Wall clock time and date at job start Fri Mar 5 2021 23:13:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42904 * 1 3 3 Si 1.86300 * 109.46605 * 2 1 4 4 C 1.50700 * 109.47174 * 119.99919 * 2 1 3 5 5 C 1.33384 * 125.20147 * 50.18436 * 4 2 1 6 6 S 1.76206 * 122.54187 * 0.03142 * 5 4 2 7 7 O 1.42098 * 106.39967 * 51.08672 * 6 5 4 8 8 O 1.42104 * 106.39653 * 278.16665 * 6 5 4 9 9 N 1.65599 * 107.21767 * 164.62984 * 6 5 4 10 10 C 1.46501 * 119.99849 * 63.50147 * 9 6 5 11 11 H 1.08997 * 112.85353 * 355.45569 * 10 9 6 12 12 C 1.53787 * 113.61147 * 126.65257 * 10 9 6 13 13 C 1.53788 * 87.07760 * 140.06294 * 12 10 9 14 14 O 1.42896 * 113.61308 * 89.20370 * 13 12 10 15 15 C 1.53001 * 113.61041 * 220.01693 * 13 12 10 16 16 F 1.39900 * 109.47098 * 60.00600 * 15 13 12 17 17 F 1.39902 * 109.46997 * 180.02562 * 15 13 12 18 18 F 1.39903 * 109.47425 * 300.00203 * 15 13 12 19 19 C 1.53777 * 87.08242 * 334.56531 * 13 12 10 20 20 C 1.38426 * 114.92030 * 179.75720 * 5 4 2 21 21 C 1.33392 * 114.92090 * 0.24832 * 20 5 4 22 22 S 1.75883 * 125.20178 * 230.32726 * 4 2 1 23 23 H 0.96696 * 114.00601 * 306.71312 * 1 2 3 24 24 H 1.09001 * 109.47220 * 240.00067 * 2 1 3 25 25 H 1.48500 * 109.99653 * 178.68008 * 3 2 1 26 26 H 1.48495 * 110.00191 * 299.99593 * 3 2 1 27 27 H 0.96996 * 119.99709 * 243.50009 * 9 6 5 28 28 H 1.08996 * 113.61354 * 254.60817 * 12 10 9 29 29 H 1.09004 * 113.61641 * 25.51807 * 12 10 9 30 30 H 0.96704 * 114.00230 * 179.97438 * 14 13 12 31 31 H 1.08995 * 113.61595 * 270.88416 * 19 13 12 32 32 H 1.08997 * 113.61067 * 139.97917 * 19 13 12 33 33 H 1.07999 * 122.53972 * 180.22890 * 20 5 4 34 34 H 1.07993 * 125.20087 * 179.97438 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7104 1.2305 5 6 1.5297 -1.9142 1.6412 6 16 0.3233 -2.8588 0.7710 7 8 0.7489 -2.9024 -0.5841 8 8 -0.9444 -2.3572 1.1718 9 7 0.4130 -4.4115 1.3396 10 6 0.0986 -4.6974 2.7416 11 1 -0.1026 -3.7972 3.3224 12 6 -0.9607 -5.7973 2.9234 13 6 -0.1162 -6.3059 4.1038 14 8 -0.4583 -5.7037 5.3537 15 6 -0.0298 -7.8314 4.1832 16 9 0.5503 -8.3273 3.0107 17 9 0.7540 -8.1975 5.2827 18 9 -1.3151 -8.3643 4.3292 19 6 1.0952 -5.6553 3.4154 20 6 2.1367 -2.3678 2.7996 21 6 3.0276 -1.5301 3.3324 22 16 3.1344 -0.0774 2.3465 23 1 -0.3934 0.5281 0.7081 24 1 1.7924 -0.5138 -0.8900 25 1 3.5345 1.7704 0.0321 26 1 1.5614 2.4679 -1.2085 27 1 0.6736 -5.1316 0.7443 28 1 -1.9388 -5.4172 3.2181 29 1 -1.0112 -6.4971 2.0892 30 1 0.0692 -6.0197 6.1001 31 1 1.6068 -6.3162 2.7157 32 1 1.7768 -5.1604 4.1072 33 1 1.9063 -3.3271 3.2389 34 1 3.5959 -1.7153 4.2319 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_40_17047602_14772022.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 5 2021 23:13:37 Heat of formation + Delta-G solvation = -231.177370 kcal Electronic energy + Delta-G solvation = -29351.227310 eV Core-core repulsion = 24477.126077 eV Total energy + Delta-G solvation = -4874.101233 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 360.019 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -51.22961 -48.77008 -48.71286 -41.04909 -39.62712 -38.28512 -37.72765 -36.93219 -36.79487 -33.71884 -31.83184 -28.62167 -27.56978 -27.18026 -24.55539 -23.98366 -21.75339 -21.45675 -20.60038 -19.96209 -19.52898 -19.43690 -19.21981 -18.48069 -17.93551 -17.46908 -17.10343 -16.81618 -16.49893 -16.28671 -15.93986 -15.57065 -15.49572 -15.44610 -15.20968 -15.14912 -14.89796 -14.87198 -14.69852 -14.41925 -14.34195 -14.07091 -13.96927 -13.82788 -13.30922 -13.25803 -13.15266 -12.94055 -12.78695 -12.72040 -12.60001 -12.14852 -11.81188 -11.61110 -11.30562 -10.97755 -10.67517 -10.18837 -9.78621 -5.20213 -0.79765 -0.52074 0.34148 0.62285 1.04032 1.14084 1.47838 1.50203 1.81008 1.90474 2.43369 2.58856 2.61920 2.65897 2.86224 3.16740 3.31670 3.36381 3.38655 3.51696 3.55430 3.83684 4.03504 4.13199 4.26019 4.31233 4.41876 4.50861 4.58895 4.73038 4.83410 4.87114 5.10526 5.13085 5.89603 6.35375 6.46197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.549 6.549 2 C -0.096 4.096 3 Si 0.757 3.243 4 C -0.120 4.120 5 C -0.666 4.666 6 S 2.723 3.277 7 O -0.988 6.988 8 O -0.967 6.967 9 N -1.095 6.095 10 C 0.132 3.868 11 H 0.137 0.863 12 C -0.139 4.139 13 C 0.070 3.930 14 O -0.517 6.517 15 C 0.433 3.567 16 F -0.176 7.176 17 F -0.183 7.183 18 F -0.187 7.187 19 C -0.163 4.163 20 C -0.104 4.104 21 C -0.200 4.200 22 S 0.180 5.820 23 H 0.403 0.597 24 H 0.128 0.872 25 H -0.245 1.245 26 H -0.260 1.260 27 H 0.432 0.568 28 H 0.100 0.900 29 H 0.122 0.878 30 H 0.406 0.594 31 H 0.125 0.875 32 H 0.126 0.874 33 H 0.175 0.825 34 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.718 1.701 6.385 8.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.358 6.358 2 C -0.206 4.206 3 Si 0.656 3.344 4 C -0.241 4.241 5 C -0.768 4.768 6 S 2.811 3.189 7 O -0.978 6.978 8 O -0.957 6.957 9 N -0.857 5.857 10 C 0.024 3.976 11 H 0.154 0.846 12 C -0.178 4.178 13 C 0.025 3.975 14 O -0.326 6.326 15 C 0.379 3.621 16 F -0.158 7.158 17 F -0.164 7.164 18 F -0.168 7.168 19 C -0.202 4.202 20 C -0.131 4.131 21 C -0.336 4.336 22 S 0.445 5.555 23 H 0.254 0.746 24 H 0.145 0.855 25 H -0.170 1.170 26 H -0.185 1.185 27 H 0.270 0.730 28 H 0.118 0.882 29 H 0.140 0.860 30 H 0.259 0.741 31 H 0.144 0.856 32 H 0.144 0.856 33 H 0.192 0.808 34 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 5.115 4.004 4.701 8.018 hybrid contribution 0.111 -2.938 0.195 2.947 sum 5.226 1.066 4.896 7.240 Atomic orbital electron populations 1.86559 1.16180 1.75698 1.57331 1.25410 0.86133 1.13712 0.95320 0.93921 0.79885 0.72852 0.87771 1.25075 1.00860 0.97226 1.00925 1.29720 1.23974 1.09815 1.13303 1.00965 0.73462 0.72268 0.72175 1.93542 1.83581 1.86502 1.34217 1.93573 1.39316 1.79418 1.83356 1.55336 1.85017 1.26041 1.19284 1.22310 0.95667 0.99090 0.80526 0.84568 1.23766 1.00334 0.98850 0.94845 1.23188 1.01876 0.83700 0.88706 1.86641 1.64518 1.65274 1.16163 1.21414 0.73485 0.93489 0.73737 1.93187 1.84513 1.89587 1.48503 1.93188 1.75096 1.93450 1.54703 1.93212 1.39516 1.88683 1.95406 1.24375 0.96236 0.98796 1.00772 1.20075 0.97011 1.02571 0.93465 1.26320 1.04676 0.96923 1.05696 1.84362 1.36125 1.19476 1.15587 0.74589 0.85452 1.16999 1.18516 0.73040 0.88162 0.85977 0.74069 0.85639 0.85627 0.80841 0.77706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -2.66 10.93 -137.67 -1.50 -4.17 16 2 C -0.10 -0.28 2.17 71.24 0.15 -0.12 16 3 Si 0.76 -1.75 30.91 68.60 2.12 0.37 16 4 C -0.12 -0.19 5.78 24.59 0.14 -0.05 16 5 C -0.67 -1.06 5.72 21.22 0.12 -0.94 16 6 S 2.72 13.88 4.36 -56.49 -0.25 13.64 16 7 O -0.99 -12.02 17.15 -128.00 -2.19 -14.21 16 8 O -0.97 -10.09 16.98 -122.36 -2.08 -12.17 16 9 N -1.10 3.65 5.60 -167.18 -0.94 2.72 16 10 C 0.13 -0.78 2.65 45.52 0.12 -0.66 16 11 H 0.14 -0.90 7.32 -2.39 -0.02 -0.92 16 12 C -0.14 0.63 7.06 31.12 0.22 0.85 16 13 C 0.07 -0.42 1.36 -10.27 -0.01 -0.44 16 14 O -0.52 3.26 13.42 -148.98 -2.00 1.27 16 15 C 0.43 -1.00 2.85 71.98 0.21 -0.79 16 16 F -0.18 0.29 15.75 44.97 0.71 1.00 16 17 F -0.18 0.38 16.65 44.97 0.75 1.13 16 18 F -0.19 -0.41 17.18 44.97 0.77 0.36 16 19 C -0.16 1.64 6.50 31.12 0.20 1.84 16 20 C -0.10 0.44 9.23 21.22 0.20 0.63 16 21 C -0.20 1.24 11.23 66.72 0.75 1.99 16 22 S 0.18 -0.64 20.64 -56.49 -1.17 -1.81 16 23 H 0.40 -1.51 8.57 -74.06 -0.63 -2.15 16 24 H 0.13 0.71 7.68 -2.39 -0.02 0.70 16 25 H -0.25 0.08 7.11 99.48 0.71 0.78 16 26 H -0.26 -0.86 7.11 99.48 0.71 -0.15 16 27 H 0.43 -3.02 8.96 -96.75 -0.87 -3.89 16 28 H 0.10 -0.29 8.14 -2.39 -0.02 -0.31 16 29 H 0.12 -0.76 7.88 -2.39 -0.02 -0.78 16 30 H 0.41 -5.23 8.42 -74.05 -0.62 -5.85 16 31 H 0.13 -1.43 7.13 -2.39 -0.02 -1.45 16 32 H 0.13 -1.86 7.34 -2.39 -0.02 -1.88 16 33 H 0.17 -1.71 4.17 -2.91 -0.01 -1.73 16 34 H 0.21 -2.59 8.06 -2.91 -0.02 -2.61 16 Total: 0.00 -25.27 322.00 -4.53 -29.80 By element: Atomic # 1 Polarization: -19.38 SS G_CDS: -0.86 Total: -20.23 kcal Atomic # 6 Polarization: 0.22 SS G_CDS: 2.10 Total: 2.32 kcal Atomic # 7 Polarization: 3.65 SS G_CDS: -0.94 Total: 2.72 kcal Atomic # 8 Polarization: -21.51 SS G_CDS: -7.78 Total: -29.28 kcal Atomic # 9 Polarization: 0.26 SS G_CDS: 2.23 Total: 2.49 kcal Atomic # 14 Polarization: -1.75 SS G_CDS: 2.12 Total: 0.37 kcal Atomic # 16 Polarization: 13.24 SS G_CDS: -1.41 Total: 11.83 kcal Total: -25.27 -4.53 -29.80 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_17047602_14772022.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -201.380 kcal (2) G-P(sol) polarization free energy of solvation -25.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -226.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -231.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds