Wall clock time and date at job start Fri Mar 5 2021 23:13:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.33389 * 125.19861 * 2 1 4 4 C 1.50700 * 122.54618 * 359.97438 * 3 2 1 5 5 O 1.42897 * 109.46967 * 80.39720 * 4 3 2 6 6 Si 1.86304 * 109.46743 * 320.40453 * 4 3 2 7 7 C 1.38430 * 114.91516 * 180.20701 * 3 2 1 8 8 S 1.76204 * 122.53715 * 179.76234 * 7 3 2 9 9 O 1.42091 * 106.40227 * 150.92959 * 8 7 3 10 10 O 1.42101 * 106.40132 * 18.00773 * 8 7 3 11 11 N 1.65601 * 107.21654 * 264.47084 * 8 7 3 12 12 C 1.46500 * 120.00266 * 64.03201 * 11 8 7 13 13 H 1.08996 * 112.84966 * 15.43139 * 12 11 8 14 14 C 1.53782 * 113.61584 * 146.63148 * 12 11 8 15 15 C 1.53781 * 87.17353 * 140.01950 * 14 12 11 16 16 O 1.42900 * 113.60955 * 89.15610 * 15 14 12 17 17 C 1.52993 * 113.61599 * 220.06194 * 15 14 12 18 18 F 1.39895 * 109.47327 * 60.00028 * 17 15 14 19 19 F 1.39902 * 109.47109 * 180.02562 * 17 15 14 20 20 F 1.39903 * 109.47276 * 299.99647 * 17 15 14 21 21 C 1.53778 * 113.68822 * 244.16902 * 12 11 8 22 22 C 1.33384 * 114.92175 * 359.49904 * 7 3 2 23 23 C 1.50705 * 125.20264 * 180.28518 * 22 7 3 24 24 S 1.75877 * 109.59475 * 0.26714 * 22 7 3 25 25 H 1.09006 * 109.47077 * 185.89569 * 1 2 3 26 26 H 1.09001 * 109.46912 * 305.88742 * 1 2 3 27 27 H 1.08992 * 109.47544 * 65.89408 * 1 2 3 28 28 H 1.08989 * 109.47458 * 200.40197 * 4 3 2 29 29 H 0.96693 * 114.00526 * 304.64029 * 5 4 3 30 30 H 1.48494 * 109.99929 * 183.16440 * 6 4 3 31 31 H 1.48498 * 109.99941 * 304.48619 * 6 4 3 32 32 H 0.97001 * 119.99710 * 244.02858 * 11 8 7 33 33 H 1.08991 * 113.61287 * 254.61554 * 14 12 11 34 34 H 1.09005 * 113.61335 * 25.43448 * 14 12 11 35 35 H 0.96706 * 113.99645 * 180.02562 * 16 15 14 36 36 H 1.09003 * 113.61737 * 334.55355 * 21 12 11 37 37 H 1.09000 * 113.61904 * 105.45511 * 21 12 11 38 38 H 1.08998 * 109.47034 * 90.00097 * 23 22 7 39 39 H 1.08992 * 109.47263 * 209.99899 * 23 22 7 40 40 H 1.09004 * 109.46907 * 330.00361 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0900 0.0000 4 6 1.7051 2.4847 -0.0006 5 8 1.3163 2.8408 1.3276 6 14 0.2177 2.5465 -1.1207 7 6 3.6379 0.8429 -0.0045 8 16 4.8356 2.1353 -0.0115 9 8 5.9846 1.6212 0.6475 10 8 4.1590 3.3116 0.4100 11 7 5.2747 2.3881 -1.5881 12 6 4.2862 2.8711 -2.5555 13 1 3.3926 3.2765 -2.0809 14 6 4.8800 3.7892 -3.6369 15 6 3.9602 3.0744 -4.6409 16 8 2.6716 3.6792 -4.7675 17 6 4.6240 2.7986 -5.9914 18 9 5.7467 1.9857 -5.8019 19 9 3.7149 2.1500 -6.8341 20 9 5.0172 4.0085 -6.5736 21 6 3.9844 1.8696 -3.6827 22 6 3.9751 -0.4476 0.0024 23 6 5.3861 -0.9770 0.0056 24 16 2.5210 -1.4371 0.0076 25 1 -0.3633 -1.0223 0.1056 26 1 -0.3633 0.6024 0.8326 27 1 -0.3634 0.4197 -0.9380 28 1 2.4590 3.1857 -0.3587 29 1 0.6995 2.2187 1.7370 30 1 -0.3088 3.9332 -1.1898 31 1 0.5854 2.0744 -2.4797 32 1 6.1865 2.2164 -1.8711 33 1 4.6380 4.8425 -3.4962 34 1 5.9411 3.6192 -3.8194 35 1 2.0884 3.2338 -5.3973 36 1 4.8003 1.1739 -3.8789 37 1 3.0195 1.3733 -3.5793 38 1 5.7259 -1.0992 1.0340 39 1 5.4139 -1.9405 -0.5031 40 1 6.0390 -0.2739 -0.5117 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV m_40_17047602_15065288.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 5 2021 23:13:46 Heat of formation + Delta-G solvation = -227.029154 kcal Electronic energy + Delta-G solvation = -34699.709192 eV Core-core repulsion = 29514.712601 eV Total energy + Delta-G solvation = -5184.996591 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 388.050 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -51.33317 -48.88624 -48.77762 -41.26278 -40.37443 -38.50783 -37.12859 -37.03735 -36.90627 -34.47147 -33.87230 -31.10143 -28.79438 -28.07766 -27.45406 -26.06699 -24.20269 -23.28467 -21.75015 -20.95178 -20.41265 -20.02892 -19.62835 -19.53948 -19.00002 -18.68385 -17.96791 -17.61681 -17.02780 -16.64907 -16.56740 -16.17174 -16.02180 -15.70376 -15.64333 -15.60344 -15.33585 -15.24204 -14.98672 -14.95270 -14.85444 -14.74740 -14.56163 -14.49291 -14.33019 -14.18372 -14.05671 -13.75545 -13.69388 -13.51095 -13.28282 -13.07709 -12.94279 -12.92516 -12.83728 -12.71367 -12.17891 -12.05522 -11.74982 -11.61950 -11.52446 -10.86563 -10.35878 -10.10278 -9.60638 -4.93188 -0.84068 -0.52551 0.27486 0.58567 0.77487 1.28343 1.32187 1.59249 1.90386 2.00016 2.14782 2.40559 2.43468 2.57964 2.69012 3.05441 3.19157 3.20319 3.31150 3.36732 3.45205 3.60092 3.69657 3.88439 3.93939 4.00716 4.13407 4.15104 4.16716 4.17544 4.33774 4.36604 4.42317 4.51931 4.53122 4.61580 4.79169 4.83312 4.95397 5.11137 5.62957 5.90263 6.64899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.191 4.191 3 C -0.069 4.069 4 C -0.070 4.070 5 O -0.517 6.517 6 Si 0.638 3.362 7 C -0.680 4.680 8 S 2.698 3.302 9 O -0.948 6.948 10 O -0.933 6.933 11 N -1.104 6.104 12 C 0.140 3.860 13 H 0.125 0.875 14 C -0.121 4.121 15 C 0.062 3.938 16 O -0.508 6.508 17 C 0.438 3.562 18 F -0.173 7.173 19 F -0.181 7.181 20 F -0.172 7.172 21 C -0.174 4.174 22 C -0.049 4.049 23 C -0.111 4.111 24 S 0.169 5.831 25 H 0.091 0.909 26 H 0.093 0.907 27 H 0.092 0.908 28 H 0.137 0.863 29 H 0.369 0.631 30 H -0.241 1.241 31 H -0.250 1.250 32 H 0.423 0.577 33 H 0.108 0.892 34 H 0.118 0.882 35 H 0.393 0.607 36 H 0.116 0.884 37 H 0.097 0.903 38 H 0.103 0.897 39 H 0.084 0.916 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.155 -5.808 -1.690 6.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.309 4.309 3 C -0.080 4.080 4 C -0.183 4.183 5 O -0.322 6.322 6 Si 0.538 3.462 7 C -0.779 4.779 8 S 2.786 3.214 9 O -0.938 6.938 10 O -0.922 6.922 11 N -0.862 5.862 12 C 0.032 3.968 13 H 0.143 0.857 14 C -0.160 4.160 15 C 0.017 3.983 16 O -0.316 6.316 17 C 0.383 3.617 18 F -0.155 7.155 19 F -0.162 7.162 20 F -0.153 7.153 21 C -0.214 4.214 22 C -0.170 4.170 23 C -0.169 4.169 24 S 0.435 5.565 25 H 0.110 0.890 26 H 0.111 0.889 27 H 0.110 0.890 28 H 0.154 0.846 29 H 0.215 0.785 30 H -0.165 1.165 31 H -0.174 1.174 32 H 0.258 0.742 33 H 0.127 0.873 34 H 0.136 0.864 35 H 0.244 0.756 36 H 0.135 0.865 37 H 0.116 0.884 38 H 0.121 0.879 39 H 0.103 0.897 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.037 -5.680 -1.317 6.575 hybrid contribution 0.776 0.266 -1.171 1.430 sum -2.261 -5.415 -2.488 6.374 Atomic orbital electron populations 1.20344 0.87224 1.04035 1.03149 1.24367 1.00238 0.95319 1.11013 1.18678 0.90590 0.97053 1.01648 1.25440 1.07527 0.92562 0.92769 1.86672 1.67011 1.51327 1.27142 0.95101 0.86015 0.85116 0.79948 1.29465 1.11908 1.13243 1.23283 1.01922 0.73309 0.73991 0.72139 1.93620 1.47985 1.80852 1.71376 1.93607 1.74589 1.45034 1.78999 1.55619 1.19886 1.81931 1.28800 1.22068 0.92130 0.94447 0.88202 0.85742 1.23533 0.99166 1.02152 0.91128 1.23297 0.87483 0.98824 0.88677 1.86648 1.21885 1.56371 1.66654 1.21054 0.77690 0.74643 0.88289 1.93192 1.53577 1.73547 1.95141 1.93197 1.66846 1.81995 1.74178 1.93244 1.91233 1.44680 1.86157 1.24380 1.05715 0.96826 0.94494 1.24574 1.00812 0.95095 0.96565 1.20877 0.88146 1.02410 1.05502 1.84400 0.94874 1.07984 1.69199 0.89041 0.88875 0.89050 0.84607 0.78480 1.16546 1.17419 0.74156 0.87323 0.86395 0.75587 0.86546 0.88397 0.87894 0.89728 0.89191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 0.42 8.25 36.01 0.30 0.71 16 2 C -0.19 0.28 6.13 -36.00 -0.22 0.06 16 3 C -0.07 -0.04 4.74 -106.25 -0.50 -0.54 16 4 C -0.07 -0.11 2.02 36.01 0.07 -0.03 16 5 O -0.52 -1.17 12.84 -35.23 -0.45 -1.63 16 6 Si 0.64 -0.28 27.01 -169.99 -4.59 -4.87 16 7 C -0.68 -0.62 5.84 -41.21 -0.24 -0.86 16 8 S 2.70 4.79 5.21 -107.50 -0.56 4.23 16 9 O -0.95 -3.42 15.44 -57.17 -0.88 -4.30 16 10 O -0.93 -4.57 14.03 -57.17 -0.80 -5.37 16 11 N -1.10 1.86 5.80 -4.20 -0.02 1.83 16 12 C 0.14 -0.21 4.35 -67.12 -0.29 -0.50 16 13 H 0.12 -0.09 6.20 -51.93 -0.32 -0.41 16 14 C -0.12 0.24 7.04 -25.92 -0.18 0.06 16 15 C 0.06 -0.10 1.36 -89.72 -0.12 -0.22 16 16 O -0.51 0.55 13.42 -35.23 -0.47 0.08 16 17 C 0.44 -0.19 2.86 37.15 0.11 -0.08 16 18 F -0.17 0.07 15.76 2.25 0.04 0.11 16 19 F -0.18 0.00 16.65 2.25 0.04 0.04 16 20 F -0.17 -0.21 17.18 2.25 0.04 -0.17 16 21 C -0.17 0.45 7.16 -25.83 -0.18 0.26 16 22 C -0.05 0.02 6.49 -36.00 -0.23 -0.22 16 23 C -0.11 0.18 9.12 36.01 0.33 0.51 16 24 S 0.17 -0.27 23.31 -107.50 -2.51 -2.78 16 25 H 0.09 -0.53 8.14 -51.93 -0.42 -0.95 16 26 H 0.09 -0.60 6.57 -51.93 -0.34 -0.94 16 27 H 0.09 -0.48 4.63 -51.93 -0.24 -0.72 16 28 H 0.14 0.40 3.30 -51.94 -0.17 0.23 16 29 H 0.37 -0.87 7.76 45.56 0.35 -0.52 16 30 H -0.24 -0.70 7.11 56.52 0.40 -0.30 16 31 H -0.25 -0.09 7.11 56.52 0.40 0.31 16 32 H 0.42 -1.73 8.93 -34.47 -0.31 -2.04 16 33 H 0.11 -0.20 8.14 -51.93 -0.42 -0.62 16 34 H 0.12 -0.43 7.88 -51.93 -0.41 -0.84 16 35 H 0.39 -1.60 8.43 45.56 0.38 -1.22 16 36 H 0.12 -0.43 7.13 -51.93 -0.37 -0.80 16 37 H 0.10 -0.27 8.14 -51.93 -0.42 -0.70 16 38 H 0.10 -0.14 8.14 -51.93 -0.42 -0.57 16 39 H 0.08 -0.31 8.14 -51.93 -0.42 -0.73 16 40 H 0.09 -0.18 6.48 -51.93 -0.34 -0.52 16 LS Contribution 354.24 15.07 5.34 5.34 Total: 0.00 -10.59 354.24 -9.09 -19.68 By element: Atomic # 1 Polarization: -8.27 SS G_CDS: -3.07 Total: -11.35 kcal Atomic # 6 Polarization: 0.33 SS G_CDS: -1.18 Total: -0.85 kcal Atomic # 7 Polarization: 1.86 SS G_CDS: -0.02 Total: 1.83 kcal Atomic # 8 Polarization: -8.60 SS G_CDS: -2.61 Total: -11.21 kcal Atomic # 9 Polarization: -0.13 SS G_CDS: 0.11 Total: -0.02 kcal Atomic # 14 Polarization: -0.28 SS G_CDS: -4.59 Total: -4.87 kcal Atomic # 16 Polarization: 4.52 SS G_CDS: -3.07 Total: 1.45 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -10.59 -9.09 -19.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_17047602_15065288.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -207.347 kcal (2) G-P(sol) polarization free energy of solvation -10.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -217.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -227.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.80 seconds