Wall clock time and date at job start Fri Mar 5 2021 23:13:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.33392 * 125.20102 * 2 1 4 4 C 1.50695 * 122.54156 * 0.02562 * 3 2 1 5 5 O 1.42900 * 109.47206 * 76.19244 * 4 3 2 6 6 Si 1.86296 * 109.47187 * 316.19115 * 4 3 2 7 7 C 1.38426 * 114.91822 * 180.02562 * 3 2 1 8 8 S 1.76205 * 122.53853 * 180.27060 * 7 3 2 9 9 O 1.42099 * 106.39970 * 24.45244 * 8 7 3 10 10 O 1.42095 * 106.40198 * 157.37104 * 8 7 3 11 11 N 1.65594 * 107.21779 * 270.91108 * 8 7 3 12 12 C 1.46506 * 120.00034 * 63.05814 * 11 8 7 13 13 H 1.09001 * 112.84798 * 345.87738 * 12 11 8 14 14 C 1.53779 * 113.61202 * 117.17536 * 12 11 8 15 15 C 1.53776 * 87.08225 * 89.11822 * 14 12 11 16 16 O 1.42896 * 113.69046 * 270.87354 * 15 14 12 17 17 C 1.52997 * 113.61424 * 139.98087 * 15 14 12 18 18 F 1.39898 * 109.47390 * 322.49985 * 17 15 14 19 19 F 1.39893 * 109.47335 * 82.50598 * 17 15 14 20 20 F 1.39910 * 109.47176 * 202.50435 * 17 15 14 21 21 C 1.53780 * 113.61770 * 214.67278 * 12 11 8 22 22 C 1.33383 * 114.92228 * 359.97438 * 7 3 2 23 23 C 1.50697 * 125.20469 * 180.02562 * 22 7 3 24 24 S 1.75879 * 125.20552 * 179.97438 * 2 1 3 25 25 H 1.09000 * 109.47437 * 184.70090 * 1 2 3 26 26 H 1.09001 * 109.47201 * 304.70524 * 1 2 3 27 27 H 1.09008 * 109.47040 * 64.69908 * 1 2 3 28 28 H 1.09000 * 109.47323 * 196.19191 * 4 3 2 29 29 H 0.96694 * 113.99918 * 294.53096 * 5 4 3 30 30 H 1.48501 * 110.00395 * 182.52069 * 6 4 3 31 31 H 1.48503 * 110.00123 * 303.84286 * 6 4 3 32 32 H 0.97000 * 120.00543 * 243.06739 * 11 8 7 33 33 H 1.09006 * 113.61841 * 203.66856 * 14 12 11 34 34 H 1.09002 * 113.61487 * 334.56575 * 14 12 11 35 35 H 0.96700 * 114.00132 * 277.52664 * 16 15 14 36 36 H 1.09002 * 113.61064 * 25.43298 * 21 12 11 37 37 H 1.08998 * 113.61549 * 156.25095 * 21 12 11 38 38 H 1.09005 * 109.47108 * 90.00081 * 23 22 7 39 39 H 1.08996 * 109.47573 * 210.00023 * 23 22 7 40 40 H 1.09005 * 109.47310 * 330.00208 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0900 0.0000 4 6 1.7051 2.4847 0.0006 5 8 1.2276 2.8034 1.3092 6 14 0.2964 2.5796 -1.2148 7 6 3.6379 0.8429 -0.0006 8 16 4.8356 2.1353 0.0063 9 8 4.1979 3.2703 0.5759 10 8 6.0309 1.5718 0.5286 11 7 5.1511 2.5197 -1.5732 12 6 4.0860 3.0582 -2.4228 13 1 3.0940 2.9320 -1.9891 14 6 4.3626 4.4842 -2.9277 15 6 5.0681 3.8369 -4.1310 16 8 6.4591 3.5901 -3.9164 17 6 4.7880 4.5437 -5.4587 18 9 3.4580 4.9769 -5.4850 19 9 5.6400 5.6456 -5.5892 20 9 5.0098 3.6549 -6.5162 21 6 4.1794 2.6053 -3.8894 22 6 3.9750 -0.4476 -0.0005 23 6 5.3860 -0.9770 -0.0005 24 16 2.5209 -1.4371 0.0006 25 1 -0.3634 -1.0242 0.0842 26 1 -0.3634 0.5851 0.8448 27 1 -0.3633 0.4392 -0.9292 28 1 2.4807 3.1948 -0.2861 29 1 0.4778 2.2645 1.5963 30 1 -0.2358 3.9650 -1.2684 31 1 0.7590 2.1607 -2.5623 32 1 6.0410 2.3882 -1.9360 33 1 3.4609 5.0355 -3.1949 34 1 5.0324 5.0534 -2.2831 35 1 7.0232 4.3609 -4.0670 36 1 4.7015 1.6575 -4.0212 37 1 3.2275 2.6413 -4.4191 38 1 5.7262 -1.1046 1.0273 39 1 5.4136 -1.9379 -0.5142 40 1 6.0388 -0.2714 -0.5143 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_40_17047582_15065288.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 5 2021 23:13:24 Heat of formation + Delta-G solvation = -230.740532 kcal Electronic energy + Delta-G solvation = -34608.982722 eV Core-core repulsion = 29423.825194 eV Total energy + Delta-G solvation = -5185.157528 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 388.050 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -51.30570 -48.85052 -48.77917 -41.25559 -40.31790 -38.68741 -37.16727 -37.13513 -36.71915 -34.27517 -33.78227 -30.90735 -28.71928 -28.09550 -27.27435 -25.93901 -24.26550 -23.24278 -21.48624 -21.01062 -20.34391 -19.97360 -19.59799 -19.47815 -19.00579 -18.64185 -17.92341 -17.49324 -17.16375 -16.88077 -16.33575 -16.06717 -15.91512 -15.71829 -15.65234 -15.51475 -15.26798 -15.22494 -15.02899 -14.97199 -14.88482 -14.62794 -14.49576 -14.35141 -14.19858 -14.14715 -14.03029 -13.64455 -13.44270 -13.41330 -13.28771 -13.06642 -13.02165 -12.76435 -12.71129 -12.59756 -12.16415 -12.03778 -11.72145 -11.60351 -11.28582 -10.80122 -10.53035 -9.98809 -9.49000 -4.97552 -0.90603 -0.45696 0.39657 0.67526 0.80509 1.22727 1.43414 1.57353 1.84098 1.92145 2.34023 2.48277 2.50619 2.60415 2.73578 3.09403 3.24807 3.32058 3.41731 3.46897 3.52654 3.72159 3.81305 4.00284 4.02097 4.13802 4.25983 4.34325 4.37458 4.50861 4.55405 4.59578 4.62153 4.69860 4.70722 4.88850 4.91341 4.99999 5.06420 5.27136 5.86188 6.23139 6.78523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.183 4.183 3 C -0.092 4.092 4 C -0.093 4.093 5 O -0.540 6.540 6 Si 0.720 3.280 7 C -0.693 4.693 8 S 2.707 3.293 9 O -0.970 6.970 10 O -0.974 6.974 11 N -1.083 6.083 12 C 0.129 3.871 13 H 0.105 0.895 14 C -0.175 4.175 15 C 0.071 3.929 16 O -0.515 6.515 17 C 0.433 3.567 18 F -0.177 7.177 19 F -0.185 7.185 20 F -0.182 7.182 21 C -0.125 4.125 22 C -0.062 4.062 23 C -0.119 4.119 24 S 0.199 5.801 25 H 0.108 0.892 26 H 0.112 0.888 27 H 0.107 0.893 28 H 0.114 0.886 29 H 0.386 0.614 30 H -0.279 1.279 31 H -0.252 1.252 32 H 0.433 0.567 33 H 0.126 0.874 34 H 0.106 0.894 35 H 0.406 0.594 36 H 0.114 0.886 37 H 0.132 0.868 38 H 0.097 0.903 39 H 0.104 0.896 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.988 -5.805 -2.374 8.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.301 4.301 3 C -0.103 4.103 4 C -0.204 4.204 5 O -0.347 6.347 6 Si 0.620 3.380 7 C -0.795 4.795 8 S 2.798 3.202 9 O -0.959 6.959 10 O -0.964 6.964 11 N -0.846 5.846 12 C 0.020 3.980 13 H 0.123 0.877 14 C -0.215 4.215 15 C 0.027 3.973 16 O -0.325 6.325 17 C 0.379 3.621 18 F -0.159 7.159 19 F -0.166 7.166 20 F -0.164 7.164 21 C -0.164 4.164 22 C -0.183 4.183 23 C -0.178 4.178 24 S 0.465 5.535 25 H 0.127 0.873 26 H 0.130 0.870 27 H 0.124 0.876 28 H 0.131 0.869 29 H 0.235 0.765 30 H -0.206 1.206 31 H -0.177 1.177 32 H 0.272 0.728 33 H 0.144 0.856 34 H 0.125 0.875 35 H 0.259 0.741 36 H 0.132 0.868 37 H 0.150 0.850 38 H 0.115 0.885 39 H 0.123 0.877 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -5.083 -6.764 -2.207 8.744 hybrid contribution 1.437 2.012 -0.637 2.553 sum -3.646 -4.752 -2.844 6.630 Atomic orbital electron populations 1.20697 0.84722 1.05767 1.04452 1.24800 1.01937 0.94658 1.08701 1.18641 0.90567 0.97326 1.03754 1.25687 1.07363 0.92824 0.94501 1.86639 1.53770 1.62854 1.31468 0.94046 0.84014 0.82901 0.76997 1.29291 1.12025 1.13231 1.24934 1.01300 0.72823 0.73594 0.72527 1.93582 1.76810 1.49701 1.75840 1.93572 1.46022 1.79504 1.77313 1.55187 1.20130 1.79127 1.30114 1.21536 0.90383 0.94325 0.91734 0.87747 1.24366 1.03337 0.97971 0.95814 1.23494 0.86265 0.99315 0.88203 1.86519 1.13403 1.41810 1.90724 1.21419 0.74430 0.77620 0.88652 1.93184 1.35625 1.90269 1.96789 1.93185 1.70825 1.55984 1.96607 1.93216 1.94360 1.68178 1.60607 1.23663 1.00075 0.97746 0.94902 1.24797 1.02047 0.95147 0.96320 1.21023 0.87742 1.03524 1.05464 1.84262 0.93656 1.07293 1.68248 0.87314 0.86992 0.87614 0.86909 0.76516 1.20563 1.17663 0.72752 0.85584 0.87541 0.74095 0.86763 0.84991 0.88485 0.87710 0.88989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 1.15 8.34 71.23 0.59 1.75 16 2 C -0.18 0.63 6.11 24.59 0.15 0.79 16 3 C -0.09 -0.16 4.63 -20.92 -0.10 -0.26 16 4 C -0.09 -0.29 1.55 71.23 0.11 -0.18 16 5 O -0.54 -2.56 12.94 -148.98 -1.93 -4.49 16 6 Si 0.72 -1.88 26.16 68.60 1.79 -0.09 16 7 C -0.69 -2.61 5.83 21.22 0.12 -2.48 16 8 S 2.71 17.40 5.23 -56.49 -0.30 17.10 16 9 O -0.97 -12.33 14.55 -128.00 -1.86 -14.20 16 10 O -0.97 -9.88 15.01 -128.00 -1.92 -11.80 16 11 N -1.08 0.00 5.68 -167.19 -0.95 -0.95 16 12 C 0.13 -0.19 4.35 45.52 0.20 0.00 16 13 H 0.10 -0.14 4.12 -2.39 -0.01 -0.15 16 14 C -0.18 0.47 7.15 31.12 0.22 0.70 16 15 C 0.07 -0.22 1.36 -10.27 -0.01 -0.23 16 16 O -0.52 2.19 12.01 -148.98 -1.79 0.40 16 17 C 0.43 -0.11 2.85 71.98 0.21 0.10 16 18 F -0.18 -0.12 15.76 44.97 0.71 0.59 16 19 F -0.18 -0.15 16.65 44.97 0.75 0.60 16 20 F -0.18 -0.44 17.18 44.97 0.77 0.33 16 21 C -0.13 0.53 7.05 31.12 0.22 0.75 16 22 C -0.06 -0.06 6.49 24.59 0.16 0.10 16 23 C -0.12 0.13 9.10 71.24 0.65 0.78 16 24 S 0.20 -0.67 23.31 -56.49 -1.32 -1.99 16 25 H 0.11 -1.58 8.14 -2.39 -0.02 -1.60 16 26 H 0.11 -1.73 6.45 -2.39 -0.02 -1.75 16 27 H 0.11 -1.48 4.66 -2.38 -0.01 -1.49 16 28 H 0.11 0.75 3.36 -2.39 -0.01 0.74 16 29 H 0.39 -2.21 7.17 -74.06 -0.53 -2.74 16 30 H -0.28 -1.13 7.11 99.48 0.71 -0.43 16 31 H -0.25 0.44 7.11 99.48 0.71 1.15 16 32 H 0.43 -1.06 7.54 -96.75 -0.73 -1.79 16 33 H 0.13 -0.56 7.13 -2.38 -0.02 -0.58 16 34 H 0.11 -0.30 8.14 -2.39 -0.02 -0.32 16 35 H 0.41 -3.86 8.42 -74.06 -0.62 -4.48 16 36 H 0.11 -0.63 8.14 -2.39 -0.02 -0.65 16 37 H 0.13 -0.89 7.89 -2.39 -0.02 -0.91 16 38 H 0.10 -0.04 8.14 -2.38 -0.02 -0.06 16 39 H 0.10 -0.64 8.14 -2.39 -0.02 -0.66 16 40 H 0.09 -0.02 6.23 -2.38 -0.01 -0.04 16 Total: 0.00 -24.26 347.17 -4.18 -28.44 By element: Atomic # 1 Polarization: -15.09 SS G_CDS: -0.66 Total: -15.75 kcal Atomic # 6 Polarization: -0.71 SS G_CDS: 2.52 Total: 1.81 kcal Atomic # 7 Polarization: 0.00 SS G_CDS: -0.95 Total: -0.95 kcal Atomic # 8 Polarization: -22.59 SS G_CDS: -7.50 Total: -30.08 kcal Atomic # 9 Polarization: -0.71 SS G_CDS: 2.23 Total: 1.52 kcal Atomic # 14 Polarization: -1.88 SS G_CDS: 1.79 Total: -0.09 kcal Atomic # 16 Polarization: 16.72 SS G_CDS: -1.61 Total: 15.11 kcal Total: -24.26 -4.18 -28.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_17047582_15065288.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -202.305 kcal (2) G-P(sol) polarization free energy of solvation -24.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -226.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -230.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds