Wall clock time and date at job start Fri Mar 5 2021 23:13:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.33392 * 125.20102 * 2 1 4 4 C 1.50695 * 122.54156 * 0.02562 * 3 2 1 5 5 O 1.42900 * 109.47206 * 76.19244 * 4 3 2 6 6 Si 1.86296 * 109.47187 * 316.19115 * 4 3 2 7 7 C 1.38426 * 114.91822 * 180.02562 * 3 2 1 8 8 S 1.76205 * 122.53853 * 180.27060 * 7 3 2 9 9 O 1.42099 * 106.39970 * 24.45244 * 8 7 3 10 10 O 1.42095 * 106.40198 * 157.37104 * 8 7 3 11 11 N 1.65594 * 107.21779 * 270.91108 * 8 7 3 12 12 C 1.46506 * 120.00034 * 63.05814 * 11 8 7 13 13 H 1.09001 * 112.84798 * 345.87738 * 12 11 8 14 14 C 1.53779 * 113.61202 * 117.17536 * 12 11 8 15 15 C 1.53776 * 87.08225 * 89.11822 * 14 12 11 16 16 O 1.42896 * 113.69046 * 270.87354 * 15 14 12 17 17 C 1.52997 * 113.61424 * 139.98087 * 15 14 12 18 18 F 1.39898 * 109.47390 * 322.49985 * 17 15 14 19 19 F 1.39893 * 109.47335 * 82.50598 * 17 15 14 20 20 F 1.39910 * 109.47176 * 202.50435 * 17 15 14 21 21 C 1.53780 * 113.61770 * 214.67278 * 12 11 8 22 22 C 1.33383 * 114.92228 * 359.97438 * 7 3 2 23 23 C 1.50697 * 125.20469 * 180.02562 * 22 7 3 24 24 S 1.75879 * 125.20552 * 179.97438 * 2 1 3 25 25 H 1.09000 * 109.47437 * 184.70090 * 1 2 3 26 26 H 1.09001 * 109.47201 * 304.70524 * 1 2 3 27 27 H 1.09008 * 109.47040 * 64.69908 * 1 2 3 28 28 H 1.09000 * 109.47323 * 196.19191 * 4 3 2 29 29 H 0.96694 * 113.99918 * 294.53096 * 5 4 3 30 30 H 1.48501 * 110.00395 * 182.52069 * 6 4 3 31 31 H 1.48503 * 110.00123 * 303.84286 * 6 4 3 32 32 H 0.97000 * 120.00543 * 243.06739 * 11 8 7 33 33 H 1.09006 * 113.61841 * 203.66856 * 14 12 11 34 34 H 1.09002 * 113.61487 * 334.56575 * 14 12 11 35 35 H 0.96700 * 114.00132 * 277.52664 * 16 15 14 36 36 H 1.09002 * 113.61064 * 25.43298 * 21 12 11 37 37 H 1.08998 * 113.61549 * 156.25095 * 21 12 11 38 38 H 1.09005 * 109.47108 * 90.00081 * 23 22 7 39 39 H 1.08996 * 109.47573 * 210.00023 * 23 22 7 40 40 H 1.09005 * 109.47310 * 330.00208 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0900 0.0000 4 6 1.7051 2.4847 0.0006 5 8 1.2276 2.8034 1.3092 6 14 0.2964 2.5796 -1.2148 7 6 3.6379 0.8429 -0.0006 8 16 4.8356 2.1353 0.0063 9 8 4.1979 3.2703 0.5759 10 8 6.0309 1.5718 0.5286 11 7 5.1511 2.5197 -1.5732 12 6 4.0860 3.0582 -2.4228 13 1 3.0940 2.9320 -1.9891 14 6 4.3626 4.4842 -2.9277 15 6 5.0681 3.8369 -4.1310 16 8 6.4591 3.5901 -3.9164 17 6 4.7880 4.5437 -5.4587 18 9 3.4580 4.9769 -5.4850 19 9 5.6400 5.6456 -5.5892 20 9 5.0098 3.6549 -6.5162 21 6 4.1794 2.6053 -3.8894 22 6 3.9750 -0.4476 -0.0005 23 6 5.3860 -0.9770 -0.0005 24 16 2.5209 -1.4371 0.0006 25 1 -0.3634 -1.0242 0.0842 26 1 -0.3634 0.5851 0.8448 27 1 -0.3633 0.4392 -0.9292 28 1 2.4807 3.1948 -0.2861 29 1 0.4778 2.2645 1.5963 30 1 -0.2358 3.9650 -1.2684 31 1 0.7590 2.1607 -2.5623 32 1 6.0410 2.3882 -1.9360 33 1 3.4609 5.0355 -3.1949 34 1 5.0324 5.0534 -2.2831 35 1 7.0232 4.3609 -4.0670 36 1 4.7015 1.6575 -4.0212 37 1 3.2275 2.6413 -4.4191 38 1 5.7262 -1.1046 1.0273 39 1 5.4136 -1.9379 -0.5142 40 1 6.0388 -0.2714 -0.5143 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV m_40_17047582_15065288.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 5 2021 23:13:25 Heat of formation + Delta-G solvation = -225.033388 kcal Electronic energy + Delta-G solvation = -34608.735241 eV Core-core repulsion = 29423.825194 eV Total energy + Delta-G solvation = -5184.910048 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 388.050 amu Computer time = 2.02 seconds Orbital eigenvalues (eV) -51.29753 -48.84597 -48.74911 -41.37280 -40.36836 -38.48817 -37.11818 -36.90723 -36.83816 -34.40374 -33.83037 -31.09392 -28.76561 -28.11710 -27.42624 -26.07237 -24.32095 -23.25753 -21.56465 -21.02493 -20.39136 -19.95803 -19.59421 -19.48230 -19.00308 -18.60780 -17.90849 -17.53359 -17.25113 -16.87292 -16.33087 -16.08943 -15.97844 -15.72903 -15.63618 -15.55002 -15.28335 -15.20783 -15.04858 -14.95784 -14.89462 -14.76235 -14.55013 -14.44153 -14.29782 -14.26994 -14.13816 -13.70681 -13.50570 -13.34010 -13.21108 -13.14981 -13.05306 -12.83131 -12.77680 -12.64089 -12.17107 -12.12471 -11.70349 -11.63063 -11.38896 -10.85363 -10.53706 -10.07613 -9.57521 -5.05846 -0.81185 -0.49341 0.30784 0.61193 0.76960 1.18888 1.38725 1.49662 1.84644 1.87982 2.19630 2.43815 2.46938 2.64790 2.65236 3.11834 3.17455 3.25567 3.34952 3.39779 3.43496 3.61255 3.71725 3.88737 3.91631 3.96182 4.15244 4.16018 4.17312 4.25148 4.35517 4.42137 4.42932 4.53564 4.55134 4.65003 4.81350 4.85246 4.97681 5.11103 5.77130 5.94672 6.58785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.192 4.192 3 C -0.069 4.069 4 C -0.072 4.072 5 O -0.514 6.514 6 Si 0.634 3.366 7 C -0.683 4.683 8 S 2.700 3.300 9 O -0.934 6.934 10 O -0.948 6.948 11 N -1.094 6.094 12 C 0.138 3.862 13 H 0.105 0.895 14 C -0.172 4.172 15 C 0.065 3.935 16 O -0.510 6.510 17 C 0.434 3.566 18 F -0.174 7.174 19 F -0.181 7.181 20 F -0.174 7.174 21 C -0.127 4.127 22 C -0.047 4.047 23 C -0.113 4.113 24 S 0.168 5.832 25 H 0.090 0.910 26 H 0.090 0.910 27 H 0.091 0.909 28 H 0.133 0.867 29 H 0.368 0.632 30 H -0.236 1.236 31 H -0.245 1.245 32 H 0.428 0.572 33 H 0.118 0.882 34 H 0.106 0.894 35 H 0.395 0.605 36 H 0.107 0.893 37 H 0.120 0.880 38 H 0.101 0.899 39 H 0.083 0.917 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.690 -4.397 -1.752 6.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.310 4.310 3 C -0.080 4.080 4 C -0.185 4.185 5 O -0.318 6.318 6 Si 0.534 3.466 7 C -0.782 4.782 8 S 2.788 3.212 9 O -0.924 6.924 10 O -0.938 6.938 11 N -0.854 5.854 12 C 0.029 3.971 13 H 0.123 0.877 14 C -0.212 4.212 15 C 0.021 3.979 16 O -0.318 6.318 17 C 0.380 3.620 18 F -0.155 7.155 19 F -0.162 7.162 20 F -0.155 7.155 21 C -0.166 4.166 22 C -0.168 4.168 23 C -0.172 4.172 24 S 0.435 5.565 25 H 0.109 0.891 26 H 0.109 0.891 27 H 0.109 0.891 28 H 0.150 0.850 29 H 0.214 0.786 30 H -0.160 1.160 31 H -0.169 1.169 32 H 0.266 0.734 33 H 0.137 0.863 34 H 0.125 0.875 35 H 0.246 0.754 36 H 0.126 0.874 37 H 0.138 0.862 38 H 0.120 0.880 39 H 0.101 0.899 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -3.828 -5.358 -1.603 6.777 hybrid contribution 1.034 1.579 -0.843 2.068 sum -2.794 -3.779 -2.445 5.297 Atomic orbital electron populations 1.20385 0.87217 1.04058 1.02887 1.24343 1.00236 0.95328 1.11069 1.18637 0.90642 0.96990 1.01702 1.25393 1.06221 0.92864 0.94054 1.86696 1.52591 1.61860 1.30668 0.94961 0.86863 0.85668 0.79146 1.29468 1.11853 1.13348 1.23512 1.01901 0.73295 0.73890 0.72157 1.93620 1.76268 1.47918 1.74545 1.93614 1.44752 1.79182 1.76248 1.55483 1.19643 1.79181 1.31086 1.21407 0.90622 0.93776 0.91297 0.87693 1.24291 1.02905 0.98119 0.95853 1.23542 0.85913 0.99286 0.89182 1.86535 1.13497 1.40924 1.90838 1.21193 0.74672 0.77784 0.88376 1.93194 1.35363 1.90219 1.96760 1.93196 1.70712 1.55728 1.96561 1.93236 1.94314 1.67907 1.60046 1.23588 0.99486 0.97663 0.95896 1.24606 1.00872 0.95041 0.96276 1.20941 0.88203 1.02559 1.05487 1.84389 0.94911 1.08007 1.69199 0.89143 0.89141 0.89122 0.84990 0.78585 1.16032 1.16861 0.73414 0.86345 0.87534 0.75358 0.87411 0.86188 0.88039 0.89858 0.88475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 0.41 8.34 36.00 0.30 0.71 16 2 C -0.19 0.22 6.11 -36.00 -0.22 0.00 16 3 C -0.07 -0.05 4.63 -106.25 -0.49 -0.55 16 4 C -0.07 -0.09 1.55 36.00 0.06 -0.03 16 5 O -0.51 -1.00 12.94 -35.23 -0.46 -1.46 16 6 Si 0.63 -0.71 26.16 -169.99 -4.45 -5.16 16 7 C -0.68 -0.98 5.83 -41.21 -0.24 -1.22 16 8 S 2.70 6.07 5.23 -107.50 -0.56 5.51 16 9 O -0.93 -4.75 14.55 -57.17 -0.83 -5.58 16 10 O -0.95 -3.79 15.01 -57.17 -0.86 -4.65 16 11 N -1.09 0.72 5.68 -4.20 -0.02 0.69 16 12 C 0.14 -0.16 4.35 -67.12 -0.29 -0.45 16 13 H 0.11 -0.12 4.12 -51.93 -0.21 -0.34 16 14 C -0.17 0.30 7.15 -25.92 -0.19 0.11 16 15 C 0.06 -0.11 1.36 -89.81 -0.12 -0.23 16 16 O -0.51 1.15 12.01 -35.23 -0.42 0.73 16 17 C 0.43 -0.09 2.85 37.16 0.11 0.01 16 18 F -0.17 -0.05 15.76 2.25 0.04 -0.01 16 19 F -0.18 -0.04 16.65 2.25 0.04 -0.01 16 20 F -0.17 -0.21 17.18 2.25 0.04 -0.17 16 21 C -0.13 0.27 7.05 -25.92 -0.18 0.09 16 22 C -0.05 -0.02 6.49 -36.01 -0.23 -0.25 16 23 C -0.11 0.09 9.10 36.00 0.33 0.42 16 24 S 0.17 -0.19 23.31 -107.50 -2.51 -2.70 16 25 H 0.09 -0.51 8.14 -51.93 -0.42 -0.94 16 26 H 0.09 -0.59 6.45 -51.93 -0.34 -0.92 16 27 H 0.09 -0.51 4.66 -51.92 -0.24 -0.76 16 28 H 0.13 0.32 3.36 -51.93 -0.17 0.14 16 29 H 0.37 -1.03 7.17 45.56 0.33 -0.71 16 30 H -0.24 -0.37 7.11 56.52 0.40 0.03 16 31 H -0.24 0.08 7.11 56.52 0.40 0.48 16 32 H 0.43 -0.78 7.54 -34.47 -0.26 -1.04 16 33 H 0.12 -0.30 7.13 -51.93 -0.37 -0.67 16 34 H 0.11 -0.21 8.14 -51.93 -0.42 -0.63 16 35 H 0.40 -1.94 8.42 45.56 0.38 -1.56 16 36 H 0.11 -0.28 8.14 -51.93 -0.42 -0.70 16 37 H 0.12 -0.38 7.89 -51.93 -0.41 -0.79 16 38 H 0.10 -0.08 8.14 -51.93 -0.42 -0.50 16 39 H 0.08 -0.24 8.14 -51.93 -0.42 -0.66 16 40 H 0.10 -0.07 6.23 -51.93 -0.32 -0.40 16 LS Contribution 347.17 15.07 5.23 5.23 Total: 0.00 -10.03 347.17 -8.87 -18.90 By element: Atomic # 1 Polarization: -7.02 SS G_CDS: -2.93 Total: -9.95 kcal Atomic # 6 Polarization: -0.20 SS G_CDS: -1.18 Total: -1.38 kcal Atomic # 7 Polarization: 0.72 SS G_CDS: -0.02 Total: 0.69 kcal Atomic # 8 Polarization: -8.38 SS G_CDS: -2.57 Total: -10.95 kcal Atomic # 9 Polarization: -0.30 SS G_CDS: 0.11 Total: -0.19 kcal Atomic # 14 Polarization: -0.71 SS G_CDS: -4.45 Total: -5.16 kcal Atomic # 16 Polarization: 5.88 SS G_CDS: -3.07 Total: 2.81 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -10.03 -8.87 -18.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_17047582_15065288.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -206.136 kcal (2) G-P(sol) polarization free energy of solvation -10.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -216.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -225.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.02 seconds