Wall clock time and date at job start Fri Mar 5 2021 23:13:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.33389 * 125.19861 * 2 1 4 4 C 1.50700 * 122.54618 * 359.97438 * 3 2 1 5 5 O 1.42897 * 109.46967 * 80.39720 * 4 3 2 6 6 Si 1.86304 * 109.46743 * 320.40453 * 4 3 2 7 7 C 1.38430 * 114.91516 * 180.20701 * 3 2 1 8 8 S 1.76204 * 122.53715 * 179.76234 * 7 3 2 9 9 O 1.42091 * 106.40227 * 150.92959 * 8 7 3 10 10 O 1.42101 * 106.40132 * 18.00773 * 8 7 3 11 11 N 1.65601 * 107.21654 * 264.47084 * 8 7 3 12 12 C 1.46500 * 120.00266 * 64.03201 * 11 8 7 13 13 H 1.08996 * 112.84966 * 15.43139 * 12 11 8 14 14 C 1.53782 * 113.61584 * 146.63148 * 12 11 8 15 15 C 1.53781 * 87.17353 * 140.01950 * 14 12 11 16 16 O 1.42900 * 113.60955 * 89.15610 * 15 14 12 17 17 C 1.52993 * 113.61599 * 220.06194 * 15 14 12 18 18 F 1.39895 * 109.47327 * 60.00028 * 17 15 14 19 19 F 1.39902 * 109.47109 * 180.02562 * 17 15 14 20 20 F 1.39903 * 109.47276 * 299.99647 * 17 15 14 21 21 C 1.53778 * 113.68822 * 244.16902 * 12 11 8 22 22 C 1.33384 * 114.92175 * 359.49904 * 7 3 2 23 23 C 1.50705 * 125.20264 * 180.28518 * 22 7 3 24 24 S 1.75877 * 109.59475 * 0.26714 * 22 7 3 25 25 H 1.09006 * 109.47077 * 185.89569 * 1 2 3 26 26 H 1.09001 * 109.46912 * 305.88742 * 1 2 3 27 27 H 1.08992 * 109.47544 * 65.89408 * 1 2 3 28 28 H 1.08989 * 109.47458 * 200.40197 * 4 3 2 29 29 H 0.96693 * 114.00526 * 304.64029 * 5 4 3 30 30 H 1.48494 * 109.99929 * 183.16440 * 6 4 3 31 31 H 1.48498 * 109.99941 * 304.48619 * 6 4 3 32 32 H 0.97001 * 119.99710 * 244.02858 * 11 8 7 33 33 H 1.08991 * 113.61287 * 254.61554 * 14 12 11 34 34 H 1.09005 * 113.61335 * 25.43448 * 14 12 11 35 35 H 0.96706 * 113.99645 * 180.02562 * 16 15 14 36 36 H 1.09003 * 113.61737 * 334.55355 * 21 12 11 37 37 H 1.09000 * 113.61904 * 105.45511 * 21 12 11 38 38 H 1.08998 * 109.47034 * 90.00097 * 23 22 7 39 39 H 1.08992 * 109.47263 * 209.99899 * 23 22 7 40 40 H 1.09004 * 109.46907 * 330.00361 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0900 0.0000 4 6 1.7051 2.4847 -0.0006 5 8 1.3163 2.8408 1.3276 6 14 0.2177 2.5465 -1.1207 7 6 3.6379 0.8429 -0.0045 8 16 4.8356 2.1353 -0.0115 9 8 5.9846 1.6212 0.6475 10 8 4.1590 3.3116 0.4100 11 7 5.2747 2.3881 -1.5881 12 6 4.2862 2.8711 -2.5555 13 1 3.3926 3.2765 -2.0809 14 6 4.8800 3.7892 -3.6369 15 6 3.9602 3.0744 -4.6409 16 8 2.6716 3.6792 -4.7675 17 6 4.6240 2.7986 -5.9914 18 9 5.7467 1.9857 -5.8019 19 9 3.7149 2.1500 -6.8341 20 9 5.0172 4.0085 -6.5736 21 6 3.9844 1.8696 -3.6827 22 6 3.9751 -0.4476 0.0024 23 6 5.3861 -0.9770 0.0056 24 16 2.5210 -1.4371 0.0076 25 1 -0.3633 -1.0223 0.1056 26 1 -0.3633 0.6024 0.8326 27 1 -0.3634 0.4197 -0.9380 28 1 2.4590 3.1857 -0.3587 29 1 0.6995 2.2187 1.7370 30 1 -0.3088 3.9332 -1.1898 31 1 0.5854 2.0744 -2.4797 32 1 6.1865 2.2164 -1.8711 33 1 4.6380 4.8425 -3.4962 34 1 5.9411 3.6192 -3.8194 35 1 2.0884 3.2338 -5.3973 36 1 4.8003 1.1739 -3.8789 37 1 3.0195 1.3733 -3.5793 38 1 5.7259 -1.0992 1.0340 39 1 5.4139 -1.9405 -0.5031 40 1 6.0390 -0.2739 -0.5117 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_40_17047602_15065288.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 5 2021 23:13:45 Heat of formation + Delta-G solvation = -233.478317 kcal Electronic energy + Delta-G solvation = -34699.988848 eV Core-core repulsion = 29514.712601 eV Total energy + Delta-G solvation = -5185.276247 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 388.050 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -51.31557 -48.85429 -48.79160 -41.13543 -40.31479 -38.67693 -37.16242 -37.11365 -36.96460 -34.31846 -33.79209 -30.88886 -28.73007 -28.05352 -27.27869 -25.91743 -24.13743 -23.24237 -21.63182 -20.94814 -20.36342 -19.99201 -19.61097 -19.51299 -18.99643 -18.67678 -17.96910 -17.52894 -17.00245 -16.66584 -16.48369 -16.11665 -16.00768 -15.70656 -15.61691 -15.58214 -15.28455 -15.23118 -14.97638 -14.95466 -14.68113 -14.67959 -14.50158 -14.41902 -14.17449 -14.05349 -13.98901 -13.71023 -13.56528 -13.43240 -13.40172 -13.05349 -12.94222 -12.79059 -12.74965 -12.65178 -12.12144 -12.06678 -11.74892 -11.59791 -11.41048 -10.76158 -10.38882 -9.98001 -9.49937 -4.92073 -0.89442 -0.45099 0.39812 0.67655 0.82080 1.27185 1.38090 1.59153 1.90944 1.98666 2.30590 2.48270 2.53153 2.54525 2.76183 3.09307 3.25285 3.29048 3.39733 3.46284 3.55781 3.72134 3.81193 4.02132 4.09064 4.16650 4.30057 4.32534 4.37362 4.50380 4.55572 4.56786 4.62010 4.68323 4.70167 4.87672 4.96528 5.01962 5.06257 5.26803 5.84443 6.17429 6.80399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.183 4.183 3 C -0.091 4.091 4 C -0.088 4.088 5 O -0.543 6.543 6 Si 0.725 3.275 7 C -0.690 4.690 8 S 2.705 3.295 9 O -0.974 6.974 10 O -0.972 6.972 11 N -1.091 6.091 12 C 0.133 3.867 13 H 0.113 0.887 14 C -0.124 4.124 15 C 0.064 3.936 16 O -0.522 6.522 17 C 0.439 3.561 18 F -0.172 7.172 19 F -0.183 7.183 20 F -0.183 7.183 21 C -0.166 4.166 22 C -0.060 4.060 23 C -0.118 4.118 24 S 0.202 5.798 25 H 0.111 0.889 26 H 0.114 0.886 27 H 0.104 0.896 28 H 0.116 0.884 29 H 0.386 0.614 30 H -0.295 1.295 31 H -0.257 1.257 32 H 0.434 0.566 33 H 0.103 0.897 34 H 0.135 0.865 35 H 0.405 0.595 36 H 0.131 0.869 37 H 0.103 0.897 38 H 0.097 0.903 39 H 0.106 0.894 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.990 -7.805 -2.256 9.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.301 4.301 3 C -0.102 4.102 4 C -0.199 4.199 5 O -0.351 6.351 6 Si 0.628 3.372 7 C -0.792 4.792 8 S 2.796 3.204 9 O -0.964 6.964 10 O -0.962 6.962 11 N -0.852 5.852 12 C 0.025 3.975 13 H 0.131 0.869 14 C -0.163 4.163 15 C 0.019 3.981 16 O -0.331 6.331 17 C 0.384 3.616 18 F -0.154 7.154 19 F -0.165 7.165 20 F -0.165 7.165 21 C -0.205 4.205 22 C -0.181 4.181 23 C -0.176 4.176 24 S 0.469 5.531 25 H 0.130 0.870 26 H 0.132 0.868 27 H 0.121 0.879 28 H 0.133 0.867 29 H 0.235 0.765 30 H -0.223 1.223 31 H -0.182 1.182 32 H 0.272 0.728 33 H 0.122 0.878 34 H 0.153 0.847 35 H 0.257 0.743 36 H 0.149 0.851 37 H 0.122 0.878 38 H 0.116 0.884 39 H 0.125 0.875 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.834 -7.693 -1.872 8.797 hybrid contribution 1.021 0.874 -0.999 1.675 sum -2.813 -6.820 -2.871 7.916 Atomic orbital electron populations 1.20646 0.84972 1.05778 1.04475 1.24777 1.01815 0.94800 1.08712 1.18603 0.90681 0.97013 1.03862 1.25656 1.08507 0.92901 0.92873 1.86614 1.67868 1.52628 1.27944 0.94207 0.83099 0.81784 0.78102 1.29249 1.11875 1.13189 1.24868 1.01316 0.72847 0.73642 0.72615 1.93577 1.49111 1.81141 1.72606 1.93569 1.75250 1.47131 1.80229 1.55270 1.20575 1.81810 1.27554 1.22095 0.91862 0.95291 0.88259 0.86911 1.23650 1.00171 1.01805 0.90721 1.23287 0.87297 0.99399 0.88087 1.86629 1.22271 1.57051 1.67181 1.21201 0.77667 0.74207 0.88522 1.93189 1.53598 1.73465 1.95126 1.93189 1.66912 1.81993 1.74370 1.93219 1.91373 1.45448 1.86429 1.24391 1.06603 0.96492 0.93036 1.24784 1.02050 0.95042 0.96235 1.20994 0.87559 1.03568 1.05504 1.84281 0.93598 1.07042 1.68196 0.87014 0.86782 0.87917 0.86730 0.76462 1.22273 1.18240 0.72751 0.87841 0.84729 0.74263 0.85095 0.87800 0.88426 0.87504 0.89183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 1.17 8.25 71.24 0.59 1.76 16 2 C -0.18 0.75 6.13 24.59 0.15 0.90 16 3 C -0.09 -0.11 4.74 -20.92 -0.10 -0.21 16 4 C -0.09 -0.37 2.02 71.24 0.14 -0.22 16 5 O -0.54 -3.17 12.84 -148.98 -1.91 -5.09 16 6 Si 0.73 -0.44 27.01 68.60 1.85 1.41 16 7 C -0.69 -1.71 5.84 21.22 0.12 -1.58 16 8 S 2.70 14.35 5.21 -56.49 -0.29 14.05 16 9 O -0.97 -8.74 15.44 -128.00 -1.98 -10.71 16 10 O -0.97 -12.20 14.03 -128.00 -1.80 -13.99 16 11 N -1.09 2.55 5.80 -167.20 -0.97 1.59 16 12 C 0.13 -0.29 4.35 45.52 0.20 -0.09 16 13 H 0.11 0.05 6.20 -2.39 -0.01 0.04 16 14 C -0.12 0.43 7.04 31.12 0.22 0.65 16 15 C 0.06 -0.19 1.36 -10.21 -0.01 -0.20 16 16 O -0.52 0.90 13.42 -148.98 -2.00 -1.10 16 17 C 0.44 -0.42 2.86 71.98 0.21 -0.22 16 18 F -0.17 0.23 15.76 44.97 0.71 0.94 16 19 F -0.18 0.05 16.65 44.97 0.75 0.80 16 20 F -0.18 -0.49 17.18 44.97 0.77 0.28 16 21 C -0.17 0.89 7.16 31.18 0.22 1.12 16 22 C -0.06 0.05 6.49 24.59 0.16 0.21 16 23 C -0.12 0.40 9.12 71.24 0.65 1.05 16 24 S 0.20 -0.95 23.31 -56.49 -1.32 -2.26 16 25 H 0.11 -1.65 8.14 -2.38 -0.02 -1.67 16 26 H 0.11 -1.74 6.57 -2.39 -0.02 -1.75 16 27 H 0.10 -1.33 4.63 -2.39 -0.01 -1.34 16 28 H 0.12 0.96 3.30 -2.39 -0.01 0.95 16 29 H 0.39 -1.71 7.76 -74.06 -0.57 -2.28 16 30 H -0.29 -2.35 7.11 99.48 0.71 -1.64 16 31 H -0.26 -0.04 7.11 99.48 0.71 0.67 16 32 H 0.43 -3.29 8.93 -96.75 -0.86 -4.16 16 33 H 0.10 -0.24 8.14 -2.39 -0.02 -0.26 16 34 H 0.13 -0.99 7.88 -2.38 -0.02 -1.00 16 35 H 0.40 -3.21 8.43 -74.05 -0.62 -3.84 16 36 H 0.13 -1.10 7.13 -2.39 -0.02 -1.12 16 37 H 0.10 -0.65 8.14 -2.39 -0.02 -0.67 16 38 H 0.10 -0.23 8.14 -2.39 -0.02 -0.25 16 39 H 0.11 -0.90 8.14 -2.39 -0.02 -0.92 16 40 H 0.09 -0.33 6.48 -2.38 -0.02 -0.35 16 Total: 0.00 -26.04 354.24 -4.48 -30.52 By element: Atomic # 1 Polarization: -18.74 SS G_CDS: -0.85 Total: -19.58 kcal Atomic # 6 Polarization: 0.61 SS G_CDS: 2.55 Total: 3.16 kcal Atomic # 7 Polarization: 2.55 SS G_CDS: -0.97 Total: 1.59 kcal Atomic # 8 Polarization: -23.20 SS G_CDS: -7.69 Total: -30.89 kcal Atomic # 9 Polarization: -0.21 SS G_CDS: 2.23 Total: 2.02 kcal Atomic # 14 Polarization: -0.44 SS G_CDS: 1.85 Total: 1.41 kcal Atomic # 16 Polarization: 13.40 SS G_CDS: -1.61 Total: 11.79 kcal Total: -26.04 -4.48 -30.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_17047602_15065288.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -202.959 kcal (2) G-P(sol) polarization free energy of solvation -26.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -228.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -233.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds