Wall clock time and date at job start Fri Mar 5 2021 23:13:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42892 * 1 3 3 Si 1.86298 * 109.47605 * 2 1 4 4 C 1.50702 * 109.47242 * 120.00115 * 2 1 3 5 5 C 1.38236 * 119.99997 * 244.72727 * 4 2 1 6 6 C 1.38235 * 119.99991 * 179.73874 * 5 4 2 7 7 C 1.38236 * 119.99822 * 0.55171 * 6 5 4 8 8 S 1.76201 * 119.99927 * 179.72134 * 7 6 5 9 9 O 1.42100 * 106.40115 * 23.52130 * 8 7 6 10 10 O 1.42102 * 106.40335 * 156.44162 * 8 7 6 11 11 N 1.65599 * 107.21933 * 269.97801 * 8 7 6 12 12 C 1.46501 * 119.99675 * 65.00124 * 11 8 7 13 13 H 1.09002 * 112.85500 * 346.19644 * 12 11 8 14 14 C 1.53788 * 113.61430 * 117.50504 * 12 11 8 15 15 C 1.53779 * 87.08289 * 139.97949 * 14 12 11 16 16 O 1.42900 * 113.69103 * 89.12402 * 15 14 12 17 17 C 1.52996 * 113.61449 * 220.01641 * 15 14 12 18 18 F 1.39899 * 109.47308 * 157.49694 * 17 15 14 19 19 F 1.39900 * 109.47270 * 277.50231 * 17 15 14 20 20 F 1.39911 * 109.47012 * 37.49771 * 17 15 14 21 21 C 1.53779 * 87.08296 * 334.56620 * 15 14 12 22 22 C 1.38233 * 119.99933 * 359.70500 * 7 6 5 23 23 C 1.38229 * 120.00084 * 64.99665 * 4 2 1 24 24 H 0.96703 * 114.00176 * 60.00012 * 1 2 3 25 25 H 1.09000 * 109.47224 * 239.99764 * 2 1 3 26 26 H 1.48506 * 109.99834 * 298.68369 * 3 2 1 27 27 H 1.48502 * 110.00011 * 59.99633 * 3 2 1 28 28 H 1.07998 * 120.00048 * 359.97438 * 5 4 2 29 29 H 1.07998 * 120.00055 * 180.27232 * 6 5 4 30 30 H 0.96998 * 120.00684 * 245.00175 * 11 8 7 31 31 H 1.09006 * 113.61115 * 254.52944 * 14 12 11 32 32 H 1.09000 * 113.61443 * 25.42481 * 14 12 11 33 33 H 0.96704 * 113.99600 * 82.46326 * 16 15 14 34 34 H 1.09001 * 113.61374 * 270.88612 * 21 15 14 35 35 H 1.09000 * 113.61726 * 139.97951 * 21 15 14 36 36 H 1.08007 * 119.99752 * 179.97438 * 22 7 6 37 37 H 1.08003 * 120.00133 * 0.02562 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 2.6436 -0.0136 2.1885 6 6 3.0997 -0.6640 3.3198 7 6 2.8534 -2.0139 3.4875 8 16 3.4412 -2.8446 4.9259 9 8 3.6081 -1.8479 5.9249 10 8 2.6118 -3.9857 5.0974 11 7 4.9560 -3.4158 4.5776 12 6 6.0492 -2.4776 4.3109 13 1 5.7003 -1.4600 4.1350 14 6 7.2009 -2.5691 5.3259 15 6 8.1589 -2.3896 4.1365 16 8 8.4603 -1.0239 3.8431 17 6 9.4079 -3.2695 4.2173 18 9 9.9405 -3.4421 2.9352 19 9 10.3591 -2.6549 5.0386 20 9 9.0661 -4.5164 4.7519 21 6 7.0466 -2.9784 3.2529 22 6 2.1458 -2.7119 2.5269 23 6 1.6847 -2.0601 1.3984 24 1 -0.3934 0.4417 -0.7651 25 1 1.7923 -0.5139 -0.8900 26 1 1.5879 2.4585 -1.2243 27 1 1.5615 2.4679 1.2085 28 1 2.8404 1.0399 2.0551 29 1 3.6524 -0.1186 4.0704 30 1 5.1196 -4.3715 4.5500 31 1 7.2249 -1.7414 6.0348 32 1 7.2814 -3.5433 5.8083 33 1 9.1592 -0.6479 4.3957 34 1 7.0849 -4.0645 3.1685 35 1 6.9460 -2.4812 2.2881 36 1 1.9537 -3.7667 2.6577 37 1 1.1323 -2.6057 0.6476 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_40_17047602_13421422.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 5 2021 23:13:34 Heat of formation + Delta-G solvation = -242.797371 kcal Electronic energy + Delta-G solvation = -30090.696466 eV Core-core repulsion = 25126.939106 eV Total energy + Delta-G solvation = -4963.757360 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 354.063 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -51.19715 -48.74293 -48.67745 -40.92326 -40.61433 -38.41934 -37.84338 -37.04464 -36.76597 -33.62730 -33.16915 -32.20377 -28.55954 -27.25350 -27.05358 -24.18731 -23.87386 -22.83526 -21.41846 -20.74862 -19.99584 -19.49763 -19.40544 -19.14363 -18.66018 -18.49604 -17.47530 -17.07289 -16.91876 -16.53222 -16.21500 -15.83305 -15.76518 -15.53309 -15.43335 -15.37468 -15.12115 -14.86441 -14.84380 -14.62516 -14.54082 -14.43962 -14.30545 -14.03825 -13.96653 -13.82349 -13.35983 -13.30402 -13.23742 -12.87579 -12.86370 -12.60366 -12.41777 -11.91122 -11.88808 -11.82501 -11.21854 -10.67191 -10.58561 -10.34239 -10.13414 -4.97601 -0.77545 -0.37945 0.19813 1.21388 1.52158 1.56203 1.87687 1.91534 2.30293 2.48335 2.62767 2.66976 2.72096 2.93619 3.20492 3.24245 3.42828 3.49667 3.56782 3.66203 3.76367 3.82611 3.94094 4.18192 4.23979 4.34100 4.42149 4.51574 4.55831 4.60881 4.79004 4.84447 4.89760 4.93825 4.98673 5.18475 5.26992 5.69982 5.97718 6.36137 6.50302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.557 6.557 2 C -0.095 4.095 3 Si 0.765 3.235 4 C -0.027 4.027 5 C -0.143 4.143 6 C -0.023 4.023 7 C -0.679 4.679 8 S 2.711 3.289 9 O -0.978 6.978 10 O -0.986 6.986 11 N -1.090 6.090 12 C 0.140 3.860 13 H 0.137 0.863 14 C -0.172 4.172 15 C 0.068 3.932 16 O -0.516 6.516 17 C 0.433 3.567 18 F -0.184 7.184 19 F -0.186 7.186 20 F -0.178 7.178 21 C -0.123 4.123 22 C -0.025 4.025 23 C -0.123 4.123 24 H 0.399 0.601 25 H 0.107 0.893 26 H -0.284 1.284 27 H -0.297 1.297 28 H 0.152 0.848 29 H 0.161 0.839 30 H 0.432 0.568 31 H 0.107 0.893 32 H 0.117 0.883 33 H 0.405 0.595 34 H 0.125 0.875 35 H 0.112 0.888 36 H 0.152 0.848 37 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.679 1.453 -5.078 6.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.368 6.368 2 C -0.203 4.203 3 Si 0.670 3.330 4 C -0.027 4.027 5 C -0.161 4.161 6 C -0.042 4.042 7 C -0.767 4.767 8 S 2.802 3.198 9 O -0.968 6.968 10 O -0.976 6.976 11 N -0.851 5.851 12 C 0.032 3.968 13 H 0.154 0.846 14 C -0.212 4.212 15 C 0.023 3.977 16 O -0.325 6.325 17 C 0.378 3.622 18 F -0.166 7.166 19 F -0.168 7.168 20 F -0.159 7.159 21 C -0.162 4.162 22 C -0.044 4.044 23 C -0.141 4.141 24 H 0.250 0.750 25 H 0.125 0.875 26 H -0.211 1.211 27 H -0.225 1.225 28 H 0.170 0.830 29 H 0.179 0.821 30 H 0.270 0.730 31 H 0.125 0.875 32 H 0.135 0.865 33 H 0.258 0.742 34 H 0.143 0.857 35 H 0.131 0.869 36 H 0.170 0.830 37 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 2.637 1.958 -4.169 5.307 hybrid contribution -0.393 -0.376 -0.732 0.912 sum 2.245 1.582 -4.901 5.617 Atomic orbital electron populations 1.86540 1.18067 1.80807 1.51345 1.25134 0.84482 1.12157 0.98529 0.94141 0.90182 0.72030 0.76679 1.19886 0.93994 0.94288 0.94530 1.21373 0.99816 1.00869 0.94029 1.21152 0.94530 0.91939 0.96618 1.30853 1.16936 1.06715 1.22200 1.01189 0.72373 0.72650 0.73542 1.93584 1.85908 1.61566 1.55737 1.93578 1.66954 1.51109 1.85973 1.55264 1.24203 1.17470 1.88124 1.22192 0.85260 0.94046 0.95296 0.84564 1.24349 0.93383 1.06478 0.96982 1.23256 0.88409 0.83749 1.02308 1.86600 1.61285 1.20446 1.64128 1.21460 0.86722 0.80536 0.73487 1.93210 1.88122 1.95677 1.39543 1.93183 1.67871 1.82566 1.73161 1.93187 1.92019 1.44385 1.86317 1.23671 0.89606 1.03318 0.99633 1.21158 0.91308 1.00719 0.91253 1.21357 0.99836 0.94368 0.98587 0.75025 0.87529 1.21124 1.22493 0.83044 0.82134 0.72951 0.87493 0.86522 0.74249 0.85695 0.86950 0.83006 0.83756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.02 12.81 -148.98 -1.91 -1.89 16 2 C -0.09 0.33 2.79 71.24 0.20 0.52 16 3 Si 0.76 -3.38 29.84 68.60 2.05 -1.33 16 4 C -0.03 0.01 5.38 -19.87 -0.11 -0.10 16 5 C -0.14 0.20 8.67 22.27 0.19 0.40 16 6 C -0.02 0.03 9.26 22.27 0.21 0.23 16 7 C -0.68 -0.12 5.95 22.27 0.13 0.02 16 8 S 2.71 3.00 5.68 -56.49 -0.32 2.68 16 9 O -0.98 -6.50 17.04 -128.00 -2.18 -8.68 16 10 O -0.99 -7.47 17.28 -128.00 -2.21 -9.69 16 11 N -1.09 6.79 5.79 -167.17 -0.97 5.83 16 12 C 0.14 -1.03 4.29 45.52 0.20 -0.84 16 13 H 0.14 -1.24 7.78 -2.39 -0.02 -1.26 16 14 C -0.17 1.20 7.15 31.12 0.22 1.42 16 15 C 0.07 -0.42 1.36 -10.27 -0.01 -0.43 16 16 O -0.52 3.41 13.42 -148.98 -2.00 1.41 16 17 C 0.43 -1.02 2.85 71.98 0.21 -0.81 16 18 F -0.18 -0.14 17.18 44.97 0.77 0.63 16 19 F -0.19 0.17 16.65 44.97 0.75 0.92 16 20 F -0.18 0.25 15.75 44.97 0.71 0.96 16 21 C -0.12 1.05 7.05 31.12 0.22 1.27 16 22 C -0.03 0.00 9.52 22.27 0.21 0.21 16 23 C -0.12 0.00 9.69 22.27 0.22 0.21 16 24 H 0.40 -3.20 8.74 -74.06 -0.65 -3.85 16 25 H 0.11 -0.87 7.96 -2.39 -0.02 -0.89 16 26 H -0.28 0.02 7.11 99.48 0.71 0.72 16 27 H -0.30 -0.91 7.05 99.48 0.70 -0.21 16 28 H 0.15 -0.80 4.87 -2.91 -0.01 -0.81 16 29 H 0.16 -0.79 7.62 -2.91 -0.02 -0.81 16 30 H 0.43 -4.32 8.94 -96.74 -0.87 -5.18 16 31 H 0.11 -0.81 8.14 -2.38 -0.02 -0.83 16 32 H 0.12 -0.88 7.13 -2.39 -0.02 -0.89 16 33 H 0.40 -4.79 8.42 -74.05 -0.62 -5.42 16 34 H 0.12 -1.33 7.88 -2.39 -0.02 -1.34 16 35 H 0.11 -1.06 8.14 -2.39 -0.02 -1.08 16 36 H 0.15 -0.35 7.62 -2.91 -0.02 -0.37 16 37 H 0.14 -0.37 8.06 -2.91 -0.02 -0.39 16 Total: 0.00 -25.34 340.87 -4.35 -29.69 By element: Atomic # 1 Polarization: -21.71 SS G_CDS: -0.92 Total: -22.63 kcal Atomic # 6 Polarization: 0.22 SS G_CDS: 1.88 Total: 2.10 kcal Atomic # 7 Polarization: 6.79 SS G_CDS: -0.97 Total: 5.83 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: -8.30 Total: -18.85 kcal Atomic # 9 Polarization: 0.28 SS G_CDS: 2.23 Total: 2.51 kcal Atomic # 14 Polarization: -3.38 SS G_CDS: 2.05 Total: -1.33 kcal Atomic # 16 Polarization: 3.00 SS G_CDS: -0.32 Total: 2.68 kcal Total: -25.34 -4.35 -29.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_17047602_13421422.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -213.108 kcal (2) G-P(sol) polarization free energy of solvation -25.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -238.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -242.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds