Wall clock time and date at job start Fri Mar 5 2021 23:13:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42904 * 1 3 3 Si 1.86293 * 109.47369 * 2 1 4 4 C 1.50704 * 109.47074 * 239.99335 * 2 1 3 5 5 C 1.33378 * 125.20528 * 313.43367 * 4 2 1 6 6 S 1.76200 * 122.54297 * 0.02562 * 5 4 2 7 7 O 1.42103 * 106.40239 * 180.42657 * 6 5 4 8 8 O 1.42101 * 106.39678 * 313.34411 * 6 5 4 9 9 N 1.65594 * 107.21926 * 66.88419 * 6 5 4 10 10 C 1.46497 * 119.99924 * 65.36606 * 9 6 5 11 11 H 1.09003 * 112.85242 * 345.51596 * 10 9 6 12 12 C 1.53777 * 113.61759 * 116.82641 * 10 9 6 13 13 C 1.53774 * 87.08399 * 89.11286 * 12 10 9 14 14 O 1.42901 * 113.61914 * 270.88549 * 13 12 10 15 15 C 1.52998 * 113.69054 * 139.99261 * 13 12 10 16 16 F 1.39898 * 109.47353 * 322.46523 * 15 13 12 17 17 F 1.39900 * 109.47523 * 82.46616 * 15 13 12 18 18 F 1.39907 * 109.47384 * 202.46677 * 15 13 12 19 19 C 1.53781 * 87.08137 * 25.43601 * 13 12 10 20 20 C 1.38439 * 114.91875 * 179.79028 * 5 4 2 21 21 C 1.33381 * 114.91954 * 0.43012 * 20 5 4 22 22 S 1.75884 * 125.19888 * 133.45519 * 4 2 1 23 23 H 0.96698 * 113.99389 * 60.77937 * 1 2 3 24 24 H 1.09002 * 109.46734 * 120.00376 * 2 1 3 25 25 H 1.48498 * 109.99918 * 298.67830 * 3 2 1 26 26 H 1.48498 * 109.99885 * 59.99537 * 3 2 1 27 27 H 0.96996 * 119.99811 * 245.36325 * 9 6 5 28 28 H 1.09001 * 113.61840 * 203.66405 * 12 10 9 29 29 H 1.09003 * 113.61135 * 334.56220 * 12 10 9 30 30 H 0.96700 * 114.00168 * 277.49842 * 14 13 12 31 31 H 1.08996 * 113.61369 * 220.01936 * 19 13 12 32 32 H 1.09000 * 113.61360 * 89.11193 * 19 13 12 33 33 H 1.07994 * 122.53827 * 180.27362 * 20 5 4 34 34 H 1.07993 * 125.20690 * 179.85972 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9314 -0.7106 -1.2304 5 6 1.4813 -1.8833 -1.6787 6 16 0.2013 -2.7808 -0.8657 7 8 0.0030 -3.9688 -1.6198 8 8 0.5293 -2.7836 0.5169 9 7 -1.1896 -1.8946 -1.0147 10 6 -1.7831 -1.6797 -2.3367 11 1 -1.1026 -1.9270 -3.1515 12 6 -3.1826 -2.2978 -2.4915 13 6 -3.7430 -0.9663 -1.9646 14 8 -3.8666 -0.9201 -0.5417 15 6 -5.0105 -0.5042 -2.6863 16 9 -4.9116 -0.8138 -4.0470 17 9 -6.1219 -1.1547 -2.1397 18 9 -5.1571 0.8786 -2.5323 19 6 -2.4582 -0.3069 -2.4931 20 6 2.0924 -2.3396 -2.8341 21 6 3.0449 -1.5416 -3.3188 22 16 3.2013 -0.1203 -2.2946 23 1 -0.3932 0.4313 -0.7710 24 1 1.7923 -0.5139 0.8900 25 1 1.5881 2.4584 -1.2243 26 1 1.5615 2.4678 1.2084 27 1 -1.6113 -1.5179 -0.2267 28 1 -3.4554 -2.5076 -3.5258 29 1 -3.3634 -3.1416 -1.8256 30 1 -4.6727 -1.3333 -0.2033 31 1 -2.0541 0.4566 -1.8285 32 1 -2.5329 0.0276 -3.5278 33 1 1.8203 -3.2723 -3.3056 34 1 3.6277 -1.7361 -4.2069 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_40_17047582_14772022.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 5 2021 23:13:16 Heat of formation + Delta-G solvation = -224.050750 kcal Electronic energy + Delta-G solvation = -30117.542971 eV Core-core repulsion = 25243.750771 eV Total energy + Delta-G solvation = -4873.792199 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 360.019 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -51.22922 -48.77491 -48.71136 -41.07886 -39.66918 -38.41665 -37.55009 -36.95156 -36.52435 -33.53336 -31.80181 -28.54821 -27.53227 -27.08507 -24.45634 -24.02491 -21.82162 -21.23552 -20.38903 -19.84487 -19.55376 -19.39495 -19.28914 -18.62247 -18.08232 -17.14982 -16.98904 -16.94666 -16.47247 -16.21877 -15.79402 -15.60776 -15.46517 -15.32110 -15.15731 -15.13548 -14.94991 -14.89867 -14.80316 -14.20189 -14.17549 -14.02084 -13.97800 -13.83294 -13.27457 -13.17567 -13.12517 -12.87956 -12.79199 -12.61842 -12.50702 -12.26307 -11.87710 -11.58862 -11.16203 -11.04791 -10.49419 -10.11407 -9.72275 -5.10745 -0.71240 -0.47493 0.39514 0.66629 1.08885 1.14828 1.52402 1.53832 1.85424 2.01726 2.46821 2.60376 2.64768 2.73730 2.87826 3.11589 3.29153 3.42445 3.43065 3.51535 3.55893 4.03321 4.14650 4.26274 4.28691 4.46178 4.52536 4.55198 4.72435 4.76197 4.84808 4.96970 5.16055 5.16877 6.12413 6.26711 6.31597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.526 6.526 2 C -0.082 4.082 3 Si 0.740 3.260 4 C -0.106 4.106 5 C -0.675 4.675 6 S 2.726 3.274 7 O -0.988 6.988 8 O -0.982 6.982 9 N -1.075 6.075 10 C 0.135 3.865 11 H 0.131 0.869 12 C -0.171 4.171 13 C 0.065 3.935 14 O -0.518 6.518 15 C 0.431 3.569 16 F -0.176 7.176 17 F -0.189 7.189 18 F -0.186 7.186 19 C -0.125 4.125 20 C -0.096 4.096 21 C -0.208 4.208 22 S 0.195 5.805 23 H 0.387 0.613 24 H 0.145 0.855 25 H -0.248 1.248 26 H -0.269 1.269 27 H 0.433 0.567 28 H 0.128 0.872 29 H 0.096 0.904 30 H 0.402 0.598 31 H 0.107 0.893 32 H 0.138 0.862 33 H 0.159 0.841 34 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.498 3.921 -4.091 6.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.336 6.336 2 C -0.192 4.192 3 Si 0.638 3.362 4 C -0.228 4.228 5 C -0.777 4.777 6 S 2.815 3.185 7 O -0.978 6.978 8 O -0.973 6.973 9 N -0.839 5.839 10 C 0.027 3.973 11 H 0.149 0.851 12 C -0.211 4.211 13 C 0.021 3.979 14 O -0.327 6.327 15 C 0.376 3.624 16 F -0.157 7.157 17 F -0.171 7.171 18 F -0.167 7.167 19 C -0.163 4.163 20 C -0.124 4.124 21 C -0.343 4.343 22 S 0.460 5.540 23 H 0.239 0.761 24 H 0.163 0.837 25 H -0.173 1.173 26 H -0.194 1.194 27 H 0.274 0.726 28 H 0.146 0.854 29 H 0.114 0.886 30 H 0.255 0.745 31 H 0.126 0.874 32 H 0.156 0.844 33 H 0.177 0.823 34 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 5.011 5.177 -3.387 7.962 hybrid contribution -2.859 -1.143 -0.419 3.107 sum 2.152 4.035 -3.806 5.950 Atomic orbital electron populations 1.86702 1.16560 1.80367 1.49942 1.25232 0.84666 1.12779 0.96543 0.94183 0.90214 0.71266 0.80501 1.25150 1.00319 0.96947 1.00357 1.29669 1.24940 1.10325 1.12768 1.00727 0.72808 0.72672 0.72291 1.93553 1.85774 1.44799 1.73718 1.93551 1.83984 1.86857 1.32876 1.55244 1.40971 1.72764 1.14873 1.21531 0.95097 0.95866 0.84802 0.85107 1.24318 0.95965 0.95918 1.04860 1.23672 0.90004 1.00731 0.83449 1.86546 1.48162 1.82518 1.15456 1.21573 0.87106 0.75293 0.78382 1.93183 1.96175 1.92668 1.33715 1.93177 1.57103 1.81306 1.85478 1.93206 1.96389 1.31732 1.95389 1.23740 0.90258 0.97925 1.04426 1.19861 0.96649 1.01864 0.93986 1.26272 1.04090 0.98211 1.05775 1.84180 1.32555 1.21022 1.16277 0.76092 0.83719 1.17262 1.19361 0.72610 0.85404 0.88589 0.74515 0.87415 0.84379 0.82313 0.78479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 1.21 8.61 -144.95 -1.25 -0.04 16 2 C -0.08 0.18 2.07 71.24 0.15 0.33 16 3 Si 0.74 -3.61 31.07 68.60 2.13 -1.48 16 4 C -0.11 0.21 5.74 24.59 0.14 0.35 16 5 C -0.67 -0.32 5.78 21.22 0.12 -0.20 16 6 S 2.73 11.70 4.88 -56.49 -0.28 11.43 16 7 O -0.99 -9.34 17.10 -128.00 -2.19 -11.52 16 8 O -0.98 -10.92 16.65 -124.43 -2.07 -13.00 16 9 N -1.07 2.37 3.66 -167.20 -0.61 1.76 16 10 C 0.14 -0.85 4.43 45.52 0.20 -0.65 16 11 H 0.13 -1.21 8.05 -2.39 -0.02 -1.22 16 12 C -0.17 0.97 7.15 31.12 0.22 1.19 16 13 C 0.07 -0.33 1.36 -10.27 -0.01 -0.34 16 14 O -0.52 2.30 12.00 -148.98 -1.79 0.52 16 15 C 0.43 -0.63 2.85 71.98 0.21 -0.43 16 16 F -0.18 0.20 15.76 44.97 0.71 0.91 16 17 F -0.19 -0.11 16.65 44.97 0.75 0.64 16 18 F -0.19 -0.31 17.18 44.97 0.77 0.46 16 19 C -0.12 1.06 7.03 31.12 0.22 1.28 16 20 C -0.10 0.12 9.70 21.22 0.21 0.33 16 21 C -0.21 1.01 11.23 66.72 0.75 1.76 16 22 S 0.20 -1.08 20.70 -56.49 -1.17 -2.25 16 23 H 0.39 -3.24 6.73 -74.06 -0.50 -3.74 16 24 H 0.15 -0.14 7.74 -2.39 -0.02 -0.16 16 25 H -0.25 0.86 7.11 99.48 0.71 1.56 16 26 H -0.27 -0.45 7.11 99.48 0.71 0.26 16 27 H 0.43 -0.91 6.43 -96.76 -0.62 -1.54 16 28 H 0.13 -1.00 7.14 -2.39 -0.02 -1.02 16 29 H 0.10 -0.40 8.14 -2.39 -0.02 -0.42 16 30 H 0.40 -3.56 8.42 -74.06 -0.62 -4.18 16 31 H 0.11 -1.08 6.53 -2.39 -0.02 -1.09 16 32 H 0.14 -1.63 7.88 -2.39 -0.02 -1.65 16 33 H 0.16 -0.31 7.74 -2.91 -0.02 -0.33 16 34 H 0.20 -1.96 8.06 -2.91 -0.02 -1.98 16 Total: 0.00 -21.20 318.66 -3.28 -24.48 By element: Atomic # 1 Polarization: -15.02 SS G_CDS: -0.49 Total: -15.51 kcal Atomic # 6 Polarization: 1.41 SS G_CDS: 2.20 Total: 3.61 kcal Atomic # 7 Polarization: 2.37 SS G_CDS: -0.61 Total: 1.76 kcal Atomic # 8 Polarization: -16.75 SS G_CDS: -7.30 Total: -24.04 kcal Atomic # 9 Polarization: -0.22 SS G_CDS: 2.23 Total: 2.01 kcal Atomic # 14 Polarization: -3.61 SS G_CDS: 2.13 Total: -1.48 kcal Atomic # 16 Polarization: 10.62 SS G_CDS: -1.45 Total: 9.18 kcal Total: -21.20 -3.28 -24.48 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_17047582_14772022.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -199.571 kcal (2) G-P(sol) polarization free energy of solvation -21.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -220.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -224.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds