Wall clock time and date at job start Fri Mar 5 2021 23:13:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86301 * 109.47342 * 2 1 4 4 C 1.50705 * 109.47074 * 119.99971 * 2 1 3 5 5 C 1.38220 * 119.99595 * 76.11048 * 4 2 1 6 6 S 1.76200 * 120.00167 * 0.28441 * 5 4 2 7 7 O 1.42101 * 106.39901 * 176.99537 * 6 5 4 8 8 O 1.42099 * 106.39854 * 309.91085 * 6 5 4 9 9 N 1.65599 * 107.21852 * 63.45400 * 6 5 4 10 10 C 1.46489 * 120.00117 * 63.55106 * 9 6 5 11 11 H 1.09004 * 112.85340 * 346.31919 * 10 9 6 12 12 C 1.53781 * 113.61673 * 117.62530 * 10 9 6 13 13 C 1.53777 * 87.08448 * 89.11647 * 12 10 9 14 14 O 1.42909 * 113.68787 * 270.87798 * 13 12 10 15 15 C 1.52997 * 113.61837 * 139.98697 * 13 12 10 16 16 F 1.39903 * 109.46776 * 322.50114 * 15 13 12 17 17 F 1.39896 * 109.47520 * 82.49849 * 15 13 12 18 18 F 1.39899 * 109.47270 * 202.50283 * 15 13 12 19 19 C 1.53779 * 87.08269 * 25.43274 * 13 12 10 20 20 C 1.38251 * 119.99507 * 180.02562 * 5 4 2 21 21 C 1.38211 * 120.00201 * 359.97438 * 20 5 4 22 22 C 1.38254 * 120.00329 * 359.97438 * 21 20 5 23 23 C 1.38218 * 119.99582 * 359.97231 * 22 21 20 24 24 H 0.96700 * 113.99315 * 64.90473 * 1 2 3 25 25 H 1.09001 * 109.47454 * 239.99527 * 2 1 3 26 26 H 1.48500 * 109.99809 * 60.00065 * 3 2 1 27 27 H 1.48501 * 110.00027 * 181.31268 * 3 2 1 28 28 H 0.96998 * 119.99427 * 243.54989 * 9 6 5 29 29 H 1.08997 * 113.61971 * 203.66639 * 12 10 9 30 30 H 1.09008 * 113.61429 * 334.56433 * 12 10 9 31 31 H 0.96706 * 113.99569 * 277.52750 * 14 13 12 32 32 H 1.08990 * 113.62166 * 220.02292 * 19 13 12 33 33 H 1.08997 * 113.61112 * 89.11255 * 19 13 12 34 34 H 1.08005 * 119.99861 * 179.97438 * 20 5 4 35 35 H 1.08008 * 120.00164 * 179.97438 * 21 20 5 36 36 H 1.08000 * 120.00550 * 179.97438 * 22 21 20 37 37 H 1.07996 * 119.99600 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 1.8907 -2.0905 1.2966 6 16 1.2587 -3.0193 -0.0607 7 8 1.4161 -4.3892 0.2827 8 8 0.0042 -2.4407 -0.3933 9 7 2.2582 -2.7430 -1.3517 10 6 3.6599 -3.1651 -1.2963 11 1 3.9838 -3.4267 -0.2889 12 6 4.0291 -4.2162 -2.3564 13 6 4.3642 -3.0417 -3.2908 14 8 3.2504 -2.5845 -4.0606 15 6 5.6178 -3.2705 -4.1376 16 9 6.5759 -3.9505 -3.3780 17 9 5.2876 -4.0334 -5.2628 18 9 6.1362 -2.0370 -4.5461 19 6 4.6204 -2.2091 -2.0235 20 6 2.3511 -2.7421 2.4257 21 6 2.8523 -2.0138 3.4880 22 6 2.8939 -0.6334 3.4214 23 6 2.4347 0.0181 2.2922 24 1 -0.3932 0.3747 -0.8000 25 1 1.7924 -0.5139 -0.8899 26 1 1.5616 2.4678 1.2085 27 1 3.5347 1.7702 -0.0320 28 1 1.9155 -2.3015 -2.1445 29 1 4.8949 -4.8216 -2.0882 30 1 3.1815 -4.8136 -2.6927 31 1 3.0843 -3.1042 -4.8590 32 1 4.2503 -1.1862 -2.0908 33 1 5.6478 -2.2658 -1.6641 34 1 2.3190 -3.8205 2.4776 35 1 3.2116 -2.5229 4.3702 36 1 3.2852 -0.0642 4.2516 37 1 2.4668 1.0963 2.2404 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_40_17047582_2726874.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 5 2021 23:13:29 Heat of formation + Delta-G solvation = -230.526895 kcal Electronic energy + Delta-G solvation = -31459.178044 eV Core-core repulsion = 26495.952772 eV Total energy + Delta-G solvation = -4963.225273 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 354.063 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -51.20893 -48.75477 -48.68877 -41.08456 -40.69495 -38.50453 -37.41600 -36.97394 -36.57858 -33.73635 -32.96445 -32.52189 -28.57110 -27.12357 -26.95225 -24.52833 -24.12940 -22.75139 -21.32108 -20.83358 -19.99917 -19.50388 -19.43180 -19.02524 -18.57110 -18.27890 -17.50497 -17.09023 -16.98194 -16.72919 -16.11364 -15.98642 -15.70788 -15.58037 -15.33966 -15.20360 -15.13325 -14.98966 -14.88098 -14.84638 -14.75498 -14.26114 -14.21292 -13.98899 -13.92455 -13.57841 -13.26727 -13.18728 -13.15906 -13.08629 -12.85207 -12.63097 -12.18608 -12.16384 -11.92516 -11.75439 -11.16683 -10.70803 -10.57955 -10.25269 -10.15545 -4.97786 -0.77106 -0.37761 -0.00233 1.18901 1.55196 1.60372 1.79266 1.88819 2.26534 2.46842 2.59363 2.62139 2.72221 2.88410 3.21275 3.28077 3.40787 3.46357 3.55630 3.62748 3.77524 3.93302 3.96442 4.00557 4.14279 4.23108 4.29217 4.46435 4.51567 4.53574 4.66457 4.75195 4.85459 4.88128 5.04423 5.09936 5.16297 5.62923 5.98617 6.33145 6.90191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.539 6.539 2 C -0.125 4.125 3 Si 0.779 3.221 4 C 0.013 3.987 5 C -0.668 4.668 6 S 2.703 3.297 7 O -0.984 6.984 8 O -0.953 6.953 9 N -1.086 6.086 10 C 0.133 3.867 11 H 0.127 0.873 12 C -0.169 4.169 13 C 0.068 3.932 14 O -0.516 6.516 15 C 0.431 3.569 16 F -0.177 7.177 17 F -0.187 7.187 18 F -0.185 7.185 19 C -0.127 4.127 20 C -0.034 4.034 21 C -0.134 4.134 22 C -0.058 4.058 23 C -0.163 4.163 24 H 0.401 0.599 25 H 0.092 0.908 26 H -0.287 1.287 27 H -0.271 1.271 28 H 0.432 0.568 29 H 0.128 0.872 30 H 0.100 0.900 31 H 0.405 0.595 32 H 0.109 0.891 33 H 0.134 0.866 34 H 0.155 0.845 35 H 0.164 0.836 36 H 0.160 0.840 37 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.624 2.717 -0.750 4.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.349 6.349 2 C -0.234 4.234 3 Si 0.682 3.318 4 C 0.012 3.988 5 C -0.755 4.755 6 S 2.793 3.207 7 O -0.974 6.974 8 O -0.943 6.943 9 N -0.848 5.848 10 C 0.024 3.976 11 H 0.145 0.855 12 C -0.208 4.208 13 C 0.024 3.976 14 O -0.326 6.326 15 C 0.377 3.623 16 F -0.159 7.159 17 F -0.169 7.169 18 F -0.166 7.166 19 C -0.166 4.166 20 C -0.053 4.053 21 C -0.153 4.153 22 C -0.076 4.076 23 C -0.181 4.181 24 H 0.252 0.748 25 H 0.109 0.891 26 H -0.214 1.214 27 H -0.197 1.197 28 H 0.272 0.728 29 H 0.146 0.854 30 H 0.119 0.881 31 H 0.258 0.742 32 H 0.127 0.873 33 H 0.152 0.848 34 H 0.172 0.828 35 H 0.182 0.818 36 H 0.178 0.822 37 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 3.478 2.846 0.818 4.567 hybrid contribution 0.563 -0.438 -0.519 0.882 sum 4.040 2.408 0.299 4.713 Atomic orbital electron populations 1.86600 1.15081 1.86867 1.46317 1.25385 0.88048 1.13303 0.96657 0.93853 0.77939 0.74802 0.85253 1.19226 0.92921 0.91755 0.94922 1.30769 1.19217 1.06203 1.19346 1.01560 0.72936 0.73048 0.73137 1.93560 1.86521 1.32986 1.84350 1.93659 1.39097 1.78536 1.82993 1.55267 1.21239 1.76052 1.32284 1.21537 0.80171 0.94997 1.00846 0.85545 1.24305 1.05031 0.96504 0.95007 1.23616 0.83107 1.00799 0.90094 1.86510 1.45293 1.59165 1.41591 1.21535 0.87471 0.73837 0.79463 1.93183 1.66807 1.80389 1.75495 1.93180 1.92335 1.76571 1.54809 1.93208 1.88637 1.43515 1.91255 1.23705 1.02565 1.00760 0.89597 1.21348 0.91246 1.01458 0.91282 1.21730 0.99632 0.94217 0.99675 1.21826 0.93331 0.95374 0.97092 1.21385 1.01912 1.00115 0.94736 0.74794 0.89068 1.21432 1.19694 0.72808 0.85421 0.88118 0.74242 0.87291 0.84763 0.82758 0.81818 0.82215 0.85094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -1.64 10.52 -127.63 -1.34 -2.98 16 2 C -0.12 0.00 1.83 71.24 0.13 0.13 16 3 Si 0.78 -2.51 30.31 68.60 2.08 -0.43 16 4 C 0.01 0.05 5.28 -19.86 -0.10 -0.06 16 5 C -0.67 -2.56 5.85 22.27 0.13 -2.43 16 6 S 2.70 11.49 4.92 -56.49 -0.28 11.21 16 7 O -0.98 -8.94 16.76 -128.00 -2.15 -11.08 16 8 O -0.95 -9.32 15.07 -119.23 -1.80 -11.12 16 9 N -1.09 3.51 4.37 -167.20 -0.73 2.78 16 10 C 0.13 -0.78 4.44 45.52 0.20 -0.58 16 11 H 0.13 -1.02 8.05 -2.38 -0.02 -1.04 16 12 C -0.17 1.07 7.15 31.12 0.22 1.29 16 13 C 0.07 -0.40 1.36 -10.27 -0.01 -0.41 16 14 O -0.52 3.54 12.00 -148.98 -1.79 1.75 16 15 C 0.43 -0.97 2.85 71.98 0.21 -0.76 16 16 F -0.18 0.25 15.75 44.97 0.71 0.96 16 17 F -0.19 0.13 16.65 44.97 0.75 0.88 16 18 F -0.18 -0.16 17.18 44.97 0.77 0.61 16 19 C -0.13 0.98 7.05 31.12 0.22 1.19 16 20 C -0.03 -0.06 9.55 22.27 0.21 0.16 16 21 C -0.13 0.19 10.05 22.27 0.22 0.42 16 22 C -0.06 0.05 10.05 22.27 0.22 0.28 16 23 C -0.16 -0.43 8.66 22.27 0.19 -0.24 16 24 H 0.40 -2.53 8.86 -74.06 -0.66 -3.19 16 25 H 0.09 -0.44 5.77 -2.39 -0.01 -0.45 16 26 H -0.29 -0.93 6.71 99.48 0.67 -0.26 16 27 H -0.27 0.04 7.11 99.48 0.71 0.75 16 28 H 0.43 -2.45 7.23 -96.75 -0.70 -3.15 16 29 H 0.13 -1.05 7.13 -2.39 -0.02 -1.07 16 30 H 0.10 -0.58 8.14 -2.38 -0.02 -0.59 16 31 H 0.40 -4.68 8.42 -74.05 -0.62 -5.31 16 32 H 0.11 -0.92 8.14 -2.39 -0.02 -0.94 16 33 H 0.13 -1.39 7.88 -2.39 -0.02 -1.41 16 34 H 0.15 -0.07 7.34 -2.91 -0.02 -0.09 16 35 H 0.16 -1.19 8.06 -2.91 -0.02 -1.21 16 36 H 0.16 -1.05 8.06 -2.91 -0.02 -1.07 16 37 H 0.13 0.21 4.92 -2.91 -0.01 0.19 16 Total: 0.00 -24.55 329.46 -2.72 -27.27 By element: Atomic # 1 Polarization: -18.04 SS G_CDS: -0.79 Total: -18.83 kcal Atomic # 6 Polarization: -2.85 SS G_CDS: 1.84 Total: -1.01 kcal Atomic # 7 Polarization: 3.51 SS G_CDS: -0.73 Total: 2.78 kcal Atomic # 8 Polarization: -16.36 SS G_CDS: -7.07 Total: -23.43 kcal Atomic # 9 Polarization: 0.22 SS G_CDS: 2.23 Total: 2.45 kcal Atomic # 14 Polarization: -2.51 SS G_CDS: 2.08 Total: -0.43 kcal Atomic # 16 Polarization: 11.49 SS G_CDS: -0.28 Total: 11.21 kcal Total: -24.55 -2.72 -27.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_17047582_2726874.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -203.255 kcal (2) G-P(sol) polarization free energy of solvation -24.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -227.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -230.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds