15 15 C 1.54049 * 86.98576 * 89.16088 * 14 12 11 16 16 O 1.42905 * 113.68880 * 270.87690 * 15 14 12 17 17 C 1.52997 * 113.62326 * 139.97752 * 15 14 12 18 18 F 1.39898 * 109.47208 * 322.50874 * 17 15 14 19 19 F 1.39900 * 109.47152 * 82.50547 * 17 15 14 20 20 F 1.39892 * 109.47453 * 202.50479 * 17 15 14 21 21 C 1.53780 * 87.07959 * 25.43134 * 15 14 12 22 22 C 1.38232 * 120.00116 * 0.27904 * 7 6 5 23 23 C 1.38232 * 119.99531 * 119.97896 * 4 2 1 24 24 H 0.96700 * 113.99582 * 60.00454 * 1 2 3 25 25 H 1.09000 * 109.46931 * 119.99766 * 2 1 3 26 26 H 1.48503 * 109.99919 * 59.99329 * 3 2 1 27 27 H 1.48495 * 110.00468 * 181.31393 * 3 2 1 28 28 H 1.08004 * 120.00015 * 359.97438 * 5 4 2 29 29 H 1.07999 * 119.99949 * 179.97438 * 6 5 4 30 30 H 0.97001 * 119.99942 * 244.99525 * 11 8 7 31 31 H 1.09000 * 113.61251 * 203.66457 * 14 12 11 32 32 H 1.09002 * 113.61625 * 334.56854 * 14 12 11 33 33 H 0.96705 * 113.99755 * 277.52863 * 16 15 14 34 34 H 1.09002 * 113.61861 * 220.02462 * 21 15 14 35 35 H 1.08994 * 113.61778 * 89.11732 * 21 15 14 36 36 H 1.08001 * 119.99701 * 179.72178 * 22 7 6 37 37 H 1.08003 * 120.00660 * 0.02562 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9314 -0.7105 -1.2304 5 6 1.5975 -2.0339 -1.4491 6 6 2.0580 -2.6855 -2.5779 7 6 2.8516 -2.0132 -3.4886 8 16 3.4379 -2.8435 -4.9278 9 8 3.4279 -4.2314 -4.6225 10 8 4.6047 -2.1480 -5.3450 11 7 2.3086 -2.6184 -6.1179 12 6 2.0547 -1.2741 -6.6418 13 1 2.4557 -0.4878 -6.0022 14 6 2.4260 -1.1107 -8.1252 15 6 0.9909 -1.5664 -8.4506 16 8 0.8555 -2.9823 -8.5884 17 6 0.3488 -0.7931 -9.6041 18 9 0.7361 0.5496 -9.5381 19 9 0.7672 -1.3397 -10.8220 20 9 -1.0439 -0.8820 -9.5070 21 6 0.5933 -1.0420 -7.0607 22 6 3.1894 -0.6912 -3.2674 23 6 2.7258 -0.0386 -2.1404 24 1 -0.3932 0.4417 -0.7651 25 1 1.7923 -0.5138 0.8900 26 1 1.5614 2.4679 1.2084 27 1 3.5346 1.7703 -0.0320 28 1 0.9769 -2.5589 -0.7379 29 1 1.7974 -3.7196 -2.7486 30 1 1.8182 -3.3772 -6.4709 31 1 2.6325 -0.0797 -8.4126 32 1 3.1938 -1.8071 -8.4624 33 1 1.1041 -3.3182 -9.4605 34 1 -0.1175 -1.6830 -6.5391 35 1 0.2997 0.0076 -7.0576 36 1 3.8132 -0.1674 -3.9766 37 1 2.9867 0.9955 -1.9696 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_40_17047582_13421422.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 5 2021 23:13:12 Heat of formation + Delta-G solvation = -243.374489 kcal Electronic energy + Delta-G solvation = -30244.276096 eV Core-core repulsion = 25280.493710 eV Total energy + Delta-G solvation = -4963.782386 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 354.063 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -51.17685 -48.72228 -48.65986 -40.99216 -40.66737 -38.41696 -37.69688 -37.03787 -36.54996 -33.59333 -33.00247 -32.18414 -28.51620 -27.23363 -27.02606 -24.22491 -23.92887 -22.98857 -21.27929 -20.75858 -19.98382 -19.47860 -19.41011 -19.11118 -18.57225 -18.15015 -17.36251 -16.98105 -16.74220 -16.46323 -16.15546 -15.88939 -15.79374 -15.56115 -15.49326 -15.30077 -15.10267 -14.90757 -14.85227 -14.79713 -14.75428 -14.47728 -14.18419 -14.03776 -13.88413 -13.82901 -13.31856 -13.23781 -13.14829 -12.78182 -12.66106 -12.58066 -12.40294 -11.98840 -11.84476 -11.77638 -11.11444 -10.71272 -10.54507 -10.29965 -10.13689 -5.03786 -0.76811 -0.37436 0.20219 1.24152 1.59252 1.61243 1.84929 1.95457 2.33354 2.52299 2.65043 2.67052 2.77545 2.93563 3.20182 3.41508 3.46551 3.51066 3.52957 3.60950 3.78413 3.85202 4.08195 4.20980 4.24135 4.36845 4.39023 4.59074 4.60333 4.61236 4.82605 4.85573 4.92609 4.95280 4.99807 5.17904 5.26440 5.71066 6.00773 6.34235 6.71141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.551 6.551 2 C -0.084 4.084 3 Si 0.783 3.217 4 C -0.064 4.064 5 C -0.123 4.123 6 C -0.027 4.027 7 C -0.677 4.677 8 S 2.712 3.288 9 O -0.990 6.990 10 O -0.976 6.976 11 N -1.086 6.086 12 C 0.134 3.866 13 H 0.139 0.861 14 C -0.171 4.171 15 C 0.061 3.939 16 O -0.521 6.521 17 C 0.431 3.569 18 F -0.175 7.175 19 F -0.190 7.190 20 F -0.186 7.186 21 C -0.122 4.122 22 C -0.021 4.021 23 C -0.138 4.138 24 H 0.398 0.602 25 H 0.112 0.888 26 H -0.301 1.301 27 H -0.283 1.283 28 H 0.140 0.860 29 H 0.145 0.855 30 H 0.430 0.570 31 H 0.132 0.868 32 H 0.096 0.904 33 H 0.403 0.597 34 H 0.104 0.896 35 H 0.140 0.860 36 H 0.165 0.835 37 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.547 4.910 -1.236 5.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.359 6.359 2 C -0.193 4.193 3 Si 0.689 3.311 4 C -0.064 4.064 5 C -0.142 4.142 6 C -0.046 4.046 7 C -0.765 4.765 8 S 2.803 3.197 9 O -0.980 6.980 10 O -0.966 6.966 11 N -0.847 5.847 12 C 0.027 3.973 13 H 0.157 0.843 14 C -0.210 4.210 15 C 0.017 3.983 16 O -0.330 6.330 17 C 0.376 3.624 18 F -0.156 7.156 19 F -0.171 7.171 20 F -0.168 7.168 21 C -0.161 4.161 22 C -0.040 4.040 23 C -0.156 4.156 24 H 0.248 0.752 25 H 0.129 0.871 26 H -0.229 1.229 27 H -0.210 1.210 28 H 0.157 0.843 29 H 0.163 0.837 30 H 0.268 0.732 31 H 0.150 0.850 32 H 0.115 0.885 33 H 0.256 0.744 34 H 0.123 0.877 35 H 0.158 0.842 36 H 0.183 0.817 37 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -1.322 4.893 0.281 5.076 hybrid contribution -0.612 -0.846 -0.412 1.122 sum -1.934 4.047 -0.130 4.488 Atomic orbital electron populations 1.86505 1.16627 1.82160 1.50610 1.25357 0.85766 1.11252 0.96938 0.93710 0.77870 0.74496 0.85039 1.20850 0.94937 0.94804 0.95856 1.21298 1.00379 0.94535 0.97966 1.21119 0.91402 0.99844 0.92242 1.30811 1.15967 1.07894 1.21868 1.01158 0.73069 0.72365 0.73079 1.93576 1.86804 1.32736 1.84929 1.93583 1.45986 1.75537 1.81515 1.55179 1.60538 1.15612 1.53370 1.21598 0.96504 0.83772 0.95474 0.84335 1.24392 0.94199 1.05487 0.96940 1.23816 0.98590 0.83125 0.92778 1.86525 1.89802 1.16371 1.40307 1.21569 0.77036 0.79124 0.84630 1.93183 1.90686 1.35424 1.96332 1.93176 1.89923 1.85476 1.48551 1.93203 1.31356 1.96032 1.96188 1.23679 0.97935 1.04562 0.89906 1.21223 0.93981 0.91570 0.97257 1.21414 0.98667 1.01114 0.94444 0.75197 0.87077 1.22880 1.20966 0.84264 0.83682 0.73181 0.85036 0.88494 0.74442 0.87737 0.84182 0.81717 0.82354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 1.90 12.77 -148.98 -1.90 0.00 16 2 C -0.08 0.34 2.82 71.24 0.20 0.54 16 3 Si 0.78 -4.46 29.79 68.60 2.04 -2.41 16 4 C -0.06 0.22 5.39 -19.87 -0.11 0.11 16 5 C -0.12 0.19 9.61 22.27 0.21 0.41 16 6 C -0.03 0.02 9.52 22.27 0.21 0.23 16 7 C -0.68 1.07 5.95 22.27 0.13 1.20 16 8 S 2.71 1.81 5.69 -56.49 -0.32 1.49 16 9 O -0.99 -8.01 17.28 -128.00 -2.21 -10.22 16 10 O -0.98 -5.23 17.03 -128.00 -2.18 -7.41 16 11 N -1.09 5.66 5.68 -167.19 -0.95 4.71 16 12 C 0.13 -1.18 4.42 45.52 0.20 -0.98 16 13 H 0.14 -1.86 7.79 -2.39 -0.02 -1.88 16 14 C -0.17 1.36 7.17 31.21 0.22 1.59 16 15 C 0.06 -0.39 1.36 -10.18 -0.01 -0.41 16 16 O -0.52 3.07 12.02 -148.98 -1.79 1.28 16 17 C 0.43 -1.19 2.85 71.98 0.21 -0.98 16 18 F -0.17 0.49 15.76 44.97 0.71 1.19 16 19 F -0.19 0.13 16.65 44.97 0.75 0.88 16 20 F -0.19 -0.14 17.18 44.97 0.77 0.63 16 21 C -0.12 1.17 7.04 31.12 0.22 1.39 16 22 C -0.02 0.10 9.25 22.27 0.21 0.30 16 23 C -0.14 0.77 8.67 22.27 0.19 0.96 16 24 H 0.40 -4.76 8.70 -74.06 -0.64 -5.41 16 25 H 0.11 -0.27 7.96 -2.39 -0.02 -0.29 16 26 H -0.30 -0.79 7.11 99.48 0.71 -0.08 16 27 H -0.28 0.29 7.11 99.48 0.71 0.99 16 28 H 0.14 -0.36 8.06 -2.91 -0.02 -0.38 16 29 H 0.15 -0.28 7.62 -2.91 -0.02 -0.30 16 30 H 0.43 -2.40 7.56 -96.74 -0.73 -3.13 16 31 H 0.13 -1.39 7.14 -2.39 -0.02 -1.40 16 32 H 0.10 -0.65 8.14 -2.39 -0.02 -0.67 16 33 H 0.40 -4.23 8.42 -74.05 -0.62 -4.85 16 34 H 0.10 -0.95 8.14 -2.39 -0.02 -0.97 16 35 H 0.14 -1.87 7.88 -2.39 -0.02 -1.89 16 36 H 0.17 -1.45 7.61 -2.91 -0.02 -1.47 16 37 H 0.16 -1.66 4.88 -2.91 -0.01 -1.67 16 Total: 0.00 -24.92 338.02 -3.97 -28.89 By element: Atomic # 1 Polarization: -22.63 SS G_CDS: -0.78 Total: -23.41 kcal Atomic # 6 Polarization: 2.48 SS G_CDS: 1.89 Total: 4.37 kcal Atomic # 7 Polarization: 5.66 SS G_CDS: -0.95 Total: 4.71 kcal Atomic # 8 Polarization: -8.26 SS G_CDS: -8.09 Total: -16.34 kcal Atomic # 9 Polarization: 0.47 SS G_CDS: 2.23 Total: 2.70 kcal Atomic # 14 Polarization: -4.46 SS G_CDS: 2.04 Total: -2.41 kcal Atomic # 16 Polarization: 1.81 SS G_CDS: -0.32 Total: 1.49 kcal Total: -24.92 -3.97 -28.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_17047582_13421422.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -214.485 kcal (2) G-P(sol) polarization free energy of solvation -24.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -239.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -243.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds